From 52b6c1e833b7240c0b432d600363cac0a116e972 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Wed, 21 Feb 2024 16:39:21 -0800 Subject: [PATCH 1/7] Add testing pipeline --- .github/data/reads_to_simulate.csv | 5 + .github/data/variants/DRR261178.vcf | 1488 +++++++++++ .github/data/variants/DRR261179.vcf | 2196 ++++++++++++++++ .github/data/variants/DRR261180.vcf | 1567 ++++++++++++ .github/data/variants/DRR261181.vcf | 2215 +++++++++++++++++ .github/environments/art.yml | 7 + .github/environments/check-outputs.yml | 9 + .github/scripts/apply_variants.py | 73 + .github/scripts/apply_variants.sh | 6 + .github/scripts/check_outputs.py | 118 + .github/scripts/check_outputs.sh | 10 + .github/scripts/create_art_environment.sh | 3 + .../create_output_checking_environment.sh | 3 + .github/scripts/download_assemblies.sh | 5 + .github/scripts/install_conda.sh | 22 + .github/scripts/install_nextflow.sh | 11 + .github/scripts/prepare_artifacts.sh | 13 + .github/scripts/run_pipeline.sh | 14 + .github/scripts/simulate_reads.sh | 35 + .github/workflows/tests.yml | 50 + 20 files changed, 7850 insertions(+) create mode 100644 .github/data/reads_to_simulate.csv create mode 100644 .github/data/variants/DRR261178.vcf create mode 100644 .github/data/variants/DRR261179.vcf create mode 100644 .github/data/variants/DRR261180.vcf create mode 100644 .github/data/variants/DRR261181.vcf create mode 100644 .github/environments/art.yml create mode 100644 .github/environments/check-outputs.yml create mode 100755 .github/scripts/apply_variants.py create mode 100755 .github/scripts/apply_variants.sh create mode 100755 .github/scripts/check_outputs.py create mode 100755 .github/scripts/check_outputs.sh create mode 100755 .github/scripts/create_art_environment.sh create mode 100755 .github/scripts/create_output_checking_environment.sh create mode 100755 .github/scripts/download_assemblies.sh create mode 100755 .github/scripts/install_conda.sh create mode 100755 .github/scripts/install_nextflow.sh create mode 100755 .github/scripts/prepare_artifacts.sh create mode 100755 .github/scripts/run_pipeline.sh create mode 100755 .github/scripts/simulate_reads.sh create mode 100644 .github/workflows/tests.yml diff --git a/.github/data/reads_to_simulate.csv b/.github/data/reads_to_simulate.csv new file mode 100644 index 0000000..1cdcbba --- /dev/null +++ b/.github/data/reads_to_simulate.csv @@ -0,0 +1,5 @@ +H37Rv,.github/data/assemblies/NC_000962.3.fa +DRR261178,.github/data/assemblies/DRR261178.fa +DRR261179,.github/data/assemblies/DRR261179.fa +DRR261180,.github/data/assemblies/DRR261180.fa +DRR261181,.github/data/assemblies/DRR261181.fa diff --git a/.github/data/variants/DRR261178.vcf b/.github/data/variants/DRR261178.vcf new file mode 100644 index 0000000..264073c --- /dev/null +++ b/.github/data/variants/DRR261178.vcf @@ -0,0 +1,1488 @@ +##fileformat=VCFv4.2 +##FILTER= +##fileDate=20240221 +##source=freeBayes v1.3.6 +##reference=reference/ref.fa +##contig= +##phasing=none +##commandline="freebayes -p 2 -P 0 -C 2 -F 0.05 --min-coverage 10 --min-repeat-entropy 1.0 -q 13 -m 60 --strict-vcf -f reference/ref.fa DRR261178.bam --region NC_000962.3:0-299008" +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##bcftools_viewVersion=1.15.1+htslib-1.16 +##bcftools_viewCommand=view --include 'FMT/GT="1/1" && QUAL>=100 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0' DRR261178.raw.vcf; Date=Wed Feb 21 16:22:46 2024 +##bcftools_annotateVersion=1.15.1+htslib-1.16 +##bcftools_annotateCommand=annotate --remove ^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL; Date=Wed Feb 21 16:22:46 2024 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DRR261178 +NC_000962.3 1849 . C A 2181.34 . AB=0;AO=86;DP=90;QA=2580;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:4:120:86:2580:-221.368,-15.9943,0 +NC_000962.3 1977 . A G 2988.01 . AB=0;AO=112;DP=113;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 2309 . G A 2481.26 . AB=0;AO=95;DP=97;QA=2850;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:2:60:95:2850:-251.064,-23.5007,0 +NC_000962.3 4013 . T C 1884.91 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 7362 . G C 2631.8 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 7585 . G C 2175.17 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 9304 . G A 2512.51 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 11820 . C G 2308.81 . AB=0;AO=92;DP=98;QA=2760;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:6:180:92:2760:-232.166,-13.0033,0 +NC_000962.3 11879 . A G 2369.3 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 14785 . T C 2495.78 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 14861 . G T 2172.35 . AB=0;AO=86;DP=91;QA=2580;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:5:150:86:2580:-218.668,-13.5957,0 +NC_000962.3 15117 . C G 2397.77 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 16119 . C A 2399.62 . AB=0;AO=91;DP=93;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:91:2730:-242.965,-24.9952,0 +NC_000962.3 21795 . G A 1675.11 . AB=0;AO=65;DP=68;QA=1950;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 24698 . GCCGCGTTGCTCGGGGTAA G 1450.66 . AB=0;AO=56;DP=61;QA=1680;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 25610 . G C 1958.62 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 26959 . C G 2431.37 . AB=0;AO=92;DP=93;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:92:2760:-245.664,-24.9962,0 +NC_000962.3 28366 . AT A 1868.79 . AB=0;AO=72;DP=76;QA=2160;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:72:2160:-188.973,-16.877,0 +NC_000962.3 34044 . T C 2504.6 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 35608 . C T 2653.53 . AB=0;AO=105;DP=113;QA=3150;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:6:180:105:3150:-267.261,-17.2167,0 +NC_000962.3 36008 . G C 2644.54 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 37031 . C G 2430.81 . AB=0;AO=92;DP=93;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:92:2760:-245.664,-24.9962,0 +NC_000962.3 37305 . C G 2183.82 . AB=0;AO=84;DP=87;QA=2520;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:60:84:2520:-221.368,-20.4894,0 +NC_000962.3 39158 . C G 961.026 . AB=0;AO=42;DP=46;QA=1260;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:4:120:42:1260:-102.585,-2.74898,0 +NC_000962.3 42281 . C A 1883.06 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 42967 . G C 2513.77 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 44768 . A G 2142.2 . AB=0;AO=89;DP=98;QA=2670;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:9:270:89:2670:-215.969,-4.9045,0 +NC_000962.3 49360 . C T 1617.36 . AB=0;AO=64;DP=68;QA=1920;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:3:90:64:1920:-164.676,-12.0702,0 +NC_000962.3 49690 . GCC G 2717.46 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.301,-30.7051,0 +NC_000962.3 50557 . T C 2395.47 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 51949 . A G 2369.49 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 54394 . A G 2447.65 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 55549 . GCCGC TCCGCCGCCGCCGT 1231.13 . AB=0;AO=47;DP=54;QA=1410;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 62049 . A G 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 63146 . G T 2685.57 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 65150 . C T 2703.12 . AB=0;AO=106;DP=112;QA=3180;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:5:150:106:3180:-272.661,-19.9163,0 +NC_000962.3 67070 . CT GCCGGAGACCTGGCATCGCCACAATCGGTGGG 1163.7 . AB=0;AO=49;DP=55;QA=1470;QR=150;RO=5;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:5:150:49:1470:-118.783,-2.75757,0 +NC_000962.3 68337 . T TC 1954.15 . AB=0;AO=80;DP=90;QA=2400;QR=210;RO=7;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:90:7:210:80:2400:-197.072,-7.29234,0 +NC_000962.3 69989 . G A 2393.75 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 70267 . G T 2093.56 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 70816 . A G 2746.86 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 71336 . G C 960.602 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 71584 . C CCGAGCGCTGTTCTGGCGCTAATCTGACGCTAGAATAG 1183.8 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 75233 . C A 1331.34 . AB=0;AO=53;DP=58;QA=1590;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:3:90:53:1590:-134.98,-8.75885,0 +NC_000962.3 75940 . G C 2009.86 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 87468 . C T 2028.82 . AB=0;AO=79;DP=82;QA=2370;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:3:90:79:2370:-205.17,-16.2857,0 +NC_000962.3 92199 . T G 1431.33 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 93484 . G T 2145.22 . AB=0;AO=86;DP=93;QA=2580;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:6:180:86:2580:-215.969,-11.4971,0 +NC_000962.3 94388 . G A 1644.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 96894 . C T 1585.8 . AB=0;AO=66;DP=73;QA=1980;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:7:210:66:1980:-159.277,-2.77797,0 +NC_000962.3 97350 . A C 2301.3 . AB=0;AO=89;DP=92;QA=2670;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:3:90:89:2670:-232.166,-19.296,0 +NC_000962.3 99162 . TCGGTGTGCG T 2035.39 . AB=0;AO=80;DP=85;QA=2400;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:4:120:80:2400:-205.17,-14.4881,0 +NC_000962.3 103744 . AGGAATCGTTCGG CGTAGCAGCTTCTCGT 1008.59 . AB=0;AO=43;DP=52;QA=1290;QR=150;RO=5;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:5:150:43:1290:-102.585,-0.951391,0 +NC_000962.3 105045 . G C 1126.45 . AB=0;AO=46;DP=47;QA=1380;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:1:30:46:1380:-121.482,-11.1488,0 +NC_000962.3 105139 . C A 1935.74 . AB=0;AO=77;DP=81;QA=2310;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:4:120:77:2310:-197.072,-13.285,0 +NC_000962.3 105736 . T C 2354.49 . AB=0;AO=91;DP=94;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:91:2730:-237.566,-19.898,0 +NC_000962.3 116000 . T G 2381.66 . AB=0;AO=91;DP=93;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:2:60:91:2730:-240.265,-22.2966,0 +NC_000962.3 119555 . C T 2170.47 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 122109 . A G 2037.56 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 123454 . C T 2298.61 . AB=0;AO=90;DP=95;QA=2700;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:4:120:90:2700:-232.166,-17.4984,0 +NC_000962.3 123520 . T C 2522.68 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 125830 . G GA 1490.76 . AB=0;AO=57;DP=64;QA=1710;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 128469 . C A 1839.17 . AB=0;AO=72;DP=76;QA=2160;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:3:90:72:2160:-186.273,-14.4784,0 +NC_000962.3 131174 . T TG 2552.63 . AB=0;AO=96;DP=102;QA=2880;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 132417 . C G 245.628 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 133839 . C T 2421.19 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 135329 . C T 2501.63 . AB=0;AO=96;DP=100;QA=2880;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:2:60:96:2880:-253.763,-24.1017,0 +NC_000962.3 139297 . G T 2674.91 . AB=0;AO=109;DP=120;QA=3270;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:9:270:109:3270:-269.961,-11.2251,0 +NC_000962.3 141623 . G A 2598.72 . AB=0;AO=100;DP=104;QA=3000;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:3:90:100:3000:-261.862,-22.9073,0 +NC_000962.3 142618 . C T 1869.25 . AB=0;AO=72;DP=75;QA=2160;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:2:60:72:2160:-188.973,-16.877,0 +NC_000962.3 143207 . T C 2048.55 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 146087 . T C 2082.31 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 146236 . C G 1842.83 . AB=0;AO=73;DP=77;QA=2190;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:4:120:73:2190:-186.273,-12.0809,0 +NC_000962.3 147262 . G T 2437.26 . AB=0;AO=96;DP=101;QA=2880;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:5:150:96:2880:-245.664,-16.606,0 +NC_000962.3 154283 . T C 2553.84 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 162151 . GT G 1922.7 . AB=0;AO=74;DP=82;QA=2220;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:74:2220:-194.365,-17.4816,0 +NC_000962.3 163705 . CC TT 1751.85 . AB=0;AO=69;DP=73;QA=2070;QR=90;RO=3;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:73:3:90:69:2070:-178.174,-13.5753,0 +NC_000962.3 173064 . T C 2219.71 . AB=0;AO=85;DP=89;QA=2550;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:85:2550:-224.068,-20.7904,0 +NC_000962.3 176141 . G T 1171.01 . AB=0;AO=49;DP=54;QA=1470;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:5:150:49:1470:-118.783,-2.45761,0 +NC_000962.3 177857 . G A 2236.44 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 183091 . C G 2193.52 . AB=0;AO=87;DP=92;QA=2610;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:5:150:87:2610:-221.368,-13.8968,0 +NC_000962.3 188800 . T C 2368.52 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 190816 . A C 1761.98 . AB=0;AO=68;DP=70;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:68:2040:-178.174,-15.3729,0 +NC_000962.3 191750 . C T 1880.14 . AB=0;AO=77;DP=84;QA=2310;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:6:180:77:2310:-191.672,-8.78783,0 +NC_000962.3 194305 . C CGG 2181.95 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 194681 . G C 2452.9 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 195682 . C G 2085.56 . AB=0;AO=80;DP=82;QA=2400;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:80:2400:-210.57,-18.9853,0 +NC_000962.3 196642 . C T 3631.42 . AB=0;AO=136;DP=139;QA=4080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:139:0:0:136:4080:-367.147,-40.9401,0 +NC_000962.3 197705 . G A 2011.94 . AB=0;AO=78;DP=81;QA=2340;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:3:90:78:2340:-202.471,-15.9846,0 +NC_000962.3 199470 . T G 2798.31 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 203038 . T C 2383.9 . AB=0;AO=97;DP=105;QA=2910;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:8:240:97:2910:-240.265,-9.71132,0 +NC_000962.3 206339 . T C 1475.82 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 206481 . CGGG GGGT 691.501 . AB=0;AO=27;DP=28;QA=810;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:27:810:-72.8895,-8.12781,0 +NC_000962.3 209387 . T G 2179.89 . AB=0;AO=87;DP=92;QA=2610;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:5:150:87:2610:-221.368,-13.8968,0 +NC_000962.3 213147 . C A 2113.83 . AB=0;AO=83;DP=87;QA=2490;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:4:120:83:2490:-213.269,-15.0912,0 +NC_000962.3 213281 . C T 2331.43 . AB=0;AO=94;DP=102;QA=2820;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:7:210:94:2820:-234.866,-11.5068,0 +NC_000962.3 215223 . C T 2103.52 . AB=0;AO=80;DP=82;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:80:2400:-213.269,-21.6838,0 +NC_000962.3 215977 . C T 2028.38 . AB=0;AO=79;DP=82;QA=2370;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:3:90:79:2370:-205.17,-16.2857,0 +NC_000962.3 217201 . T C 2691.12 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 222925 . G A 1515.3 . AB=0;AO=60;DP=63;QA=1800;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:3:90:60:1800:-153.878,-10.5661,0 +NC_000962.3 223942 . T C 2180 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 225323 . T C 2011.94 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 227098 . T C 2694.46 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 230576 . G GT 2349.11 . AB=0;AO=89;DP=96;QA=2670;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 231114 . C G 2161.19 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 234477 . T G 1552.1 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 234496 . C CGT 1446.74 . AB=0;AO=56;DP=61;QA=1680;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 249350 . G A 1726.8 . AB=0;AO=67;DP=70;QA=2010;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:67:2010:-175.475,-15.3719,0 +NC_000962.3 249522 . T C 1753.03 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 251575 . G A 1884.77 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 261869 . T C 1208.49 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 262268 . A T 1513.3 . AB=0;AO=61;DP=65;QA=1830;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:4:120:61:1830:-153.878,-8.46855,0 +NC_000962.3 264129 . G A 2095.5 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 265554 . A C 2933.87 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 267751 . G C 2465.53 . AB=0;AO=98;DP=104;QA=2940;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:6:180:98:2940:-248.364,-14.8095,0 +NC_000962.3 270430 . G C 1957.4 . AB=0;AO=78;DP=83;QA=2340;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:5:150:78:2340:-197.072,-11.1875,0 +NC_000962.3 274968 . C T 1651.16 . AB=0;AO=64;DP=66;QA=1920;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:2:60:64:1920:-167.376,-14.1688,0 +NC_000962.3 278021 . T C 1635.43 . AB=0;AO=69;DP=77;QA=2070;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:8:240:69:2070:-164.676,-1.28248,0 +NC_000962.3 278681 . C G 1748.99 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 282892 . C T 1741.17 . AB=0;AO=71;DP=78;QA=2130;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:6:180:71:2130:-175.475,-6.98165,0 +NC_000962.3 283610 . GCGCT ACGCC 1473.64 . AB=0;AO=56;DP=63;QA=1680;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 285772 . A C 1721.12 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 285871 . A G 1509.63 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 293628 . A AC 1715.66 . AB=0;AO=65;DP=72;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:65:1950:-175.467,-19.567,0 +NC_000962.3 295746 . C T 2340.88 . AB=0;AO=91;DP=96;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:3:90:91:2730:-237.566,-20.198,0 +NC_000962.3 304923 . A G 1536.15 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 305188 . G T 1501.55 . AB=0;AO=65;DP=73;QA=1950;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:8:240:65:1950:-153.878,-0.0783555,0 +NC_000962.3 310973 . G A 2287.57 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 311613 . G T 2965.41 . AB=0;AO=112;DP=113;QA=3360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:112:3360:-299.657,-31.0168,0 +NC_000962.3 321492 . G A 1249.13 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 325505 . T C 2096.1 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 330265 . G T 1500.63 . AB=0;AO=62;DP=68;QA=1860;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:6:180:62:1860:-151.178,-3.97242,0 +NC_000962.3 333892 . G C 255.207 . AB=0;AO=11;DP=12;QA=330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:1:30:11:330:-26.9961,-0.612794,0 +NC_000962.3 338618 . C G 582.417 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 338844 . AC GT 3458.52 . AB=0;AO=131;DP=135;QA=3930;QR=60;RO=2;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:135:2:60:131:3930:-348.25,-34.6378,0 +NC_000962.3 340132 . G A 2646.77 . AB=0;AO=101;DP=106;QA=3030;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:2:60:101:3030:-267.261,-25.6069,0 +NC_000962.3 340372 . T C 1443.79 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 340572 . G GAGCGCC 999.069 . AB=0;AO=39;DP=45;QA=1170;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:39:1170:-102.585,-9.34159,0 +NC_000962.3 342146 . A C 3441.98 . AB=0;AO=129;DP=129;QA=3870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:129:0:0:129:3870:-348.55,-38.8329,0 +NC_000962.3 346275 . C G 1426.75 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 353309 . G A 2425.7 . AB=0;AO=96;DP=101;QA=2880;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:5:150:96:2880:-245.664,-16.606,0 +NC_000962.3 353365 . G A 1961.6 . AB=0;AO=78;DP=84;QA=2340;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:4:120:78:2340:-199.771,-13.886,0 +NC_000962.3 356528 . A G 1672.