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I am trying to run this command
HMRcore = ScFBAExpSetting(HMRcore, length(BC04.CellType));
got an error like this:-
Error using EditBoundaries
Too many input arguments.
Error in ScFBAExpSetting (line 30)
model = EditBoundaries(model, 'SLC25A5_SLC25A4_SLC25A6', 0,10000, false, false);
I am not sure why I am getting this error.
and in the next step.
BC04 = single2IntPopModel(BC04, HMRcore, IdxExRxns, IdxCoopRxn, 's');
Error:-
Error using parseCobraVarargin
The value of 'osenseStr' is invalid. It must satisfy the function: @(x)strcmp(x,'max')|strcmp(x,'min').
We apologize for the inconvenience. We are having compatibility issues with the latest version of Cobra and other dependencies.
We have pushed a new version of the tool that should at least fix the error in fluxVariability (line 115).
Please let us know if you are still having trouble.
Thank you for your reply. it got fixed, I am using cobra version 2.0, and now it's running fine. also, I wanted to ask you I am working on scRNA seq data and if I am using the HUMAN GEM model as a templated model. do I need to make changes to that model, please let me know.
I am trying to run this command
HMRcore = ScFBAExpSetting(HMRcore, length(BC04.CellType));
got an error like this:-
Error using EditBoundaries
Too many input arguments.
Error in ScFBAExpSetting (line 30)
model = EditBoundaries(model, 'SLC25A5_SLC25A4_SLC25A6', 0,10000, false, false);
I am not sure why I am getting this error.
and in the next step.
BC04 = single2IntPopModel(BC04, HMRcore, IdxExRxns, IdxCoopRxn, 's');
Error:-
Error using parseCobraVarargin
The value of 'osenseStr' is invalid. It must satisfy the function: @(x)strcmp(x,'max')|strcmp(x,'min').
Error in fluxVariability (line 115)
[funParams, cobraParams, solverVarargin] = parseCobraVarargin(varargin, optArgin, defaultValues, validator, problemTypes, 'solverParams', true);
Error in integrateRAS (line 32)
[Fmin,FMax] = fluxVariability(modelPop, 100, '', RxnList); %controllare che 100 vada bene
Error in single2IntPopModel (line 87)
scStruct = integrateRAS(scStruct, 'modelDel');
getting this error I am not able to understand please explain.
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