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Adjust_bracken_percentages_for_unclassified_reads.py produces empty file if no reads are re-estimated #38

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taranewman opened this issue May 29, 2024 · 0 comments

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taranewman commented May 29, 2024

taxon-abundance/modules/taxon_abundance.nf

Line 106 in ea42041

adjust_bracken_percentages_for_unclassified_reads.py \

This step produces an empty ${sample_id}_${taxonomic_level}_bracken_abundances_unsorted_with_unclassified.csv file
if no reads are re-estimated.

Need to update this to still produce an output file / rework so output file will still be produced so doesn't show a failure

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