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 363375 . C A 2108.26 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 363464 . G A 2184.47 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 365689 . T C 2159.3 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 365782 . C T 1942.52 . AB=0;AO=76;DP=80;QA=2280;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:3:90:76:2280:-197.072,-15.6825,0 +NC_000962.3 370234 . A G 2120.1 . AB=0;AO=85;DP=91;QA=2550;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:6:180:85:2550:-213.269,-10.8961,0 +NC_000962.3 372913 . A C 1926.4 . AB=0;AO=75;DP=78;QA=2250;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:3:90:75:2250:-194.372,-15.0816,0 +NC_000962.3 373282 . TA T 1444.94 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 376774 . T C 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 379528 . G T 1765.4 . AB=0;AO=69;DP=73;QA=2070;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:3:90:69:2070:-178.174,-13.5753,0 +NC_000962.3 383716 . C T 1401.43 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 384380 . A C 1932.31 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 386432 . C G 2450.65 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 390828 . T C 2582.19 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 391853 . A G 2232.47 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 392261 . T C 2324.54 . AB=0;AO=89;DP=92;QA=2670;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:89:2670:-234.866,-21.9945,0 +NC_000962.3 392770 . G A 2360.04 . AB=0;AO=97;DP=107;QA=2910;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:9:270:97:2910:-237.566,-7.61269,0 +NC_000962.3 396199 . T C 2358.22 . AB=0;AO=92;DP=96;QA=2760;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:4:120:92:2760:-237.566,-17.8005,0 +NC_000962.3 403980 . G A 2144.1 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 404326 . T C 2587.71 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 414486 . C T 2403.98 . AB=0;AO=91;DP=93;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:91:2730:-242.965,-24.9952,0 +NC_000962.3 420008 . A G 2687.8 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 424320 . T TC 2552.63 . AB=0;AO=96;DP=99;QA=2880;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 424981 . G A 1290.05 . AB=0;AO=50;DP=52;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:50:1500:-132.281,-12.6529,0 +NC_000962.3 427310 . TTGCCGAGGTTTGCAC T 511.634 . AB=0;AO=22;DP=25;QA=660;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:25:2:60:22:660:-53.9748,-1.86558,0 +NC_000962.3 428698 . C T 1960.05 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 441823 . C T 2482.15 . AB=0;AO=95;DP=98;QA=2850;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:2:60:95:2850:-251.064,-23.8007,0 +NC_000962.3 445780 . C T 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 448919 . A T 2270.61 . AB=0;AO=87;DP=90;QA=2610;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:2:60:87:2610:-229.467,-21.3925,0 +NC_000962.3 449943 . C T 1987.55 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 454295 . T C 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 454333 . T G 1486.24 . AB=0;AO=57;DP=59;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 456594 . T C 1674.61 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 457452 . T G 1536.77 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 459399 . A C 1804.47 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 465300 . C T 1938.28 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 467497 . C CG 1289.43 . AB=0;AO=49;DP=52;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 467508 . C CG 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 467516 . G C 1337.15 . AB=0;AO=52;DP=54;QA=1560;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:52:1560:-134.98,-10.5564,0 +NC_000962.3 467526 . C G 1429.74 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 467546 . G C 1427.21 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 467557 . A C 1450.58 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 467564 . A C 1479.2 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 467585 . G C 1404.95 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 467590 . T C 1423.66 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 467621 . T G 1562.04 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 467638 . G T 1621.91 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 475178 . T C 2560.17 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 477234 . T G 1658.12 . AB=0;AO=65;DP=68;QA=1950;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:3:90:65:1950:-167.376,-12.0713,0 +NC_000962.3 483935 . T G 3712.45 . AB=0;AO=139;DP=140;QA=4170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:140:0:0:139:4170:-375.246,-41.8432,0 +NC_000962.3 484596 . C T 3946.2 . AB=0;AO=151;DP=156;QA=4530;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:156:4:120:151:4530:-396.843,-35.8612,0 +NC_000962.3 485810 . CA C 4172.01 . AB=0;AO=159;DP=166;QA=4770;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:166:3:90:159:4770:-421.139,-40.668,0 +NC_000962.3 489935 . G C 3208.9 . AB=0;AO=121;DP=121;QA=3630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:0:0:121:3630:-326.953,-36.4246,0 +NC_000962.3 491742 . T C 2493.82 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 492150 . G C 1800.97 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 498531 . A G 2638.81 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 498557 . C A 2579.01 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 502589 . C G 2000.75 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 503354 . G C 2639.33 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 505974 . G A 2819.36 . AB=0;AO=106;DP=108;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 506567 . C T 2385.66 . AB=0;AO=96;DP=103;QA=2880;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:7:210:96:2880:-240.265,-11.8089,0 +NC_000962.3 507028 . GC G 2275 . AB=0;AO=89;DP=98;QA=2670;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:98:4:120:89:2670:-229.467,-17.1974,0 +NC_000962.3 513257 . T C 2557.43 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 517358 . T C 1509.33 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 518987 . C T 2366.08 . AB=0;AO=92;DP=95;QA=2760;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:3:90:92:2760:-240.265,-20.1991,0 +NC_000962.3 521169 . C G 2462.17 . AB=0;AO=99;DP=106;QA=2970;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:7:210:99:2970:-248.364,-12.712,0 +NC_000962.3 524891 . C A 2655.29 . AB=0;AO=102;DP=105;QA=3060;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:3:90:102:3060:-267.261,-23.2094,0 +NC_000962.3 528473 . C T 2162.49 . AB=0;AO=84;DP=89;QA=2520;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:3:90:84:2520:-218.668,-18.0908,0 +NC_000962.3 533547 . C G 926.107 . AB=0;AO=36;DP=39;QA=1080;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:1:30:36:1080:-94.4863,-8.4385,0 +NC_000962.3 541201 . A G 2802.43 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 542014 . C G 2451.58 . AB=0;AO=94;DP=96;QA=2820;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:2:60:94:2820:-248.364,-23.1997,0 +NC_000962.3 546357 . A G 2060.82 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 546451 . A T 2163.29 . AB=0;AO=86;DP=92;QA=2580;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:5:150:86:2580:-218.668,-13.8957,0 +NC_000962.3 549363 . C GGG 812.755 . AB=0;AO=33;DP=42;QA=990;QR=60;RO=2;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:42:2:60:33:990:-83.6879,-5.13683,0 +NC_000962.3 551525 . A C 2309.58 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 555991 . A G 1765.65 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 556177 . G A 2629.28 . AB=0;AO=102;DP=106;QA=3060;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:4:120:102:3060:-264.562,-20.8108,0 +NC_000962.3 557356 . CA C 2302.3 . AB=0;AO=88;DP=94;QA=2640;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:88:2640:-232.166,-21.6935,0 +NC_000962.3 561776 . CC TT 2238.63 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 565655 . A G 2253.27 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 572591 . C T 1825.33 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 573262 . A G 1884.19 . AB=0;AO=71;DP=73;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 580772 . TGGGGGCACCACCCGCTTGCGGGGGA AG 1265.73 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.822,-14.4494,0 +NC_000962.3 583171 . A C 1672.58 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 584171 . T C 1995.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 590436 . T C 2177.48 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 597816 . A G 3419.44 . AB=0;AO=128;DP=129;QA=3840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:129:0:0:128:3840:-345.55,-38.5318,0 +NC_000962.3 598034 . G A 3052.31 . AB=0;AO=117;DP=122;QA=3510;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:3:90:117:3510:-307.756,-28.0248,0 +NC_000962.3 598475 . G A 2307.41 . AB=0;AO=87;DP=91;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 599868 . A G 2852.14 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 604982 . G A 2093.74 . AB=0;AO=79;DP=81;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 610120 . T G 2493.19 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 611048 . T G 2410.76 . AB=0;AO=94;DP=98;QA=2820;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:4:120:94:2820:-242.965,-18.4025,0 +NC_000962.3 620625 . A G 2031.83 . AB=0;AO=78;DP=80;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:78:2340:-205.17,-18.3832,0 +NC_000962.3 627485 . G A 1112.59 . AB=0;AO=45;DP=46;QA=1350;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:1:30:45:1350:-118.783,-10.8478,0 +NC_000962.3 628864 . T C 2434.08 . AB=0;AO=93;DP=95;QA=2790;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:93:2790:-245.664,-22.8987,0 +NC_000962.3 630722 . G C 1524.02 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 637319 . G A 2854.79 . AB=0;AO=107;DP=108;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 640954 . A G 1545.68 . AB=0;AO=64;DP=72;QA=1920;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:6:180:64:1920:-156.577,-4.87444,0 +NC_000962.3 648002 . T G 2722.06 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 648856 . T C 2828.88 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 652027 . G T 2247.91 . AB=0;AO=88;DP=92;QA=2640;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:4:120:88:2640:-226.767,-16.5964,0 +NC_000962.3 655986 . T G 2424.94 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 657081 . C T 2141.07 . AB=0;AO=84;DP=88;QA=2520;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:4:120:84:2520:-215.969,-15.3922,0 +NC_000962.3 657142 . C T 1874.42 . AB=0;AO=74;DP=78;QA=2220;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:4:120:74:2220:-188.973,-12.3819,0 +NC_000962.3 659341 . T C 2585.25 . AB=0;AO=97;DP=99;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 662911 . T C 1901.71 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 665293 . A G 1898.36 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 669033 . T A 1987.86 . AB=0;AO=79;DP=84;QA=2370;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:5:150:79:2370:-199.771,-11.4885,0 +NC_000962.3 669398 . T C 2667.05 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 670545 . G A 2589.08 . AB=0;AO=98;DP=103;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 672491 . C G 891.715 . AB=0;AO=35;DP=36;QA=1050;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:1:30:35:1050:-91.7867,-7.83751,0 +NC_000962.3 672512 . ACCGGTGCCG A 564.217 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 673238 . A G 315.02 . AB=0;AO=13;DP=16;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:13:390:-35.0949,-3.91339,0 +NC_000962.3 676345 . C T 2205.67 . AB=0;AO=86;DP=91;QA=2580;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:4:120:86:2580:-221.368,-16.2943,0 +NC_000962.3 683829 . C T 2046.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 685461 . C G 2849.86 . AB=0;AO=108;DP=109;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:1:30:108:3240:-288.858,-29.8127,0 +NC_000962.3 685608 . T C 2818.39 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 686972 . T C 1890.37 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 688792 . T TG 3171.05 . AB=0;AO=119;DP=119;QA=3570;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:119:0:0:119:3570:-321.494,-35.8226,0 +NC_000962.3 690450 . A C 2312.38 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 690465 . T G 2222.29 . AB=0;AO=85;DP=87;QA=2550;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:60:85:2550:-224.068,-20.4904,0 +NC_000962.3 694531 . A G 1845.82 . AB=0;AO=74;DP=79;QA=2220;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:5:150:74:2220:-186.273,-9.98336,0 +NC_000962.3 696917 . G T 2325.97 . AB=0;AO=90;DP=94;QA=2700;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:90:2700:-234.866,-19.897,0 +NC_000962.3 698968 . G A 1963.55 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 702691 . G A 1334.11 . AB=0;AO=54;DP=58;QA=1620;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:4:120:54:1620:-134.98,-6.36134,0 +NC_000962.3 707334 . T C 1360.63 . AB=0;AO=54;DP=57;QA=1620;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:54:1620:-140.38,-11.4585,0 +NC_000962.3 708031 . G GC 1605.79 . AB=0;AO=66;DP=76;QA=1980;QR=180;RO=6;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:6:180:66:1980:-161.977,-5.4765,0 +NC_000962.3 712693 . A G 2199.98 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 713310 . T C 1617.07 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 721373 . T G 1001.71 . AB=0;AO=39;DP=40;QA=1170;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:1:30:39:1170:-102.585,-9.04163,0 +NC_000962.3 725190 . G A 1517.18 . AB=0;AO=61;DP=65;QA=1830;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:4:120:61:1830:-153.878,-8.46855,0 +NC_000962.3 730077 . CGCCCACGCG C 2099.27 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.21,-23.7814,0 +NC_000962.3 738522 . T G 1951.62 . AB=0;AO=80;DP=87;QA=2400;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:7:210:80:2400:-197.072,-6.99239,0 +NC_000962.3 752134 . C T 1753.81 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 754186 . A G 1529.09 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 757139 . C A 2222.71 . AB=0;AO=88;DP=94;QA=2640;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:5:150:88:2640:-224.068,-14.4977,0 +NC_000962.3 757182 . A G 2531.84 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 763031 . T C 2506.5 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 767414 . G A 1508.12 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 773497 . C A 1405.2 . AB=0;AO=55;DP=57;QA=1650;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:55:1650:-143.079,-11.4595,0 +NC_000962.3 775639 . T C 1659.69 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 776100 . G A 2610.76 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 779615 . G C 1950.06 . AB=0;AO=80;DP=87;QA=2400;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:7:210:80:2400:-197.072,-6.99239,0 +NC_000962.3 779989 . T C 2004.58 . AB=0;AO=79;DP=85;QA=2370;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:4:120:79:2370:-202.471,-14.1871,0 +NC_000962.3 781395 . T C 1373.78 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 797736 . C T 1764.81 . AB=0;AO=70;DP=75;QA=2100;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:4:120:70:2100:-178.174,-11.4778,0 +NC_000962.3 798355 . G C 2562.33 . AB=0;AO=99;DP=102;QA=2970;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:3:90:99:2970:-259.163,-22.3063,0 +NC_000962.3 799666 . A G 2406.06 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 809840 . G GC 1621.07 . AB=0;AO=63;DP=67;QA=1890;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:2:60:63:1890:-164.676,-14.1677,0 +NC_000962.3 811753 . C T 2282.9 . AB=0;AO=93;DP=102;QA=2790;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:8:240:93:2790:-229.467,-8.80715,0 +NC_000962.3 812031 . T G 2727.94 . AB=0;AO=104;DP=107;QA=3120;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:2:60:104:3120:-275.36,-26.51,0 +NC_000962.3 820483 . G T 1884.18 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 820752 . C T 1727.64 . AB=0;AO=66;DP=69;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 830868 . G GGC 1315.32 . AB=0;AO=50;DP=57;QA=1500;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 832020 . C A 607.709 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 835611 . C T 1405.6 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 837033 . A G 352.887 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 838990 . C G 143.722 . AB=0;AO=9;DP=10;QA=270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:1:30:9:270:-21.5969,-0.0107336,0 +NC_000962.3 841764 . G C 2522.48 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 842030 . C T 2858.39 . AB=0;AO=108;DP=109;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:1:30:108:3240:-288.858,-29.8127,0 +NC_000962.3 844319 . G A 2197.9 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 847995 . T C 2444.83 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 852910 . C T 2493.19 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 854252 . GCC G 1606.55 . AB=0;AO=61;DP=66;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:61:1830:-164.665,-18.3628,0 +NC_000962.3 857696 . A G 2472.88 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 861216 . T G 2171.78 . AB=0;AO=84;DP=89;QA=2520;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:3:90:84:2520:-218.668,-18.0908,0 +NC_000962.3 866051 . G A 1695.79 . AB=0;AO=66;DP=68;QA=1980;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:66:1980:-172.775,-14.7709,0 +NC_000962.3 868560 . T TA 1687.12 . AB=0;AO=70;DP=80;QA=2100;QR=210;RO=7;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:80:7:210:70:2100:-170.075,-4.28204,0 +NC_000962.3 874835 . C CCG 2122.79 . AB=0;AO=80;DP=86;QA=2400;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 876141 . G T 2209.93 . AB=0;AO=88;DP=93;QA=2640;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:5:150:88:2640:-224.068,-14.1978,0 +NC_000962.3 880562 . G T 2552.68 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 882257 . T C 1588.67 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 892416 . C T 2821.83 . AB=0;AO=114;DP=124;QA=3420;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:124:9:270:114:3420:-283.459,-12.7302,0 +NC_000962.3 893733 . T G 1726.93 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 900221 . T C 2713.3 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 903537 . G T 2073.17 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 903550 . T C 2121.07 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 903913 . T C 2232.14 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 906857 . A G 2040.18 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 909166 . C T 658.571 . AB=0;AO=30;DP=34;QA=900;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:2:60:30:900:-75.5891,-4.23374,0 +NC_000962.3 916687 . GAGC A 2082.75 . AB=0;AO=81;DP=87;QA=2430;QR=90;RO=3;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:87:3:90:81:2430:-210.57,-17.1877,0 +NC_000962.3 919351 . A C 2920.5 . AB=0;AO=114;DP=121;QA=3420;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:5:150:114:3420:-294.257,-22.3245,0 +NC_000962.3 921813 . C G 2044.3 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 925453 . C T 345.649 . AB=0;AO=15;DP=17;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 931123 . T C 2670.76 . AB=0;AO=101;DP=102;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:101:3030:-269.961,-27.7055,0 +NC_000962.3 932280 . T C 2131.72 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 934230 . C G 2289.37 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 934611 . G T 2236.17 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 940602 . C G 1971.19 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 941845 . C A 1656.8 . AB=0;AO=65;DP=69;QA=1950;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:3:90:65:1950:-167.376,-12.3712,0 +NC_000962.3 945214 . G A 2002.03 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 949535 . T C 1802.2 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 955524 . A G 2475.29 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 957117 . T C 3446.88 . AB=0;AO=129;DP=130;QA=3870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:130:0:0:129:3870:-348.25,-38.8329,0 +NC_000962.3 960367 . A G 1858.02 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 968426 . A AGCCGGGTTG 1568.3 . AB=0;AO=60;DP=65;QA=1800;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:60:1800:-159.266,-15.6662,0 +NC_000962.3 969762 . C G 274.435 . AB=0;AO=14;DP=15;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:14:420:-37.7945,-4.21442,0 +NC_000962.3 972980 . C T 1484.4 . AB=0;AO=59;DP=64;QA=1770;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:3:90:59:1770:-151.178,-10.565,0 +NC_000962.3 979704 . G C 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 986463 . G C 2760.39 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 987585 . A AG 1419.63 . AB=0;AO=55;DP=64;QA=1650;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:64:2:60:55:1650:-143.079,-11.7595,0 +NC_000962.3 990001 . G C 2204.48 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 993346 . A C 2915.74 . AB=0;AO=110;DP=111;QA=3300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:110:3300:-294.257,-30.4148,0 +NC_000962.3 996205 . T C 3247.06 . AB=0;AO=124;DP=128;QA=3720;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:128:3:90:124:3720:-326.653,-30.132,0 +NC_000962.3 1010204 . C CG 2466.73 . AB=0;AO=93;DP=98;QA=2790;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 1011511 . A C 2292.17 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1023756 . T C 1873.11 . AB=0;AO=77;DP=85;QA=2310;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:8:240:77:2310:-186.273,-3.69072,0 +NC_000962.3 1024346 . A G 2444.28 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1025106 . T C 3064.6 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 1025969 . T G 1874.36 . AB=0;AO=73;DP=75;QA=2190;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:2:60:73:2190:-191.672,-16.8781,0 +NC_000962.3 1028217 . G A 1816.01 . AB=0;AO=70;DP=72;QA=2100;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:70:2100:-183.573,-15.975,0 +NC_000962.3 1034208 . CGCT C 1605.05 . AB=0;AO=62;DP=66;QA=1860;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:2:60:62:1860:-161.977,-13.8667,0 +NC_000962.3 1034758 . C T 2191.42 . AB=0;AO=84;DP=87;QA=2520;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:60:84:2520:-221.368,-20.4894,0 +NC_000962.3 1037012 . T C 1968.64 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1037911 . C T 2037.71 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1047165 . T C 1365.76 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1054784 . C G 2237.8 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1068151 . T C 1845.07 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1068432 . A G 2339.6 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 1070702 . T C 1938.69 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1071966 . A G 1980.78 . AB=0;AO=78;DP=83;QA=2340;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:4:120:78:2340:-199.771,-13.886,0 +NC_000962.3 1074558 . G A 1259.72 . AB=0;AO=50;DP=54;QA=1500;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:3:90:50:1500:-126.882,-7.85576,0 +NC_000962.3 1075279 . T C 2636.85 . AB=0;AO=99;DP=104;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 1076309 . G T 2425.55 . AB=0;AO=92;DP=93;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:92:2760:-245.664,-24.9962,0 +NC_000962.3 1076689 . A C 2275.97 . AB=0;AO=89;DP=93;QA=2670;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:4:120:89:2670:-229.467,-16.8974,0 +NC_000962.3 1076880 . C T 1768.3 . AB=0;AO=75;DP=86;QA=2250;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:9:270:75:2250:-178.174,-0.990032,0 +NC_000962.3 1077312 . A G 2826.53 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 1079697 . G C 2351.46 . AB=0;AO=91;DP=95;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:3:90:91:2730:-237.566,-20.198,0 +NC_000962.3 1079927 . C A 2573.5 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 1080192 . G A 2188.38 . AB=0;AO=83;DP=85;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 1081681 . T C 2573.06 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 1087193 . G C 2234.56 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1090188 . A AG 1696.33 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1093406 . A G 1893.24 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 1095644 . C T 400.031 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 1095678 . A G 413.49 . AB=0;AO=17;DP=18;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:17:510:-45.8934,-5.11751,0 +NC_000962.3 1096508 . CCT GCC 544.948 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 1096567 . A G 1105.19 . AB=0;AO=49;DP=53;QA=1470;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:4:120:49:1470:-121.482,-4.85619,0 +NC_000962.3 1096633 . T G 2020.73 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1097220 . C T 2557.43 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1097375 . A G 2893.64 . AB=0;AO=110;DP=112;QA=3300;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:2:60:110:3300:-291.558,-28.0162,0 +NC_000962.3 1097442 . C T 2511.13 . AB=0;AO=99;DP=106;QA=2970;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:5:150:99:2970:-253.763,-17.8091,0 +NC_000962.3 1098523 . T A 2093.47 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1099058 . G A 2312.98 . AB=0;AO=90;DP=94;QA=2700;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:4:120:90:2700:-232.166,-17.1984,0 +NC_000962.3 1100234 . T C 3354.58 . AB=0;AO=126;DP=126;QA=3780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:126:0:0:126:3780:-340.451,-37.9298,0 +NC_000962.3 1102030 . GA G 3448.1 . AB=0;AO=132;DP=141;QA=3960;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:141:3:90:132:3960:-348.25,-32.5402,0 +NC_000962.3 1102117 . G A 3859.97 . AB=0;AO=146;DP=149;QA=4380;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:149:2:60:146:4380:-388.744,-39.1532,0 +NC_000962.3 1102468 . C A 3303.53 . AB=0;AO=126;DP=131;QA=3780;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:131:3:90:126:3780:-332.052,-30.734,0 +NC_000962.3 1102646 . G A 3738.18 . AB=0;AO=143;DP=150;QA=4290;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:150:4:120:143:4290:-375.246,-33.453,0 +NC_000962.3 1104690 . T G 3402.02 . AB=0;AO=128;DP=129;QA=3840;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:129:1:30:128:3840:-342.85,-35.8333,0 +NC_000962.3 1105935 . C G 4536.98 . AB=0;AO=171;DP=174;QA=5130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:174:2:60:171:5130:-456.234,-46.679,0 +NC_000962.3 1106422 . T C 3257.37 . AB=0;AO=122;DP=122;QA=3660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:0:0:122:3660:-329.652,-36.7257,0 +NC_000962.3 1107940 . A C 2480.32 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1108874 . G T 2451.54 . AB=0;AO=95;DP=100;QA=2850;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:3:90:95:2850:-248.364,-21.4021,0 +NC_000962.3 1109975 . A G 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1126889 . G C 1800.72 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1127493 . T C 2253.4 . AB=0;AO=87;DP=89;QA=2610;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:87:2610:-229.467,-21.0925,0 +NC_000962.3 1127648 . C A 2963.99 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 1144585 . A G 1504.22 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1145848 . A C 1438.47 . AB=0;AO=56;DP=58;QA=1680;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:2:60:56:1680:-145.779,-11.7606,0 +NC_000962.3 1148259 . A G 2530.93 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 1149316 . C T 1935.02 . AB=0;AO=77;DP=82;QA=2310;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:4:120:77:2310:-197.072,-13.585,0 +NC_000962.3 1149551 . C T 2367.27 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1150585 . G A 1885.39 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1151054 . C G 1985.03 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 1160770 . T A 324.063 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 1163134 . T C 2420.21 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1164336 . G A 2170.09 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1165521 . T TA 1402.23 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1168009 . GC G 1808.6 . AB=0;AO=70;DP=75;QA=2100;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:2:60:70:2100:-183.573,-16.2749,0 +NC_000962.3 1168715 . C CT 1777.75 . AB=0;AO=67;DP=70;QA=2010;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1168776 . T G 1713.03 . AB=0;AO=69;DP=74;QA=2070;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:5:150:69:2070:-172.775,-8.47821,0 +NC_000962.3 1172085 . C A 2708.9 . AB=0;AO=105;DP=109;QA=3150;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:4:120:105:3150:-272.661,-21.7139,0 +NC_000962.3 1173750 . G T 1629.13 . AB=0;AO=64;DP=67;QA=1920;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:3:90:64:1920:-164.676,-11.7702,0 +NC_000962.3 1175343 . C T 1255.04 . AB=0;AO=51;DP=55;QA=1530;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:4:120:51:1530:-126.882,-5.45825,0 +NC_000962.3 1178116 . T C 2656.5 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 1190093 . A C 1291.02 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1191741 . G A 520.988 . AB=0;AO=23;DP=24;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:23:690:-62.091,-6.92369,0 +NC_000962.3 1197157 . T G 2408.7 . AB=0;AO=92;DP=94;QA=2760;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:92:2760:-242.965,-22.5976,0 +NC_000962.3 1199558 . CT C 1677.29 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 1200418 . A G 2238.42 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1201581 . A C 2263.65 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1211369 . A C 2418.87 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1212642 . GGCCGGTGGC G 432.994 . AB=0;AO=18;DP=23;QA=540;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:23:1:30:18:540:-45.8841,-3.02297,0 +NC_000962.3 1213679 . T TCGGCGACGGCGGCGCCGGTGGCGGCGGCGGGGCCGGCGGCATCGG 270.162 . AB=0;AO=11;DP=13;QA=330;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:11:330:-29.6957,-3.31133,0 +NC_000962.3 1215104 . AT A 2830.04 . AB=0;AO=110;DP=114;QA=3300;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:114:4:120:110:3300:-286.159,-23.219,0 +NC_000962.3 1215742 . GC AA 1763.18 . AB=0;AO=70;DP=75;QA=2100;QR=120;RO=4;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:75:4:120:70:2100:-178.174,-11.4778,0 +NC_000962.3 1217157 . A C 243.989 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 1220680 . T C 2530.65 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1224367 . T C 914.607 . AB=0;AO=35;DP=36;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 1227830 . G T 1550.77 . AB=0;AO=63;DP=67;QA=1890;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:4:120:63:1890:-159.277,-9.07061,0 +NC_000962.3 1230778 . G A 2529.02 . AB=0;AO=95;DP=97;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1231429 . G A 1972.45 . AB=0;AO=76;DP=82;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:76:2280:-199.771,-18.0811,0 +NC_000962.3 1248382 . A G 2254.1 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1248936 . G C 2476.99 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1248978 . T C 2343.45 . AB=0;AO=89;DP=91;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 1250340 . A G 1779.73 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1251199 . C T 2232.07 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1252053 . AG A 2025.72 . AB=0;AO=79;DP=82;QA=2370;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:82:3:90:79:2370:-205.17,-16.2857,0 +NC_000962.3 1252164 . T C 2609.34 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1254562 . A G 2967.89 . AB=0;AO=112;DP=113;QA=3360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:112:3360:-299.657,-31.0168,0 +NC_000962.3 1273250 . G GA 1839.5 . AB=0;AO=70;DP=74;QA=2100;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:70:2100:-186.273,-18.6735,0 +NC_000962.3 1275957 . T C 2259.29 . AB=0;AO=86;DP=88;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 1281118 . T C 2075.02 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1281771 . T C 2197.19 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1285001 . A C 1740.56 . AB=0;AO=68;DP=71;QA=2040;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:3:90:68:2040:-175.475,-12.9743,0 +NC_000962.3 1288698 . G A 1999.47 . AB=0;AO=80;DP=85;QA=2400;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:5:150:80:2400:-202.471,-11.7895,0 +NC_000962.3 1292102 . A G 2233.5 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1299305 . G A 1678.02 . AB=0;AO=65;DP=68;QA=1950;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 1306259 . A G 2691.73 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 1307598 . C G 2721.73 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1310279 . C T 1843.44 . AB=0;AO=71;DP=74;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:71:2130:-186.273,-16.576,0 +NC_000962.3 1312065 . A C 1354.7 . AB=0;AO=54;DP=57;QA=1620;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:3:90:54:1620:-137.68,-8.75992,0 +NC_000962.3 1313338 . A GC 2098.99 . AB=0;AO=79;DP=82;QA=2370;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1315191 . A C 2689.32 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 1315884 . G A 999.666 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 1317655 . C T 2025.37 . AB=0;AO=81;DP=86;QA=2430;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:5:150:81:2430:-205.17,-12.0906,0 +NC_000962.3 1322741 . A G 2677.4 . AB=0;AO=103;DP=106;QA=3090;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:3:90:103:3090:-269.961,-23.5104,0 +NC_000962.3 1327890 . G A 2177.69 . AB=0;AO=82;DP=85;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1328687 . G C 2175.17 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1329234 . G A 1677.97 . AB=0;AO=66;DP=69;QA=1980;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:66:1980:-172.775,-15.0708,0 +NC_000962.3 1340208 . G A 2450.28 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1342581 . T C 748.355 . AB=0;AO=32;DP=34;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:32:960:-86.3875,-9.63296,0 +NC_000962.3 1349733 . G C 1553.6 . AB=0;AO=63;DP=68;QA=1890;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:5:150:63:1890:-156.577,-6.67203,0 +NC_000962.3 1351172 . A G 1935.45 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1357308 . T G 1675.3 . AB=0;AO=66;DP=69;QA=1980;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:3:90:66:1980:-170.075,-12.3723,0 +NC_000962.3 1360209 . T C 2173.06 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1361190 . G A 1569 . AB=0;AO=60;DP=63;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 1361285 . C T 1497.63 . AB=0;AO=59;DP=62;QA=1770;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:3:90:59:1770:-151.178,-10.2651,0 +NC_000962.3 1362006 . T C 2371.23 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1365837 . C CGG 1945.56 . AB=0;AO=74;DP=78;QA=2220;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1367484 . T G 1888.92 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 1368322 . C CG 1917.49 . AB=0;AO=75;DP=81;QA=2250;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:81:3:90:75:2250:-194.372,-15.3815,0 +NC_000962.3 1370852 . T G 2135.12 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 1374065 . T C 1819.57 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1374201 . A G 2058.34 . AB=0;AO=79;DP=81;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:2:60:79:2370:-207.87,-18.6843,0 +NC_000962.3 1375044 . C G 2256.17 . AB=0;AO=88;DP=91;QA=2640;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:3:90:88:2640:-229.467,-18.9949,0 +NC_000962.3 1375724 . A C 2479.77 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1382628 . T C 2147.13 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1390763 . C T 1831.07 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1393626 . A G 1211.66 . AB=0;AO=47;DP=48;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:1:30:47:1410:-124.182,-11.4499,0 +NC_000962.3 1396922 . T C 2399.31 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1403581 . CGGGCACCGAGTGACATCGAGTTCGGCTGCGTCCGGGCCGTATTGGCGTTCGTCACGGTTG C 985.092 . AB=0;AO=40;DP=45;QA=1200;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:3:90:40:1200:-99.8856,-4.84546,0 +NC_000962.3 1411210 . T G 1957.21 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1413129 . CG C 1728.94 . AB=0;AO=66;DP=70;QA=1980;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 1413148 . C T 2017.57 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1414021 . C T 2737.1 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 1427668 . C A 2211.21 . AB=0;AO=89;DP=96;QA=2670;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:7:210:89:2670:-221.368,-9.70166,0 +NC_000962.3 1440469 . C G 2555.45 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1445781 . A G 2552.8 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 1449686 . G A 1707.3 . AB=0;AO=66;DP=69;QA=1980;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:66:1980:-172.775,-15.0708,0 +NC_000962.3 1457144 . C T 1856.79 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1466952 . T C 2839.68 . AB=0;AO=108;DP=110;QA=3240;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:2:60:108:3240:-286.159,-27.4141,0 +NC_000962.3 1468208 . A C 1216.65 . AB=0;AO=48;DP=50;QA=1440;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:2:60:48:1440:-124.182,-9.35232,0 +NC_000962.3 1471659 . C T 4074.71 . AB=0;AO=153;DP=153;QA=4590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:153:0:0:153:4590:-413.34,-46.0576,0 +NC_000962.3 1477522 . C A 1979.45 . AB=0;AO=78;DP=82;QA=2340;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:4:120:78:2340:-199.771,-13.5861,0 +NC_000962.3 1479085 . T C 2711.23 . AB=0;AO=103;DP=104;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:103:3090:-275.36,-28.3076,0 +NC_000962.3 1481337 . G A 3736.14 . AB=0;AO=144;DP=150;QA=4320;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:150:5:150:144:4320:-375.246,-31.3554,0 +NC_000962.3 1482627 . T C 2309.2 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1484708 . A C 1667.95 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1490905 . A G 2597.29 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1498951 . G T 2495.16 . AB=0;AO=100;DP=107;QA=3000;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:7:210:100:3000:-251.064,-13.013,0 +NC_000962.3 1499274 . C G 2076.12 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1501700 . G A 1368.86 . AB=0;AO=55;DP=59;QA=1650;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:4:120:55:1650:-137.68,-6.66237,0 +NC_000962.3 1513547 . C T 1819.52 . AB=0;AO=72;DP=76;QA=2160;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:4:120:72:2160:-183.573,-11.7799,0 +NC_000962.3 1526819 . C A 2506.5 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1533241 . G C 1428.48 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1533583 . G A 2686.15 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 1536251 . G T 1478.59 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1540141 . T C 1387.5 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1541798 . C T 1117.15 . AB=0;AO=44;DP=45;QA=1320;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:44:1320:-116.083,-10.5468,0 +NC_000962.3 1544255 . C T 2101.55 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1546703 . C T 2415.12 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1547125 . T C 2854.08 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 1547909 . G A 2244.49 . AB=0;AO=91;DP=98;QA=2730;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:7:210:91:2730:-226.767,-10.3037,0 +NC_000962.3 1552547 . G A 1975.32 . AB=0;AO=75;DP=78;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 1556787 . T C 2209.84 . AB=0;AO=91;DP=100;QA=2730;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:9:270:91:2730:-221.368,-5.50656,0 +NC_000962.3 1557405 . A C 1265.38 . AB=0;AO=51;DP=54;QA=1530;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:3:90:51:1530:-129.581,-7.85683,0 +NC_000962.3 1561939 . G C 1242.14 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1563717 . C T 2561.02 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1570566 . C A 2054.64 . AB=0;AO=79;DP=81;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:2:60:79:2370:-207.87,-18.6843,0 +NC_000962.3 1573660 . T G 2204.44 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 1576481 . T G 1225.22 . AB=0;AO=51;DP=55;QA=1530;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:4:120:51:1530:-126.882,-5.45825,0 +NC_000962.3 1576527 . G T 1094.83 . AB=0;AO=45;DP=48;QA=1350;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:3:90:45:1350:-113.384,-6.05065,0 +NC_000962.3 1577241 . G A 1737.15 . AB=0;AO=69;DP=73;QA=2070;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:4:120:69:2070:-175.475,-10.8768,0 +NC_000962.3 1588899 . G T 1792.13 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1593331 . G A 1308.03 . AB=0;AO=54;DP=60;QA=1620;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:5:150:54:1620:-132.281,-4.26272,0 +NC_000962.3 1594906 . G A 1784.84 . AB=0;AO=70;DP=73;QA=2100;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:3:90:70:2100:-180.874,-13.5764,0 +NC_000962.3 1595342 . T C 1813.47 . AB=0;AO=71;DP=76;QA=2130;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:3:90:71:2130:-183.573,-14.1774,0 +NC_000962.3 1606673 . G T 2004.75 . AB=0;AO=81;DP=91;QA=2430;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:6:180:81:2430:-202.471,-9.99195,0 +NC_000962.3 1608276 . A C 2371.43 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1609840 . A G 1214.46 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1612624 . T TATCGGTACCGGTGCGCCAGGG 848.659 . AB=0;AO=34;DP=50;QA=1020;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:50:2:60:34:1020:-86.385,-5.4384,0 +NC_000962.3 1613035 . T C 2579.69 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 1616061 . C T 1923.62 . AB=0;AO=78;DP=84;QA=2340;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:6:180:78:2340:-194.372,-8.7889,0 +NC_000962.3 1617302 . G T 2596.75 . AB=0;AO=99;DP=101;QA=2970;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:99:2970:-261.862,-24.7049,0 +NC_000962.3 1620181 . C G 1861.1 . AB=0;AO=73;DP=79;QA=2190;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:3:90:73:2190:-188.973,-14.7795,0 +NC_000962.3 1622580 . C A 1763.02 . AB=0;AO=68;DP=71;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:2:60:68:2040:-178.174,-15.6729,0 +NC_000962.3 1624791 . C G 1777.42 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 1625332 . C CGGT 1355.04 . AB=0;AO=54;DP=65;QA=1620;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:3:90:54:1620:-137.68,-9.05988,0 +NC_000962.3 1627351 . T C 2519.21 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1630148 . A C 2095.66 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1636826 . C A 508.677 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 1636918 . C T 314.774 . AB=0;AO=14;DP=15;QA=420;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:1:30:14:420:-35.0949,-1.51588,0 +NC_000962.3 1638364 . C T 1726.61 . AB=0;AO=72;DP=82;QA=2160;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:9:270:72:2160:-170.075,-0.0869424,0 +NC_000962.3 1639262 . G C 1184.19 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 1639594 . C A 1505.34 . AB=0;AO=60;DP=64;QA=1800;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:4:120:60:1800:-151.178,-8.16752,0 +NC_000962.3 1643864 . T C 2761.2 . AB=0;AO=105;DP=107;QA=3150;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:2:60:105:3150:-278.06,-26.511,0 +NC_000962.3 1645802 . T C 2578.65 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 1647436 . G A 2279.51 . AB=0;AO=92;DP=99;QA=2760;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:7:210:92:2760:-229.467,-10.6047,0 +NC_000962.3 1650072 . A G 2205.31 . AB=0;AO=83;DP=85;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1651308 . A G 1648.93 . AB=0;AO=67;DP=72;QA=2010;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:5:150:67:2010:-167.376,-7.87615,0 +NC_000962.3 1656498 . T C 1348.38 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1669158 . T C 2137 . AB=0;AO=82;DP=84;QA=2460;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:2:60:82:2460:-215.969,-19.5873,0 +NC_000962.3 1676290 . C A 2287.36 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1678706 . A C 1973.03 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 1687476 . C T 1946.75 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 1688064 . A G 1802.31 . AB=0;AO=74;DP=81;QA=2220;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:7:210:74:2220:-180.874,-5.18621,0 +NC_000962.3 1688300 . T C 2130.09 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1689349 . C T 2575.18 . AB=0;AO=98;DP=104;QA=2940;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:2:60:98:2940:-259.163,-24.7038,0 +NC_000962.3 1692141 . A C 4447 . AB=0;AO=167;DP=168;QA=5010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:168:1:30:167:5010:-448.135,-47.5735,0 +NC_000962.3 1693561 . A G 3466.5 . AB=0;AO=130;DP=131;QA=3900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:131:0:0:130:3900:-350.949,-39.1339,0 +NC_000962.3 1695037 . G A 3351.37 . AB=0;AO=128;DP=133;QA=3840;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:133:3:90:128:3840:-337.451,-31.3361,0 +NC_000962.3 1695796 . C T 4138.58 . AB=0;AO=162;DP=170;QA=4860;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:170:8:240:162:4860:-415.74,-29.2783,0 +NC_000962.3 1696671 . CA C 2382.49 . AB=0;AO=95;DP=105;QA=2850;QR=180;RO=6;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:105:6:180:95:2850:-240.26,-14.2154,0 +NC_000962.3 1698911 . G A 2717.66 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1699849 . G A 2620.81 . AB=0;AO=99;DP=100;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:99:2970:-264.562,-27.1034,0 +NC_000962.3 1701215 . C T 1934.79 . AB=0;AO=77;DP=82;QA=2310;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:4:120:77:2310:-197.072,-13.585,0 +NC_000962.3 1706119 . T C 1992.82 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1709432 . C T 2442 . AB=0;AO=92;DP=95;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1711670 . C T 2354.36 . AB=0;AO=90;DP=92;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:90:2700:-237.566,-21.9956,0 +NC_000962.3 1713192 . A G 2557.25 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1716472 . A G 2611.82 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1722200 . C G 2010.7 . AB=0;AO=80;DP=85;QA=2400;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:5:150:80:2400:-202.471,-11.7895,0 +NC_000962.3 1722228 . A C 1897.2 . AB=0;AO=74;DP=78;QA=2220;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:3:90:74:2220:-191.672,-15.0805,0 +NC_000962.3 1728837 . A G 3034.51 . AB=0;AO=114;DP=114;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:114:3420:-308.055,-34.3174,0 +NC_000962.3 1733134 . C T 1892.06 . AB=0;AO=80;DP=90;QA=2400;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:9:270:80:2400:-191.672,-2.49518,0 +NC_000962.3 1733325 . C G 1616.22 . AB=0;AO=66;DP=73;QA=1980;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:6:180:66:1980:-161.977,-5.4765,0 +NC_000962.3 1752561 . T C 1456.39 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1753519 . G GC 907.282 . AB=0;AO=35;DP=42;QA=1050;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 1756358 . CG C 2408.7 . AB=0;AO=92;DP=95;QA=2760;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:92:2760:-242.965,-22.8976,0 +NC_000962.3 1759252 . G T 1813.85 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1760292 . A G 2986.93 . AB=0;AO=112;DP=114;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 1778430 . T C 1854.03 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1789516 . A G 276.556 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1789564 . CC TA 461.309 . AB=0;AO=20;DP=22;QA=600;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:20:600:-53.9922,-6.0206,0 +NC_000962.3 1789650 . CGTCA TGTCG 1220.63 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 1792777 . TT CC 2153.53 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1798355 . G A 2377 . AB=0;AO=90;DP=92;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 1803265 . G A 2317.74 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1804409 . C A 2561.02 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1811375 . G T 1732.25 . AB=0;AO=68;DP=71;QA=2040;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:3:90:68:2040:-175.475,-12.9743,0 +NC_000962.3 1817976 . A T 2130.51 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1828595 . A G 2348.41 . AB=0;AO=90;DP=92;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:90:2700:-237.566,-21.9956,0 +NC_000962.3 1831220 . A C 2168.16 . AB=0;AO=85;DP=89;QA=2550;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:4:120:85:2550:-218.668,-15.6933,0 +NC_000962.3 1831226 . A G 2087.1 . AB=0;AO=81;DP=84;QA=2430;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:3:90:81:2430:-210.57,-16.8877,0 +NC_000962.3 1831288 . C T 1926.64 . AB=0;AO=75;DP=78;QA=2250;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:3:90:75:2250:-194.372,-15.0816,0 +NC_000962.3 1834177 . A C 2289.37 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1836286 . G C 1507.51 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1839759 . G C 1885.97 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1847919 . C G 1940.58 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1849051 . C T 1815.42 . AB=0;AO=74;DP=81;QA=2220;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:6:180:74:2220:-183.573,-7.88474,0 +NC_000962.3 1849609 . T C 2558.5 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1851376 . C T 2027.45 . AB=0;AO=79;DP=83;QA=2370;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:3:90:79:2370:-205.17,-16.5856,0 +NC_000962.3 1854300 . T C 1424.53 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1856777 . G C 2282.55 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1859559 . C A 2259.59 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1865818 . T C 1894.14 . AB=0;AO=77;DP=83;QA=2310;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:6:180:77:2310:-191.672,-8.48787,0 +NC_000962.3 1877744 . A C 1789.16 . AB=0;AO=73;DP=80;QA=2190;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:6:180:73:2190:-180.874,-7.58371,0 +NC_000962.3 1885385 . T G 2304.6 . AB=0;AO=89;DP=92;QA=2670;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:3:90:89:2670:-232.166,-19.296,0 +NC_000962.3 1885772 . G A 2179.43 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1888373 . T C 2084.71 . AB=0;AO=80;DP=88;QA=2400;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:2:60:80:2400:-210.57,-19.2852,0 +NC_000962.3 1892017 . T C 1706.23 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 1894300 . G GGTCTTGCCGC 1756.97 . AB=0;AO=67;DP=73;QA=2010;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:67:2010:-178.174,-17.7704,0 +NC_000962.3 1894422 . A G 1992.14 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1897608 . C T 2011.13 . AB=0;AO=79;DP=83;QA=2370;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:4:120:79:2370:-202.471,-13.8871,0 +NC_000962.3 1901493 . T C 2075.46 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1902337 . A C 1817.61 . AB=0;AO=72;DP=76;QA=2160;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:4:120:72:2160:-183.573,-11.7799,0 +NC_000962.3 1906078 . A G 2565.86 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 1907296 . G C 2529.57 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1914779 . A C 2264.99 . AB=0;AO=86;DP=90;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 1916137 . A G 2207.89 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1917972 . A G 1797.41 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1924008 . G A 1791.92 . AB=0;AO=75;DP=83;QA=2250;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:8:240:75:2250:-180.874,-3.08866,0 +NC_000962.3 1928544 . G C 1928.39 . AB=0;AO=81;DP=90;QA=2430;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:9:270:81:2430:-194.372,-2.49626,0 +NC_000962.3 1931179 . C A 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1931718 . G C 1291.38 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1933988 . G A 2310.58 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1944107 . A G 2279.09 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1944402 . T C 1645.64 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1950767 . T C 2909.45 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 1955760 . CGAA C 1133.96 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 1955941 . G C 1830.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1960284 . C A 1695.84 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1961735 . A G 1815.12 . AB=0;AO=72;DP=78;QA=2160;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:4:120:72:2160:-183.573,-12.0798,0 +NC_000962.3 1967026 . C T 2329.03 . AB=0;AO=90;DP=94;QA=2700;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:90:2700:-234.866,-19.897,0 +NC_000962.3 1967237 . C A 2504.05 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 1967543 . C A 2303.64 . AB=0;AO=89;DP=92;QA=2670;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:3:90:89:2670:-232.166,-19.296,0 +NC_000962.3 1971725 . G C 1991.23 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1980652 . G T 2193.97 . AB=0;AO=85;DP=88;QA=2550;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:85:2550:-221.368,-18.0919,0 +NC_000962.3 1983235 . TTCAA GTCAG 215.582 . AB=0;AO=12;DP=13;QA=360;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 1983291 . C T 738.701 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 1983313 . T G 944.493 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 1993808 . A T 245.628 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 2003827 . A C 2650.01 . AB=0;AO=102;DP=105;QA=3060;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:3:90:102:3060:-267.261,-23.2094,0 +NC_000962.3 2009290 . GC G 1808.68 . AB=0;AO=69;DP=72;QA=2070;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:69:2070:-183.554,-18.3825,0 +NC_000962.3 2010614 . G A 2244.88 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2022868 . T C 1692.03 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2023628 . C G 2677.91 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 2042626 . C T 1990.86 . AB=0;AO=78;DP=81;QA=2340;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:3:90:78:2340:-202.471,-15.9846,0 +NC_000962.3 2043307 . T G 1687.37 . AB=0;AO=66;DP=69;QA=1980;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:3:90:66:1980:-170.075,-12.3723,0 +NC_000962.3 2045310 . A G 607.046 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 2046586 . GC G 1667.94 . AB=0;AO=66;DP=73;QA=1980;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:73:3:90:66:1980:-170.075,-12.6722,0 +NC_000962.3 2049065 . T C 2031.2 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2049097 . G C 1901.98 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2050822 . G C 1424.53 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2051746 . T C 1853.82 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2051816 . C T 1922.73 . AB=0;AO=75;DP=79;QA=2250;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:3:90:75:2250:-194.372,-15.3815,0 +NC_000962.3 2052035 . G T 2612.17 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 2055271 . A G 1590.48 . AB=0;AO=61;DP=63;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 2057774 . A T 2126.21 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2058062 . GC G 2246.62 . AB=0;AO=86;DP=95;QA=2580;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:86:2580:-226.767,-21.0914,0 +NC_000962.3 2061433 . T TCCGCCGGCG 392.85 . AB=0;AO=16;DP=19;QA=480;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 2072313 . C A 2296.18 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 2074754 . C T 1745.99 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2078246 . C G 1981.18 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 2094911 . ACAGCGT A 1961.93 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2096186 . A G 2232.76 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 2108141 . T C 1507.52 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2108890 . A C 1890.37 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 2109523 . C CG 1051.09 . AB=0;AO=40;DP=41;QA=1200;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 2112832 . A C 2005.11 . AB=0;AO=80;DP=86;QA=2400;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:5:150:80:2400:-202.471,-12.0895,0 +NC_000962.3 2116903 . C T 1667.88 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 2122395 . C T 2467.94 . AB=0;AO=95;DP=99;QA=2850;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:3:90:95:2850:-248.364,-21.4021,0 +NC_000962.3 2122976 . C G 2015.98 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 2123169 . T G 2362.87 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2128870 . A G 1902.72 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2133468 . T TTCGCATGCCGTCACC 1527.91 . AB=0;AO=60;DP=66;QA=1800;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:2:60:60:1800:-156.577,-13.2646,0 +NC_000962.3 2135154 . G T 2065.17 . AB=0;AO=83;DP=89;QA=2490;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:6:180:83:2490:-207.87,-10.2941,0 +NC_000962.3 2135870 . T C 2074.14 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2137521 . A ACTCCGATCAC 1717.25 . AB=0;AO=66;DP=73;QA=1980;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 2138453 . C T 2056.04 . AB=0;AO=78;DP=80;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:78:2340:-207.87,-21.0818,0 +NC_000962.3 2142266 . C A 1342.38 . AB=0;AO=54;DP=57;QA=1620;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:3:90:54:1620:-137.68,-8.75992,0 +NC_000962.3 2143328 . G C 1784.77 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 2147022 . A C 1404.48 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2151222 . T G 1764.6 . AB=0;AO=71;DP=77;QA=2130;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:5:150:71:2130:-178.174,-9.38023,0 +NC_000962.3 2154724 . C A 2863.86 . AB=0;AO=109;DP=111;QA=3270;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:2:60:109:3270:-288.858,-27.7152,0 +NC_000962.3 2158109 . T C 1773.56 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2160998 . G A 2126.66 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 2161343 . G GT 2108.26 . AB=0;AO=80;DP=87;QA=2400;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:80:2400:-213.269,-21.6838,0 +NC_000962.3 2163790 . A C 660.07 . AB=0;AO=28;DP=28;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:28:840:-75.889,-8.42884,0 +NC_000962.3 2165286 . A C 1314.47 . AB=0;AO=53;DP=55;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 2165503 . T A 647.033 . AB=0;AO=30;DP=33;QA=900;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:3:90:30:900:-72.8895,-1.5352,0 +NC_000962.3 2167926 . A G 2073.47 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2172380 . A C 2876.63 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 2173860 . A C 2862.39 . AB=0;AO=108;DP=110;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:1:30:108:3240:-288.858,-30.1127,0 +NC_000962.3 2177366 . C T 1832.98 . AB=0;AO=71;DP=73;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:2:60:71:2130:-186.273,-16.276,0 +NC_000962.3 2179825 . G C 2199.76 . AB=0;AO=91;DP=100;QA=2730;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:9:270:91:2730:-221.368,-5.50656,0 +NC_000962.3 2185674 . A G 2436.95 . AB=0;AO=93;DP=96;QA=2790;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:2:60:93:2790:-245.664,-23.1986,0 +NC_000962.3 2187587 . G C 1883.37 . AB=0;AO=77;DP=83;QA=2310;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:6:180:77:2310:-191.672,-8.48787,0 +NC_000962.3 2191498 . G T 1246.42 . AB=0;AO=49;DP=52;QA=1470;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:2:60:49:1470:-126.882,-9.95331,0 +NC_000962.3 2195864 . G A 1848.41 . AB=0;AO=77;DP=88;QA=2310;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:8:240:77:2310:-186.273,-3.99067,0 +NC_000962.3 2199052 . C G 2853.11 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 2201808 . C G 1756.48 . AB=0;AO=68;DP=70;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:68:2040:-178.174,-15.3729,0 +NC_000962.3 2202500 . C T 1666.22 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 2204949 . C T 2304.62 . AB=0;AO=90;DP=96;QA=2700;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:4:120:90:2700:-232.166,-17.4984,0 +NC_000962.3 2207591 . T TC 2896.92 . AB=0;AO=109;DP=111;QA=3270;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 2209465 . G A 1784.01 . AB=0;AO=68;DP=70;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:68:2040:-180.874,-18.0715,0 +NC_000962.3 2211826 . A G 2798.65 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2216443 . C A 1707.3 . AB=0;AO=66;DP=68;QA=1980;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:66:1980:-172.775,-14.7709,0 +NC_000962.3 2220512 . T G 2367.17 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2221584 . G C 2664.76 . AB=0;AO=101;DP=102;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:101:3030:-269.961,-27.7055,0 +NC_000962.3 2223293 . T C 2637.9 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 2225999 . C T 2080.61 . AB=0;AO=81;DP=85;QA=2430;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:3:90:81:2430:-210.57,-17.1877,0 +NC_000962.3 2228967 . A G 2683.9 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 2229801 . C G 2445.77 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 2240152 . G A 2841.11 . AB=0;AO=109;DP=112;QA=3270;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:3:90:109:3270:-286.159,-25.3166,0 +NC_000962.3 2241031 . AG A 2030.21 . AB=0;AO=83;DP=92;QA=2490;QR=210;RO=7;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:92:7:210:83:2490:-205.17,-8.19543,0 +NC_000962.3 2244421 . G T 1786.28 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 2245864 . C A 2353.18 . AB=0;AO=95;DP=102;QA=2850;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:7:210:95:2850:-237.566,-11.5078,0 +NC_000962.3 2247677 . A C 1964.92 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2251605 . G A 2026.1 . AB=0;AO=78;DP=82;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:78:2340:-205.17,-18.6832,0 +NC_000962.3 2251999 . A G 2130.09 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2260100 . C T 1669.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2260525 . C T 1812.86 . AB=0;AO=69;DP=71;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 2264341 . A C 2106.53 . AB=0;AO=82;DP=85;QA=2460;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:3:90:82:2460:-213.269,-17.1888,0 +NC_000962.3 2264782 . C A 1615.3 . AB=0;AO=63;DP=67;QA=1890;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:2:60:63:1890:-164.676,-14.1677,0 +NC_000962.3 2265059 . T G 2696.69 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 2267015 . T C 2350.99 . AB=0;AO=93;DP=100;QA=2790;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:5:150:93:2790:-237.566,-16.0029,0 +NC_000962.3 2268433 . C A 3316.12 . AB=0;AO=128;DP=133;QA=3840;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:133:4:120:128:3840:-334.752,-28.9375,0 +NC_000962.3 2268627 . G C 1427.37 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2269780 . T C 2315.76 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2270102 . A G 1716.3 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2273733 . TC T 1733.98 . AB=0;AO=68;DP=72;QA=2040;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:72:3:90:68:2040:-175.475,-13.2743,0 +NC_000962.3 2282787 . C T 2479.4 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 2283191 . G C 1488.36 . AB=0;AO=57;DP=59;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 2283528 . C A 1713.51 . AB=0;AO=69;DP=74;QA=2070;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:5:150:69:2070:-172.775,-8.47821,0 +NC_000962.3 2285251 . C A 3447.34 . AB=0;AO=129;DP=129;QA=3870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:129:0:0:129:3870:-348.55,-38.8329,0 +NC_000962.3 2287121 . A G 2547.94 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 2288085 . G C 2618.22 . AB=0;AO=102;DP=108;QA=3060;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:4:120:102:3060:-264.562,-21.1107,0 +NC_000962.3 2294007 . T C 2268.06 . AB=0;AO=88;DP=93;QA=2640;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:3:90:88:2640:-229.467,-19.2949,0 +NC_000962.3 2296042 . G C 1865.74 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 2296181 . A G 945.059 . AB=0;AO=40;DP=44;QA=1200;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:4:120:40:1200:-97.1859,-2.14692,0 +NC_000962.3 2298194 . G T 1464.07 . AB=0;AO=57;DP=60;QA=1710;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:2:60:57:1710:-148.479,-12.3616,0 +NC_000962.3 2300237 . A G 1663.24 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2300546 . A T 1585.53 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2300552 . TGGA GGGG 1478.42 . AB=0;AO=56;DP=59;QA=1680;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:56:1680:-151.223,-16.8577,0 +NC_000962.3 2302033 . G A 1468.03 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2311099 . C G 1511.73 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2314689 . C A 1263.43 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2315386 . C A 2717.83 . AB=0;AO=103;DP=104;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:103:3090:-275.36,-28.3076,0 +NC_000962.3 2321975 . T C 1580.67 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2328543 . T C 1901.98 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2329533 . A G 1387.86 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2331620 . A C 2097.41 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2331789 . G T 1913.01 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2334007 . A G 2799.8 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2335075 . A G 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2335494 . A G 1697.18 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2335996 . G A 2137.17 . AB=0;AO=86;DP=92;QA=2580;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:6:180:86:2580:-215.969,-11.1971,0 +NC_000962.3 2337179 . C T 2197.45 . AB=0;AO=90;DP=98;QA=2700;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:8:240:90:2700:-221.368,-7.60411,0 +NC_000962.3 2338810 . TA CG 2276.24 . AB=0;AO=90;DP=97;QA=2700;QR=150;RO=5;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:97:5:150:90:2700:-229.467,-15.0998,0 +NC_000962.3 2339255 . A G 1992.85 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2340621 . C G 1080.81 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2341636 . C G 2318.33 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2342649 . A AGGCGTACACAC 1508.43 . AB=0;AO=57;DP=60;QA=1710;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 2344246 . G C 2156.09 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2344499 . T G 2003.38 . AB=0;AO=77;DP=79;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:77:2310:-202.471,-18.0822,0 +NC_000962.3 2345037 . C A 1808.36 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 2346318 . G A 1398.69 . AB=0;AO=57;DP=61;QA=1710;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:4:120:57:1710:-143.079,-7.26443,0 +NC_000962.3 2347856 . G A 1535.59 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2348446 . C G 1887.43 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2357268 . TGCC T 660.25 . AB=0;AO=26;DP=27;QA=780;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:26:780:-70.0741,-7.82678,0 +NC_000962.3 2358029 . T TG 2071.57 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2361604 . C G 1954.39 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2362041 . C A 1870.98 . AB=0;AO=72;DP=75;QA=2160;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:2:60:72:2160:-188.973,-16.877,0 +NC_000962.3 2368564 . TA T 2256.1 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.437,-25.5876,0 +NC_000962.3 2369186 . G C 2263.85 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2369326 . C G 2156.93 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2381572 . AC A 2206.14 . AB=0;AO=83;DP=86;QA=2490;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2382208 . G A 2296.18 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 2386389 . G A 2072.37 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2388641 . G A 2659.79 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 2391205 . G A 1405.51 . AB=0;AO=55;DP=58;QA=1650;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:2:60:55:1650:-143.079,-11.7595,0 +NC_000962.3 2399734 . G A 1424.91 . AB=0;AO=56;DP=60;QA=1680;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:2:60:56:1680:-145.779,-12.0605,0 +NC_000962.3 2411472 . G C 1437.29 . AB=0;AO=55;DP=58;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 2413246 . C A 1265.96 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2415656 . G C 1336.96 . AB=0;AO=51;DP=55;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 2419707 . G A 1251.63 . AB=0;AO=52;DP=58;QA=1560;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:5:150:52:1560:-126.882,-3.66066,0 +NC_000962.3 2421816 . A G 1640.98 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2421975 . G GGGAA 1031.85 . AB=0;AO=40;DP=47;QA=1200;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:47:1:30:40:1200:-105.285,-9.64262,0 +NC_000962.3 2424925 . A G 2310.8 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2425471 . T C 1670.95 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2433276 . A C 2543.07 . AB=0;AO=98;DP=101;QA=2940;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:3:90:98:2940:-256.463,-22.0052,0 +NC_000962.3 2439166 . CCATTTCGGCA C 882.968 . AB=0;AO=38;DP=45;QA=1140;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:4:120:38:1140:-91.7867,-1.84482,0 +NC_000962.3 2440926 . G T 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2448458 . C T 2184.05 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2459165 . G T 1921.26 . AB=0;AO=78;DP=86;QA=2340;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:6:180:78:2340:-194.372,-9.08886,0 +NC_000962.3 2462871 . G A 2044.26 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 2466736 . G A 1536.07 . AB=0;AO=60;DP=63;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:2:60:60:1800:-156.577,-13.2646,0 +NC_000962.3 2470591 . A C 1346.72 . AB=0;AO=51;DP=53;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 2491597 . G T 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2499726 . G A 1941.04 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2505085 . G A 1869.73 . AB=0;AO=72;DP=74;QA=2160;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:72:2160:-188.973,-16.577,0 +NC_000962.3 2509140 . G C 1713.3 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 2509722 . A G 2769.4 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 2510350 . C G 1851.27 . AB=0;AO=75;DP=81;QA=2250;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:6:180:75:2250:-186.273,-7.88581,0 +NC_000962.3 2516567 . G C 2017.38 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2521342 . T C 1546.74 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2521428 . A G 1940.99 . AB=0;AO=75;DP=78;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:75:2250:-197.072,-17.7801,0 +NC_000962.3 2523205 . G GCGC 831.892 . AB=0;AO=32;DP=33;QA=960;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:32:960:-86.3875,-9.63296,0 +NC_000962.3 2525722 . CG C 1854.03 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2526974 . T C 1832.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2529680 . A G 2345.92 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2531742 . A G 2525.3 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 2533377 . T C 2188.17 . AB=0;AO=83;DP=85;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 2534562 . GGA G 1756.96 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2536599 . C T 1438.67 . AB=0;AO=57;DP=62;QA=1710;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:3:90:57:1710:-145.779,-9.96297,0 +NC_000962.3 2536628 . G GA 1247.48 . AB=0;AO=49;DP=54;QA=1470;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:49:1470:-126.882,-9.95331,0 +NC_000962.3 2543395 . T C 2084.67 . AB=0;AO=81;DP=84;QA=2430;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:3:90:81:2430:-210.57,-16.8877,0 +NC_000962.3 2546684 . C A 1598.64 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2548700 . C T 2108.59 . AB=0;AO=81;DP=83;QA=2430;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:2:60:81:2430:-213.269,-19.2863,0 +NC_000962.3 2551576 . CT GC 1593.85 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2562644 . G T 1970.81 . AB=0;AO=79;DP=85;QA=2370;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:5:150:79:2370:-199.771,-11.7885,0 +NC_000962.3 2564368 . G GC 2203.24 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2566768 . A GC 1971.42 . AB=0;AO=75;DP=86;QA=2250;QR=30;RO=1;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 2573756 . C A 1365.23 . AB=0;AO=53;DP=55;QA=1590;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:2:60:53:1590:-137.68,-10.8575,0 +NC_000962.3 2578626 . A G 2506.14 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2581052 . G A 2162.66 . AB=0;AO=82;DP=84;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 2584903 . C T 1788.77 . AB=0;AO=70;DP=73;QA=2100;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:3:90:70:2100:-180.874,-13.5764,0 +NC_000962.3 2586076 . C G 1678.62 . AB=0;AO=67;DP=72;QA=2010;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:4:120:67:2010:-170.075,-10.5747,0 +NC_000962.3 2586127 . A G 1805.23 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2589036 . G C 2061.6 . AB=0;AO=83;DP=90;QA=2490;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:6:180:83:2490:-207.87,-10.594,0 +NC_000962.3 2589216 . G C 2611.56 . AB=0;AO=99;DP=100;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:99:2970:-264.562,-27.1034,0 +NC_000962.3 2598400 . A G 2209.97 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2600260 . A G 1551.5 . AB=0;AO=62;DP=67;QA=1860;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:4:120:62:1860:-156.577,-9.06954,0 +NC_000962.3 2601576 . T G 3778.01 . AB=0;AO=144;DP=147;QA=4320;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:147:3:90:144:4320:-380.645,-35.8526,0 +NC_000962.3 2601760 . G A 2578.33 . AB=0;AO=101;DP=107;QA=3030;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:5:150:101:3030:-259.163,-18.4111,0 +NC_000962.3 2608117 . C A 2342.87 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 2612256 . G T 1751.14 . AB=0;AO=71;DP=80;QA=2130;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:5:150:71:2130:-178.174,-9.38023,0 +NC_000962.3 2612632 . C A 3067.76 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 2614909 . GC G 2269.85 . AB=0;AO=91;DP=98;QA=2730;QR=180;RO=6;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:98:6:180:91:2730:-229.459,-13.0538,0 +NC_000962.3 2619271 . T C 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2625924 . T C 1505.42 . AB=0;AO=57;DP=59;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 2626004 . G A 1696.11 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2626011 . G A 1643.42 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2626018 . T C 1611.82 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2626513 . TT AG 813.253 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 2627618 . C A 2290.57 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2627946 . A G 2495.06 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2630740 . T C 2243.09 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 2631371 . C T 2694.99 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 2632341 . C CA 1910.49 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2637162 . C T 1433.55 . AB=0;AO=56;DP=58;QA=1680;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:2:60:56:1680:-145.779,-11.7606,0 +NC_000962.3 2637541 . C T 2047.43 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2642383 . C T 1948 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2656225 . A G 2340.38 . AB=0;AO=88;DP=91;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2660319 . C G 1776.73 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2662243 . G A 2060.01 . AB=0;AO=79;DP=81;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:2:60:79:2370:-207.87,-18.6843,0 +NC_000962.3 2663236 . C T 2114.54 . AB=0;AO=85;DP=94;QA=2550;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:6:180:85:2550:-213.269,-11.1961,0 +NC_000962.3 2663795 . G A 1412.54 . AB=0;AO=57;DP=61;QA=1710;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:4:120:57:1710:-143.079,-7.26443,0 +NC_000962.3 2673818 . C G 2277.88 . AB=0;AO=91;DP=98;QA=2730;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:6:180:91:2730:-229.467,-13.0023,0 +NC_000962.3 2680658 . T G 2458.99 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 2692100 . C T 2033.26 . AB=0;AO=81;DP=86;QA=2430;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:5:150:81:2430:-205.17,-12.0906,0 +NC_000962.3 2695378 . C G 3045.14 . AB=0;AO=114;DP=114;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:114:3420:-308.055,-34.3174,0 +NC_000962.3 2695535 . C A 2501 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2697489 . C T 2107.81 . AB=0;AO=82;DP=85;QA=2460;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:3:90:82:2460:-213.269,-17.1888,0 +NC_000962.3 2704884 . A ACAGCGACCATATCGCCGAGCT 1158.23 . AB=0;AO=44;DP=48;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 2706663 . G T 1790.7 . AB=0;AO=71;DP=75;QA=2130;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:4:120:71:2130:-180.874,-11.4789,0 +NC_000962.3 2711722 . T G 1428.45 . AB=0;AO=57;DP=61;QA=1710;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:3:90:57:1710:-145.779,-9.96297,0 +NC_000962.3 2713795 . C T 1510.51 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 2716409 . T C 1736.17 . AB=0;AO=70;DP=75;QA=2100;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:5:150:70:2100:-175.475,-8.77924,0 +NC_000962.3 2718852 . T G 2776.38 . AB=0;AO=105;DP=106;QA=3150;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:105:3150:-280.759,-28.9096,0 +NC_000962.3 2721562 . C G 2174.38 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2723506 . T C 3011.32 . AB=0;AO=113;DP=113;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:113:3390:-305.356,-34.0164,0 +NC_000962.3 2724180 . TCACGATCGGGTCTCCTCTAG T 1672.93 . AB=0;AO=65;DP=68;QA=1950;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 2729058 . A C 3022.48 . AB=0;AO=117;DP=121;QA=3510;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:4:120:117:3510:-305.056,-25.3262,0 +NC_000962.3 2734074 . T C 1939.87 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2734481 . TA T 2406.63 . AB=0;AO=92;DP=95;QA=2760;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:92:2760:-242.945,-22.9377,0 +NC_000962.3 2737572 . C A 1699.33 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2738274 . A C 2453.8 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 2740693 . T C 1880.79 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2741209 . G A 2846.07 . AB=0;AO=107;DP=108;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 2751804 . C T 1972.34 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 2752122 . G C 1904.71 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 2752698 . C A 2583.3 . AB=0;AO=99;DP=101;QA=2970;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:99:2970:-261.862,-24.7049,0 +NC_000962.3 2760152 . A G 1850.61 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2775361 . C T 2003.15 . AB=0;AO=77;DP=80;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:77:2310:-202.471,-18.3822,0 +NC_000962.3 2779136 . T C 2425.13 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2786952 . A G 2076.78 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2789798 . G T 1969.12 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 2791098 . C T 1705.18 . AB=0;AO=65;DP=67;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 2793810 . C A 2350.31 . AB=0;AO=91;DP=94;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:91:2730:-237.566,-19.898,0 +NC_000962.3 2794071 . G A 2307.94 . AB=0;AO=90;DP=93;QA=2700;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:3:90:90:2700:-234.866,-19.597,0 +NC_000962.3 2800623 . C T 1974.22 . AB=0;AO=77;DP=83;QA=2310;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:3:90:77:2310:-199.771,-15.9836,0 +NC_000962.3 2807486 . C A 3286.68 . AB=0;AO=124;DP=125;QA=3720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:125:1:30:124:3720:-332.052,-34.6292,0 +NC_000962.3 2809621 . T C 2100.46 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2809633 . A C 1711.33 . AB=0;AO=72;DP=80;QA=2160;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:8:240:72:2160:-172.775,-2.18557,0 +NC_000962.3 2817502 . A C 2137.18 . AB=0;AO=84;DP=88;QA=2520;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:4:120:84:2520:-215.969,-15.3922,0 +NC_000962.3 2818837 . A G 2771.72 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 2821342 . C T 2206.14 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2824449 . C T 1970.49 . AB=0;AO=83;DP=94;QA=2490;QR=300;RO=10;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:10:300:83:2490:-197.072,-0.999693,0 +NC_000962.3 2825466 . G A 1831.07 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2825581 . T G 1714.06 . AB=0;AO=67;DP=70;QA=2010;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:3:90:67:2010:-172.775,-12.6733,0 +NC_000962.3 2827984 . G T 2194.73 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2828019 . T C 2223.09 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2829779 . T C 553.9 . AB=0;AO=24;DP=26;QA=720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:1:30:24:720:-62.091,-4.82614,0 +NC_000962.3 2830525 . C A 1550.88 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2833329 . G A 2010.35 . AB=0;AO=85;DP=95;QA=2550;QR=300;RO=10;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:10:300:85:2550:-202.471,-1.3018,0 +NC_000962.3 2836774 . G A 1734.52 . AB=0;AO=67;DP=69;QA=2010;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:67:2010:-175.475,-15.0719,0 +NC_000962.3 2841022 . A G 1639.87 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2845445 . G A 1298.39 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 2847281 . A G 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2850631 . T C 1964.73 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 2851162 . AACATT C 1333.77 . AB=0;AO=55;DP=60;QA=1650;QR=150;RO=5;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:60:5:150:55:1650:-134.98,-4.26379,0 +NC_000962.3 2855259 . A G 2504.24 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2865760 . A G 2257 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 2865882 . T C 2317.54 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2866607 . G A 540.161 . AB=0;AO=25;DP=27;QA=750;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:2:60:25:750:-62.091,-2.42863,0 +NC_000962.3 2866647 . G A 349.235 . AB=0;AO=17;DP=19;QA=510;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:2:60:17:510:-40.4941,-0.0203939,0 +NC_000962.3 2867207 . C G 1048.74 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 2867230 . GC AT 893.136 . AB=0;AO=38;DP=38;QA=1140;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:38:1140:-102.885,-11.4391,0 +NC_000962.3 2867236 . ACCCCGACAA GCCCTGACAC 825.128 . AB=0;AO=35;DP=38;QA=1050;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 2867251 . CGCA GGCG 868.589 . AB=0;AO=37;DP=38;QA=1110;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2867298 . C A 506.018 . AB=0;AO=24;DP=27;QA=720;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:2:60:24:720:-59.3914,-2.42756,0 +NC_000962.3 2867552 . A G 230.022 . AB=0;AO=11;DP=12;QA=330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:1:30:11:330:-26.9961,-0.612794,0 +NC_000962.3 2867575 . T C 375.159 . AB=0;AO=17;DP=18;QA=510;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:1:30:17:510:-43.1938,-2.41897,0 +NC_000962.3 2867594 . G A 470.252 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 2867756 . T C 1272.87 . AB=0;AO=49;DP=51;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:49:1470:-129.581,-12.3519,0 +NC_000962.3 2867880 . TA T 1619.32 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2880702 . G C 1827.34 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2881382 . C T 2636.71 . AB=0;AO=103;DP=108;QA=3090;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:5:150:103:3090:-264.562,-18.7132,0 +NC_000962.3 2881597 . AG A 2927.09 . AB=0;AO=110;DP=113;QA=3300;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 2881974 . G A 2517.31 . AB=0;AO=98;DP=104;QA=2940;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:4:120:98:2940:-253.763,-19.9066,0 +NC_000962.3 2884068 . A C 2448.03 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 2886570 . A G 2902.64 . AB=0;AO=109;DP=112;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 2886958 . TACTGCG T 1365.27 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 2888201 . T C 1349.72 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2889633 . T C 1669.58 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2891267 . C T 1802.34 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 2891728 . A G 1829.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2892847 . G C 2544.57 . AB=0;AO=100;DP=106;QA=3000;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:5:150:100:3000:-256.463,-18.1101,0 +NC_000962.3 2894208 . G A 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2895032 . G A 1936.59 . AB=0;AO=75;DP=78;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:75:2250:-197.072,-17.7801,0 +NC_000962.3 2898522 . T C 2318.11 . AB=0;AO=90;DP=94;QA=2700;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:90:2700:-234.866,-19.897,0 +NC_000962.3 2903439 . G A 1794.85 . AB=0;AO=74;DP=81;QA=2220;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:7:210:74:2220:-180.874,-5.18621,0 +NC_000962.3 2910461 . G T 2124.25 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2911293 . C G 2075.46 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2912294 . T G 1800.45 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2914055 . G A 1274.61 . AB=0;AO=49;DP=51;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:49:1470:-129.581,-12.3519,0 +NC_000962.3 2922846 . CCA TCT 675.062 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 2923391 . T C 1128.6 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 2925962 . T C 2102.21 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2927939 . T C 2211 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2939373 . G C 2157.15 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2939657 . T C 1421.98 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2948230 . G A 2348.79 . AB=0;AO=91;DP=94;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:91:2730:-237.566,-19.898,0 +NC_000962.3 2954439 . T C 3224.84 . AB=0;AO=121;DP=122;QA=3630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:0:0:121:3630:-326.653,-36.4246,0 +NC_000962.3 2955957 . A C 2477.94 . AB=0;AO=96;DP=99;QA=2880;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:3:90:96:2880:-251.064,-21.4032,0 +NC_000962.3 2969197 . A G 2016.48 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2974933 . A G 1311.15 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2975227 . T G 2028.92 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 2975454 . C A 1774.05 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2976564 . C T 1723.77 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2976575 . G A 1825.08 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2980861 . A G 2343.58 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2983095 . A G 886.507 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2983873 . A G 1297.67 . AB=0;AO=52;DP=56;QA=1560;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:3:90:52:1560:-132.281,-8.45782,0 +NC_000962.3 2984740 . A G 1511.43 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2988630 . C G 1700.69 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 2994187 . T C 1941.52 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3003115 . C G 1828.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3005185 . G T 2312.77 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3009692 . A G 2691.29 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 3009834 . A G 2562.48 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 3010420 . A G 2312.95 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3010993 . C T 1517.03 . AB=0;AO=60;DP=63;QA=1800;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:3:90:60:1800:-153.878,-10.5661,0 +NC_000962.3 3012950 . G T 1785.53 . AB=0;AO=68;DP=70;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:68:2040:-180.874,-18.0715,0 +NC_000962.3 3017465 . T C 2313.76 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3021892 . GTTCGACGAC G 1900.81 . AB=0;AO=74;DP=79;QA=2220;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:79:3:90:74:2220:-191.672,-15.0805,0 +NC_000962.3 3024021 . C A 2119.6 . AB=0;AO=88;DP=97;QA=2640;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:9:270:88:2640:-213.269,-4.60347,0 +NC_000962.3 3027798 . T C 2602.82 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3031168 . A G 2020.57 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3033189 . G A 2136.39 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 3036826 . C T 2221.27 . AB=0;AO=88;DP=92;QA=2640;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:4:120:88:2640:-226.767,-16.5964,0 +NC_000962.3 3037377 . T C 2071.69 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3041871 . G T 1697.33 . AB=0;AO=66;DP=70;QA=1980;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:66:1980:-172.775,-15.0708,0 +NC_000962.3 3051182 . C T 1805.63 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 3054081 . A G 1803.45 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3054321 . A G 1116.82 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3069167 . A G 1798.64 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3072914 . G A 1646.46 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3078178 . C T 2261.46 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3079877 . A G 2614.11 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 3080795 . A G 2962.13 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 3086788 . T C 3307.72 . AB=0;AO=124;DP=125;QA=3720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:125:0:0:124:3720:-334.752,-37.3277,0 +NC_000962.3 3103682 . T C 1990.77 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3104189 . A G 2579.69 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 3106077 . G A 2098.06 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3109687 . C CTT 1566.21 . AB=0;AO=61;DP=65;QA=1830;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:2:60:61:1830:-159.277,-13.5657,0 +NC_000962.3 3111476 . C T 1949.62 . AB=0;AO=77;DP=82;QA=2310;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:4:120:77:2310:-197.072,-13.585,0 +NC_000962.3 3112877 . G A 1052.38 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3113872 . A T 1994.45 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3115384 . G C 2483.69 . AB=0;AO=106;DP=120;QA=3180;QR=390;RO=13;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:13:390:106:3180:-251.064,-0.727643,0 +NC_000962.3 3118000 . A G 1698.79 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3130525 . C T 2706.38 . AB=0;AO=106;DP=111;QA=3180;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:5:150:106:3180:-272.661,-19.6163,0 +NC_000962.3 3131251 . C G 2424.24 . AB=0;AO=94;DP=98;QA=2820;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:3:90:94:2820:-245.664,-21.1011,0 +NC_000962.3 3131469 . T TTGTCGGCGA 1537.45 . AB=0;AO=62;DP=71;QA=1860;QR=150;RO=5;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:5:150:62:1860:-153.878,-6.67096,0 +NC_000962.3 3133054 . CG GC 1374.11 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3133536 . T C 1652.74 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3135606 . A G 2293.41 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 3137058 . G A 2449.15 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3137736 . G T 1104.01 . AB=0;AO=43;DP=45;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:43:1290:-113.384,-10.5457,0 +NC_000962.3 3144623 . C T 1486.34 . AB=0;AO=60;DP=64;QA=1800;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:4:120:60:1800:-151.178,-8.16752,0 +NC_000962.3 3156201 . C CG 1596.1 . AB=0;AO=61;DP=65;QA=1830;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 3162805 . C G 782.48 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 3174496 . A G 2307.39 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3174692 . AC A 2246.42 . AB=0;AO=89;DP=97;QA=2670;QR=150;RO=5;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:97:5:150:89:2670:-226.753,-14.8238,0 +NC_000962.3 3177361 . G A 969.373 . AB=0;AO=37;DP=39;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 3177452 . C A 1211.23 . AB=0;AO=47;DP=48;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:1:30:47:1410:-124.182,-11.4499,0 +NC_000962.3 3177884 . C A 1995.37 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3180988 . C A 2055.73 . AB=0;AO=79;DP=81;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:2:60:79:2370:-207.87,-18.6843,0 +NC_000962.3 3181980 . G A 2290.35 . AB=0;AO=92;DP=98;QA=2760;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:6:180:92:2760:-232.166,-13.0033,0 +NC_000962.3 3186860 . T G 1691.49 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3189242 . A G 2691.89 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 3190145 . TC T 1653.91 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3194241 . C CG 1719.42 . AB=0;AO=65;DP=67;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:65:1950:-175.445,-19.567,0 +NC_000962.3 3200282 . C T 2205.99 . AB=0;AO=86;DP=99;QA=2580;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:3:90:86:2580:-224.068,-18.6928,0 +NC_000962.3 3200334 . C T 2219.58 . AB=0;AO=86;DP=88;QA=2580;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:2:60:86:2580:-226.767,-20.7915,0 +NC_000962.3 3205504 . C T 1583.7 . AB=0;AO=62;DP=66;QA=1860;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:2:60:62:1860:-161.977,-13.8667,0 +NC_000962.3 3209156 . G A 2080.8 . AB=0;AO=79;DP=82;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 3215622 . CG C 2049.22 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3226181 . A C 1666.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3228143 . G T 1570.48 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 3238119 . CGTG C 1882.98 . AB=0;AO=71;DP=74;QA=2130;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 3238637 . G A 2299.94 . AB=0;AO=88;DP=92;QA=2640;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:88:2640:-232.166,-21.6935,0 +NC_000962.3 3242617 . C T 3161.27 . AB=0;AO=120;DP=124;QA=3600;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:124:2:60:120:3600:-318.554,-31.3264,0 +NC_000962.3 3247316 . C G 1754.33 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3247851 . GCCCGG ACTCGC 1283.1 . AB=0;AO=49;DP=51;QA=1470;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3247865 . GCAAA TAGGG 1340.61 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 3247874 . GTTT ATTC 1312.22 . AB=0;AO=50;DP=52;QA=1500;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 3247883 . T C 1473.58 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3248074 . GC AT 1875.2 . AB=0;AO=71;DP=74;QA=2130;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 3249025 . T G 1922.76 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 3256494 . A G 2368.33 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3265349 . G C 1818.39 . AB=0;AO=74;DP=80;QA=2220;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:6:180:74:2220:-183.573,-7.58478,0 +NC_000962.3 3266030 . A G 1414.73 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3268041 . C T 1547.86 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 3269581 . A G 1854.51 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3270784 . A G 2399.88 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 3276703 . T G 2156.72 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3284855 . C T 2009.84 . AB=0;AO=80;DP=85;QA=2400;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:5:150:80:2400:-202.471,-11.7895,0 +NC_000962.3 3293470 . C T 1480.97 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3296371 . G GCCGCGGC 1526.09 . AB=0;AO=58;DP=63;QA=1740;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3296843 . A G 2504.97 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 3301648 . T G 3169.96 . AB=0;AO=123;DP=128;QA=3690;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:128:5:150:123:3690:-318.554,-24.7338,0 +NC_000962.3 3304966 . G A 2382.59 . AB=0;AO=91;DP=93;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:2:60:91:2730:-240.265,-22.2966,0 +NC_000962.3 3308606 . G A 3060.85 . AB=0;AO=115;DP=119;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:119:0:0:115:3450:-310.455,-34.6185,0 +NC_000962.3 3308850 . AT GG 2224.24 . AB=0;AO=87;DP=92;QA=2610;QR=120;RO=4;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:92:4:120:87:2610:-224.068,-16.5953,0 +NC_000962.3 3310626 . T C 1823.04 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3312805 . C A 2431.45 . AB=0;AO=94;DP=97;QA=2820;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:3:90:94:2820:-245.664,-20.8011,0 +NC_000962.3 3314412 . A G 1673.13 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3316955 . A C 1588.4 . AB=0;AO=64;DP=68;QA=1920;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:4:120:64:1920:-161.977,-9.37164,0 +NC_000962.3 3326554 . A C 2364.35 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3331361 . ACG A 1343.7 . AB=0;AO=51;DP=53;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3335708 . G C 1726.14 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3336646 . T A 373.38 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 3336825 . T C 554.846 . AB=0;AO=23;DP=24;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:23:690:-62.091,-6.92369,0 +NC_000962.3 3338603 . G C 1459.4 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 3352932 . C G 1375.75 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3358235 . A T 2745.2 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3363338 . A G 2524.17 . AB=0;AO=96;DP=97;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:96:2880:-256.463,-26.2003,0 +NC_000962.3 3367765 . G A 2233.71 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3373397 . G A 2270.01 . AB=0;AO=88;DP=91;QA=2640;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:3:90:88:2640:-229.467,-18.9949,0 +NC_000962.3 3375165 . A C 1634.3 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3379708 . GAGCG CAGCC 799.36 . AB=0;AO=32;DP=33;QA=960;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:32:960:-86.3875,-9.63296,0 +NC_000962.3 3379718 . T C 850.147 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3379726 . CCCCGGCCAAC ACCCCGTCACA 855.983 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3379742 . T C 907.803 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 3379751 . A C 1040.79 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3379757 . A C 1045.12 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3379763 . G A 1077.48 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 3379784 . CCCCC ACCCG 1377.83 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.144,-15.9546,0 +NC_000962.3 3380534 . A G 446.671 . AB=0;AO=20;DP=21;QA=600;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:1:30:20:600:-51.2926,-3.32206,0 +NC_000962.3 3389792 . G A 2017.8 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 3401871 . A G 1784.71 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3402816 . C T 2475.84 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 3404376 . C G 2639.47 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 3408150 . T C 2354.16 . AB=0;AO=90;DP=92;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:90:2700:-237.566,-21.9956,0 +NC_000962.3 3412611 . T C 2303.24 . AB=0;AO=91;DP=97;QA=2730;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:5:150:91:2730:-232.166,-15.4008,0 +NC_000962.3 3415180 . ACACCTAGGGGGTGG A 1840.73 . AB=0;AO=70;DP=73;QA=2100;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:70:2100:-186.273,-18.6735,0 +NC_000962.3 3420825 . A G 2292.17 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3423249 . C CGCGAGCAGACGCAGAATCGCCCAAAATCCAAGATTTTGAGGCGATTCTGCGTCTGCTCGCGCAACCGG 300.503 . AB=0;AO=12;DP=13;QA=360;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3425854 . C T 1387.14 . AB=0;AO=55;DP=59;QA=1650;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:3:90:55:1650:-140.38,-9.36091,0 +NC_000962.3 3428917 . C A 2889.28 . AB=0;AO=109;DP=111;QA=3270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:109:3270:-291.558,-30.4137,0 +NC_000962.3 3440464 . TGTGG GGTGC 1265.1 . AB=0;AO=48;DP=49;QA=1440;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 3446699 . C G 1983.15 . AB=0;AO=80;DP=87;QA=2400;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:6:180:80:2400:-199.771,-9.69092,0 +NC_000962.3 3450725 . T C 1631.5 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3453792 . G A 1745.68 . AB=0;AO=69;DP=75;QA=2070;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:4:120:69:2070:-175.475,-11.1768,0 +NC_000962.3 3454263 . C G 2240.5 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3455686 . G C 2325.21 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 3456666 . A G 1961.7 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3462135 . G C 1345.08 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.921,-15.3525,0 +NC_000962.3 3466919 . C G 2210.27 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 3467465 . C G 3014.7 . AB=0;AO=113;DP=113;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:113:3390:-305.356,-34.0164,0 +NC_000962.3 3473996 . G GA 2444.84 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3476350 . G A 1526.01 . AB=0;AO=59;DP=62;QA=1770;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:59:1770:-153.878,-12.9636,0 +NC_000962.3 3477942 . A G 4049.92 . AB=0;AO=154;DP=157;QA=4620;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:157:3:90:154:4620:-407.641,-38.8629,0 +NC_000962.3 3480474 . G A 3852.58 . AB=0;AO=144;DP=144;QA=4320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:144:0:0:144:4320:-389.044,-43.3483,0 +NC_000962.3 3480789 . T C 3960.95 . AB=0;AO=150;DP=152;QA=4500;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:152:2:60:150:4500:-399.542,-40.0574,0 +NC_000962.3 3482717 . A G 2269.27 . AB=0;AO=88;DP=90;QA=2640;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:2:60:88:2640:-232.166,-21.3935,0 +NC_000962.3 3485443 . C T 2984.54 . AB=0;AO=118;DP=127;QA=3540;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:7:210:118:3540:-299.657,-18.7315,0 +NC_000962.3 3485492 . A G 3081.96 . AB=0;AO=120;DP=126;QA=3600;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:126:5:150:120:3600:-310.455,-24.1307,0 +NC_000962.3 3486977 . A G 2066.63 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3487108 . C T 2028.38 . AB=0;AO=79;DP=83;QA=2370;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:3:90:79:2370:-205.17,-16.5856,0 +NC_000962.3 3491518 . G A 1426.57 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3492531 . C T 2349.76 . AB=0;AO=90;DP=93;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:2:60:90:2700:-237.566,-22.2955,0 +NC_000962.3 3498198 . C T 2380.46 . AB=0;AO=92;DP=96;QA=2760;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:3:90:92:2760:-240.265,-20.499,0 +NC_000962.3 3500149 . G A 1918.89 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.253,-19.2767,0 +NC_000962.3 3500243 . G C 1918.67 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 3503895 . C T 2394.01 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 3508970 . A G 1811.29 . AB=0;AO=73;DP=78;QA=2190;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:5:150:73:2190:-183.573,-9.68233,0 +NC_000962.3 3509626 . C A 2112.78 . AB=0;AO=85;DP=91;QA=2550;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:6:180:85:2550:-213.269,-10.8961,0 +NC_000962.3 3510120 . T G 2054.49 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 3518167 . A G 2077.22 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3518555 . A G 2229.47 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3529067 . G C 2406.41 . AB=0;AO=93;DP=95;QA=2790;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:93:2790:-245.664,-22.8987,0 +NC_000962.3 3530955 . C G 1916.3 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 3542049 . G A 2194.79 . AB=0;AO=87;DP=93;QA=2610;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:5:150:87:2610:-221.368,-14.1967,0 +NC_000962.3 3550347 . C T 3056.64 . AB=0;AO=115;DP=119;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:119:0:0:115:3450:-310.455,-34.6185,0 +NC_000962.3 3550787 . GCCGCCGTGGCA G 2046 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3556275 . A G 3205.21 . AB=0;AO=120;DP=120;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:120:3600:-324.253,-36.1236,0 +NC_000962.3 3560018 . G A 1700.14 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 3569220 . G A 1846.17 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3571828 . G C 1952.54 . AB=0;AO=76;DP=80;QA=2280;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:3:90:76:2280:-197.072,-15.6825,0 +NC_000962.3 3576231 . T C 1375.44 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 3577497 . C T 1865.74 . AB=0;AO=71;DP=74;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 3580636 . CT C 1605.82 . AB=0;AO=61;DP=66;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3581414 . A G 2395.28 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 3587446 . G A 2165.62 . AB=0;AO=84;DP=88;QA=2520;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:84:2520:-218.668,-18.0908,0 +NC_000962.3 3590686 . G GC 2795.16 . AB=0;AO=105;DP=109;QA=3150;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 3591063 . T C 2517.55 . AB=0;AO=95;DP=97;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 3597249 . C G 2359.2 . AB=0;AO=94;DP=100;QA=2820;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:6:180:94:2820:-237.566,-13.6054,0 +NC_000962.3 3600576 . C T 1679.16 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 3604821 . G C 1286.64 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3609388 . G A 1762.62 . AB=0;AO=69;DP=74;QA=2070;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:3:90:69:2070:-178.174,-13.5753,0 +NC_000962.3 3610391 . A AC 1937.1 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3612813 . T C 1863.07 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 3614982 . T C 2574.66 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 3621423 . A G 2234.32 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3622441 . A C 1898.98 . AB=0;AO=73;DP=75;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 3625065 . T G 2611.28 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3626562 . G A 2077.08 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 3628520 . G A 2023.56 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 3638093 . G A 2475.1 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 3643985 . A C 2764.01 . AB=0;AO=109;DP=117;QA=3270;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:6:180:109:3270:-278.06,-18.4208,0 +NC_000962.3 3653988 . G A 2100.7 . AB=0;AO=83;DP=88;QA=2490;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:4:120:83:2490:-213.269,-15.3912,0 +NC_000962.3 3664354 . C G 2170.07 . AB=0;AO=88;DP=95;QA=2640;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:7:210:88:2640:-218.668,-9.40063,0 +NC_000962.3 3664457 . C A 2061.64 . AB=0;AO=82;DP=87;QA=2460;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:5:150:82:2460:-207.87,-12.3916,0 +NC_000962.3 3667575 . G A 2104.39 . AB=0;AO=80;DP=84;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:80:2400:-213.269,-21.6838,0 +NC_000962.3 3670040 . C T 2397.26 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 3674157 . T A 1925.89 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 3678249 . A C 2187.17 . AB=0;AO=85;DP=88;QA=2550;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:85:2550:-221.368,-18.0919,0 +NC_000962.3 3680932 . G A 1748.81 . AB=0;AO=69;DP=72;QA=2070;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:3:90:69:2070:-178.174,-13.2754,0 +NC_000962.3 3681548 . A C 1752.25 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3689523 . G T 2087.54 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3690016 . A G 1675.68 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 3693681 . A C 2208.1 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3704596 . G C 2127.29 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3704770 . A G 2126.87 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 3710369 . TTGTTATGGACAC T 1750.17 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3714211 . G T 1644.22 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 3714757 . A C 1939.77 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 3718357 . C T 1528.5 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3721806 . G C 2130.3 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3730466 . A G 1513.89 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3730519 . C G 825.321 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 3730616 . G A 311.218 . AB=0;AO=13;DP=14;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:13:390:-35.0949,-3.91339,0 +NC_000962.3 3730642 . G A 328.531 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3732247 . C G 1639.94 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3732344 . G A 578.285 . AB=0;AO=24;DP=25;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:24:720:-64.7906,-7.22472,0 +NC_000962.3 3732517 . A G 476.826 . AB=0;AO=20;DP=22;QA=600;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:20:600:-51.2926,-3.62202,0 +NC_000962.3 3732525 . A T 501.491 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 3732553 . A G 591.736 . AB=0;AO=24;DP=25;QA=720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:1:30:24:720:-62.091,-4.52618,0 +NC_000962.3 3732624 . A G 847.166 . AB=0;AO=34;DP=37;QA=1020;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:2:60:34:1020:-86.3875,-5.43786,0 +NC_000962.3 3735802 . C G 1494.32 . AB=0;AO=58;DP=60;QA=1740;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:2:60:58:1740:-151.178,-12.3626,0 +NC_000962.3 3736024 . A G 513.338 . AB=0;AO=21;DP=23;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:1:30:21:630:-53.9922,-3.92305,0 +NC_000962.3 3736628 . T G 1155.51 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 3737466 . AGCCGCTGCCGCCGGCGCCGCCGGCGCCGCCGCCACC A 328.531 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3738416 . TG T 297.651 . AB=0;AO=12;DP=13;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3743656 . G A 2163.98 . AB=0;AO=83;DP=85;QA=2490;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:2:60:83:2490:-218.668,-19.8884,0 +NC_000962.3 3743899 . G A 1731.75 . AB=0;AO=68;DP=71;QA=2040;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:3:90:68:2040:-175.475,-12.9743,0 +NC_000962.3 3746409 . A G 1746.76 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3750177 . AA TC 2274.31 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3750185 . CGAC GGTG 2143.07 . AB=0;AO=81;DP=87;QA=2430;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 3750193 . G A 2310.4 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3750205 . CGACAT TGACGG 2300.41 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3750407 . G C 1724.3 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3750417 . AAGCT TAGCC 1753.03 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3752207 . A G 1725.88 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3753116 . C T 1330.66 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3753164 . T G 1434.8 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 3754508 . G C 2186.51 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 3761016 . GC G 1308.78 . AB=0;AO=51;DP=58;QA=1530;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:2:60:51:1530:-132.281,-10.5554,0 +NC_000962.3 3762013 . A C 1862.51 . AB=0;AO=74;DP=78;QA=2220;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:4:120:74:2220:-188.973,-12.3819,0 +NC_000962.3 3775409 . T C 1004.71 . AB=0;AO=41;DP=42;QA=1230;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:1:30:41:1230:-107.984,-9.64369,0 +NC_000962.3 3775441 . A C 1050.68 . AB=0;AO=41;DP=42;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 3778011 . GG AT 1773.9 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 3778396 . C T 2459.88 . AB=0;AO=96;DP=102;QA=2880;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:4:120:96:2880:-248.364,-19.3046,0 +NC_000962.3 3779671 . C CGGCAACGGT 450.417 . AB=0;AO=18;DP=25;QA=540;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 3785898 . G A 2583.89 . AB=0;AO=101;DP=106;QA=3030;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:4:120:101:3030:-261.862,-20.8097,0 +NC_000962.3 3789559 . G A 2691.09 . AB=0;AO=106;DP=112;QA=3180;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:6:180:106:3180:-269.961,-17.2177,0 +NC_000962.3 3790852 . T C 2923.96 . AB=0;AO=118;DP=127;QA=3540;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:9:270:118:3540:-294.257,-13.6344,0 +NC_000962.3 3794867 . C CCA 1792.82 . AB=0;AO=69;DP=72;QA=2070;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 3798095 . A C 1730.67 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3798596 . A G 2968.35 . AB=0;AO=112;DP=115;QA=3360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:1:30:112:3360:-299.657,-31.3168,0 +NC_000962.3 3800959 . T G 2121.47 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3802140 . ACGGCGGGGCCGGCGGCGG A 255.361 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3805252 . G A 2155.75 . AB=0;AO=88;DP=97;QA=2640;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:7:210:88:2640:-218.668,-9.70058,0 +NC_000962.3 3811672 . GTAA TTAG 2051.25 . AB=0;AO=81;DP=86;QA=2430;QR=120;RO=4;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:86:4:120:81:2430:-207.9,-14.7624,0 +NC_000962.3 3814514 . T C 1906.98 . AB=0;AO=77;DP=81;QA=2310;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:4:120:77:2310:-197.072,-13.285,0 +NC_000962.3 3815477 . G T 2638.42 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 3817117 . C A 2386.96 . AB=0;AO=91;DP=94;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:91:2730:-240.265,-22.5966,0 +NC_000962.3 3821845 . G T 2256.89 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 3823159 . A T 1645.08 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3826684 . C T 2100.95 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3829770 . T C 1926.23 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3830349 . C T 1068.97 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 3830695 . A G 1536.81 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3838871 . A G 2177.33 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3842463 . TA T 2929.34 . AB=0;AO=110;DP=114;QA=3300;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:110:3300:-296.928,-33.1133,0 +NC_000962.3 3842620 . A G 2936.71 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 3842625 . A G 2935.61 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 3843407 . CG C 3717.05 . AB=0;AO=139;DP=145;QA=4170;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:145:0:0:139:4170:-375.246,-41.8432,0 +NC_000962.3 3844756 . GC G 341.91 . AB=0;AO=16;DP=17;QA=480;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:16:480:-43.1441,-4.81648,0 +NC_000962.3 3844992 . T A 2178.16 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3845695 . C T 2043.18 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3846791 . A G 439.499 . AB=0;AO=18;DP=19;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 3847215 . T C 2296.44 . AB=0;AO=91;DP=97;QA=2730;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:5:150:91:2730:-232.166,-15.4008,0 +NC_000962.3 3847221 . T C 2354.48 . AB=0;AO=93;DP=98;QA=2790;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:5:150:93:2790:-237.566,-15.7029,0 +NC_000962.3 3847235 . CTGC TTTT 2356.62 . AB=0;AO=93;DP=99;QA=2790;QR=150;RO=5;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:99:5:150:93:2790:-237.566,-16.0029,0 +NC_000962.3 3851887 . AT CC 1103.97 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 3859893 . C T 1793.36 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3862472 . GA G 1636.21 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3862931 . G A 1942.15 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 3864995 . T C 2258.18 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3865243 . G T 1463.68 . AB=0;AO=56;DP=58;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 3870010 . A G 1575.72 . AB=0;AO=65;DP=72;QA=1950;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:6:180:65:1950:-159.277,-5.17547,0 +NC_000962.3 3871246 . T C 1292.06 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3874722 . AT A 2369.88 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3877421 . A G 3037.9 . AB=0;AO=114;DP=117;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:0:0:114:3420:-307.756,-34.3174,0 +NC_000962.3 3880239 . C CGTCCGGCTCCTCCTCGGACCACTACGCGGCCCGCATCGTCGCCGACCAAATCCAACT 322.689 . AB=0;AO=14;DP=20;QA=420;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:20:1:30:14:420:-35.0949,-1.81584,0 +NC_000962.3 3883178 . A C 3368.47 . AB=0;AO=127;DP=128;QA=3810;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:128:1:30:127:3810:-340.151,-35.5323,0 +NC_000962.3 3884906 . A G 1448.9 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3885886 . T C 2181.53 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3892671 . A G 2667.91 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3893480 . G A 1446.83 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3894732 . A G 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3895585 . C T 2489.27 . AB=0;AO=96;DP=101;QA=2880;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:3:90:96:2880:-251.064,-21.7031,0 +NC_000962.3 3895727 . C A 2719.19 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 3895922 . G A 2189.42 . AB=0;AO=83;DP=86;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 3896340 . T G 1906.19 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3898408 . A G 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3901234 . A G 1783.24 . AB=0;AO=73;DP=79;QA=2190;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:6:180:73:2190:-180.874,-7.28375,0 +NC_000962.3 3902318 . A AT 1898.85 . AB=0;AO=78;DP=89;QA=2340;QR=210;RO=7;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:89:7:210:78:2340:-191.672,-6.69028,0 +NC_000962.3 3906311 . G A 1355.68 . AB=0;AO=56;DP=61;QA=1680;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:5:150:56:1680:-137.68,-4.56482,0 +NC_000962.3 3906746 . CG C 2066.7 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 3909235 . G C 1695.52 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3934542 . T G 380 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 3934699 . G A 250.029 . AB=0;AO=12;DP=13;QA=360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:1:30:12:360:-29.6957,-0.913824,0 +NC_000962.3 3940802 . A G 333.583 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3942481 . C G 913.61 . AB=0;AO=35;DP=38;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 3942640 . T C 891.232 . AB=0;AO=35;DP=36;QA=1050;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:1:30:35:1050:-91.7867,-7.83751,0 +NC_000962.3 3943019 . C G 389.305 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 3943744 . CCGGCAACGG C 620.775 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 3952308 . C A 1792.63 . AB=0;AO=71;DP=75;QA=2130;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:4:120:71:2130:-180.874,-11.4789,0 +NC_000962.3 3952800 . G A 2340.58 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 3958403 . A G 2667.74 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3959418 . C T 2153.4 . AB=0;AO=82;DP=85;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 3962187 . G A 2251.64 . AB=0;AO=86;DP=88;QA=2580;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:2:60:86:2580:-226.767,-20.7915,0 +NC_000962.3 3964518 . G A 2731.74 . AB=0;AO=107;DP=112;QA=3210;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:5:150:107:3210:-275.36,-19.9174,0 +NC_000962.3 3970594 . C G 2108.26 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 3976595 . G T 1947.45 . AB=0;AO=74;DP=76;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:74:2220:-197.072,-19.8776,0 +NC_000962.3 3979990 . C G 2036.9 . AB=0;AO=83;DP=92;QA=2490;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:7:210:83:2490:-205.17,-8.19543,0 +NC_000962.3 3981983 . G A 2007.86 . AB=0;AO=79;DP=83;QA=2370;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:4:120:79:2370:-202.471,-13.8871,0 +NC_000962.3 3984321 . G A 2832.46 . AB=0;AO=107;DP=108;QA=3210;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:1:30:107:3210:-286.159,-29.5117,0 +NC_000962.3 3987370 . CG C 2073.95 . AB=0;AO=81;DP=86;QA=2430;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:3:90:81:2430:-210.56,-17.1977,0 +NC_000962.3 3993058 . G A 2281.89 . AB=0;AO=90;DP=95;QA=2700;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:5:150:90:2700:-229.467,-14.7998,0 +NC_000962.3 3997418 . G C 2163.57 . AB=0;AO=83;DP=86;QA=2490;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:2:60:83:2490:-218.668,-20.1883,0 +NC_000962.3 4001622 . T C 1382.97 . AB=0;AO=58;DP=64;QA=1740;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:6:180:58:1740:-140.38,-2.7683,0 +NC_000962.3 4005114 . G C 1693.42 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4005607 . T C 1829.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4008747 . A G 1990.76 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 4022388 . G A 2035.12 . AB=0;AO=79;DP=82;QA=2370;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:3:90:79:2370:-205.17,-16.2857,0 +NC_000962.3 4023644 . T C 1681.19 . AB=0;AO=65;DP=69;QA=1950;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 4024273 . T C 2261.86 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 4024755 . G A 1412.85 . AB=0;AO=59;DP=65;QA=1770;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:6:180:59:1770:-143.079,-3.06933,0 +NC_000962.3 4026899 . G A 1656.69 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4028616 . C A 2457.86 . AB=0;AO=99;DP=106;QA=2970;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:7:210:99:2970:-248.364,-12.712,0 +NC_000962.3 4028752 . A G 3075.63 . AB=0;AO=116;DP=117;QA=3480;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:1:30:116:3480:-310.455,-32.2209,0 +NC_000962.3 4032218 . G A 816.002 . AB=0;AO=35;DP=40;QA=1050;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:4:120:35:1050:-83.6879,-0.941731,0 +NC_000962.3 4032625 . G T 345.85 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 4034827 . C T 2421.56 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 4037283 . T G 562.627 . AB=0;AO=22;DP=25;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 4041581 . C T 2785.68 . AB=0;AO=109;DP=115;QA=3270;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:5:150:109:3270:-280.759,-20.8194,0 +NC_000962.3 4050811 . G A 1789.76 . AB=0;AO=69;DP=73;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 4053050 . A G 585.529 . AB=0;AO=25;DP=26;QA=750;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:1:30:25:750:-64.7906,-4.82721,0 +NC_000962.3 4055426 . G C 1873.35 . AB=0;AO=76;DP=82;QA=2280;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:6:180:76:2280:-188.973,-8.18684,0 +NC_000962.3 4055801 . G A 2199.9 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4056416 . C A 3480.59 . AB=0;AO=131;DP=134;QA=3930;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:134:1:30:131:3930:-350.949,-37.0364,0 +NC_000962.3 4056693 . G T 3290.54 . AB=0;AO=126;DP=129;QA=3780;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:129:3:90:126:3780:-332.052,-30.4341,0 +NC_000962.3 4059143 . A C 2252.77 . AB=0;AO=88;DP=93;QA=2640;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:4:120:88:2640:-226.767,-16.8963,0 +NC_000962.3 4059904 . A G 2872.9 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 4060100 . G A 1691.42 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4060201 . G A 642.811 . AB=0;AO=28;DP=28;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:28:840:-75.889,-8.42884,0 +NC_000962.3 4060210 . T A 492.691 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 4060230 . G A 454.071 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 4060588 . T C 1950.26 . AB=0;AO=76;DP=79;QA=2280;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:3:90:76:2280:-197.072,-15.3826,0 +NC_000962.3 4069292 . G A 1675.14 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 4089058 . T C 1832.08 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4095001 . CG C 1336.19 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4095295 . T C 1856.98 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 4096857 . G A 1244.64 . AB=0;AO=49;DP=53;QA=1470;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:2:60:49:1470:-126.882,-9.95331,0 +NC_000962.3 4100975 . T C 2094.11 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4107074 . T C 2287.97 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4107517 . G A 1962.62 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4110007 . C A 1832.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4111303 . G C 1906.19 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4112429 . T C 2502.47 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4115890 . G C 2162.24 . AB=0;AO=82;DP=84;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 4116610 . G A 2679.17 . AB=0;AO=106;DP=112;QA=3180;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:6:180:106:3180:-269.961,-17.2177,0 +NC_000962.3 4120390 . G C 1915.32 . AB=0;AO=74;DP=77;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:2:60:74:2220:-194.372,-17.4791,0 +NC_000962.3 4120983 . A G 963.561 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 4121495 . T C 3024.78 . AB=0;AO=116;DP=121;QA=3480;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:3:90:116:3480:-305.056,-27.7237,0 +NC_000962.3 4122287 . G T 2167.23 . AB=0;AO=89;DP=98;QA=2670;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:8:240:89:2670:-218.668,-7.60303,0 +NC_000962.3 4123770 . G A 1506.61 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4124349 . GCC G 2109.49 . AB=0;AO=82;DP=89;QA=2460;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:3:90:82:2460:-213.269,-17.4887,0 +NC_000962.3 4133316 . A T 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4137829 . C T 2175.66 . AB=0;AO=89;DP=98;QA=2670;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:8:240:89:2670:-218.668,-7.60303,0 +NC_000962.3 4145737 . A G 1588.53 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4151855 . A G 2427.21 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 4156099 . C A 2453.79 . AB=0;AO=93;DP=97;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:93:2790:-248.364,-25.5972,0 +NC_000962.3 4156503 . C T 1802.47 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 4156686 . C T 787.815 . AB=0;AO=32;DP=33;QA=960;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:1:30:32:960:-83.6879,-6.93442,0 +NC_000962.3 4158493 . C T 1496.42 . AB=0;AO=60;DP=64;QA=1800;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:4:120:60:1800:-151.178,-8.16752,0 +NC_000962.3 4159195 . T C 2182.37 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4160371 . C A 2676.71 . AB=0;AO=104;DP=108;QA=3120;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:4:120:104:3120:-269.961,-21.4128,0 +NC_000962.3 4162339 . A G 2334.7 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 4166441 . G A 1811.36 . AB=0;AO=69;DP=72;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 4167656 . A G 2167.8 . AB=0;AO=89;DP=98;QA=2670;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:8:240:89:2670:-218.668,-7.60303,0 +NC_000962.3 4169852 . G T 1815.98 . AB=0;AO=71;DP=74;QA=2130;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:3:90:71:2130:-183.573,-13.8774,0 +NC_000962.3 4170739 . G C 2252.47 . AB=0;AO=90;DP=96;QA=2700;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:6:180:90:2700:-226.767,-12.4013,0 +NC_000962.3 4170964 . G GA 2232.35 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4174131 . G C 3052.88 . AB=0;AO=116;DP=118;QA=3480;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:118:2:60:116:3480:-307.756,-29.8224,0 +NC_000962.3 4179089 . C T 2559.58 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 4179832 . G C 1843.47 . AB=0;AO=72;DP=75;QA=2160;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:3:90:72:2160:-186.273,-14.1785,0 +NC_000962.3 4182387 . G C 2102.86 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4182695 . G A 2547.29 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 4185408 . G A 2439.03 . AB=0;AO=98;DP=106;QA=2940;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:7:210:98:2940:-245.664,-12.7109,0 +NC_000962.3 4186678 . G A 2127.52 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 4187485 . T C 2392.6 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 4187817 . A G 2097.68 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4189210 . G T 1714.39 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 4194501 . G A 1678.95 . AB=0;AO=65;DP=68;QA=1950;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 4196637 . G A 2516.47 . AB=0;AO=100;DP=108;QA=3000;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:6:180:100:3000:-253.763,-15.7115,0 +NC_000962.3 4197138 . C CT 1909.77 . AB=0;AO=72;DP=76;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4198611 . CG C 300.503 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 4204441 . A G 3715.31 . AB=0;AO=139;DP=140;QA=4170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:140:0:0:139:4170:-375.246,-41.8432,0 +NC_000962.3 4205120 . A G 2204.88 . AB=0;AO=84;DP=87;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 4205325 . A G 2113.26 . AB=0;AO=82;DP=85;QA=2460;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:3:90:82:2460:-213.269,-17.1888,0 +NC_000962.3 4210274 . A G 2177.69 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 4212832 . GACC G 2512.21 . AB=0;AO=98;DP=104;QA=2940;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:104:4:120:98:2940:-253.763,-19.9066,0 +NC_000962.3 4215484 . G C 1721.66 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 4217557 . A G 2363.18 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 4218416 . C A 1711.49 . AB=0;AO=69;DP=74;QA=2070;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:5:150:69:2070:-172.775,-8.47821,0 +NC_000962.3 4218941 . G A 1778.26 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 4221070 . AC A 2170.99 . AB=0;AO=85;DP=90;QA=2550;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:90:4:120:85:2550:-218.668,-15.9932,0 +NC_000962.3 4221423 . C T 1962.42 . AB=0;AO=82;DP=93;QA=2460;QR=270;RO=9;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:9:270:82:2460:-197.072,-3.09724,0 +NC_000962.3 4221490 . C G 1969.81 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 4222073 . A G 2339.25 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 4222882 . A G 1995.6 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4223172 . T C 1522.39 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 4229167 . T C 2167.98 . AB=0;AO=87;DP=94;QA=2610;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:6:180:87:2610:-218.668,-11.7981,0 +NC_000962.3 4231859 . CGCGGTCTGTGCGCCGGGCGCACGCACCGAATTCGAGCTATTAGCGGCCGCGGCAAGGGACGCATTCGGCCTGGACGTCCACCCAGCGGT C 652.941 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 4234960 . A C 2141.07 . AB=0;AO=84;DP=89;QA=2520;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:4:120:84:2520:-215.969,-15.6922,0 +NC_000962.3 4236237 . C T 2355.4 . AB=0;AO=92;DP=97;QA=2760;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:4:120:92:2760:-237.566,-18.1004,0 +NC_000962.3 4242643 . C T 2285.74 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4243460 . C T 2165.43 . AB=0;AO=83;DP=85;QA=2490;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:2:60:83:2490:-218.668,-19.8884,0 +NC_000962.3 4251297 . G C 1956.98 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4252066 . T C 2032.39 . AB=0;AO=80;DP=84;QA=2400;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:4:120:80:2400:-205.17,-14.1881,0 +NC_000962.3 4254290 . T G 1903.72 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 4254431 . G A 2672.3 . AB=0;AO=101;DP=102;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:101:3030:-269.961,-27.7055,0 +NC_000962.3 4255922 . A G 2233.71 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4256210 . G T 2145.33 . AB=0;AO=84;DP=88;QA=2520;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:4:120:84:2520:-215.969,-15.3922,0 +NC_000962.3 4257220 . A G 2745.68 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 4262388 . C T 2301.17 . AB=0;AO=91;DP=97;QA=2730;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:5:150:91:2730:-232.166,-15.4008,0 +NC_000962.3 4264381 . G GC 1837.03 . AB=0;AO=71;DP=76;QA=2130;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:71:2130:-186.262,-16.584,0 +NC_000962.3 4267647 . T C 2077.54 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 4280708 . G A 1734.64 . AB=0;AO=69;DP=73;QA=2070;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:4:120:69:2070:-175.475,-10.8768,0 +NC_000962.3 4284429 . G A 2381.69 . AB=0;AO=92;DP=95;QA=2760;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:3:90:92:2760:-240.265,-20.1991,0 +NC_000962.3 4287164 . A G 2333.52 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 4290135 . C T 2676.39 . AB=0;AO=106;DP=112;QA=3180;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:6:180:106:3180:-269.961,-17.2177,0 +NC_000962.3 4296015 . G A 2503.38 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4296225 . G A 1860.96 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4301075 . G C 2501.19 . AB=0;AO=97;DP=100;QA=2910;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:3:90:97:2910:-253.763,-21.7042,0 +NC_000962.3 4302036 . T C 2010.72 . AB=0;AO=76;DP=80;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4303498 . T TG 1960.05 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4305063 . G GA 2403.45 . AB=0;AO=92;DP=98;QA=2760;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:98:2:60:92:2760:-242.965,-22.8976,0 +NC_000962.3 4306155 . C T 2449.9 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 4306427 . C T 1984.08 . AB=0;AO=81;DP=88;QA=2430;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:7:210:81:2430:-199.771,-7.29342,0 +NC_000962.3 4307179 . G A 2524.56 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 4308395 . G A 2343.87 . AB=0;AO=91;DP=95;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:3:90:91:2730:-237.566,-20.198,0 +NC_000962.3 4311664 . C T 1973.94 . AB=0;AO=75;DP=77;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 4313128 . C T 2556.23 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 4314645 . A G 3066.7 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 4314787 . C A 2368.75 . AB=0;AO=91;DP=94;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:91:2730:-240.265,-22.5966,0 +NC_000962.3 4314800 . G A 2394.38 . AB=0;AO=92;DP=95;QA=2760;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:2:60:92:2760:-242.965,-22.8976,0 +NC_000962.3 4319985 . G C 1282.57 . AB=0;AO=54;DP=60;QA=1620;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:6:180:54:1620:-129.581,-1.56418,0 +NC_000962.3 4322039 . AC A 2459.55 . AB=0;AO=95;DP=101;QA=2850;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:101:3:90:95:2850:-248.345,-21.4222,0 +NC_000962.3 4323300 . C A 2164.71 . AB=0;AO=85;DP=89;QA=2550;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:4:120:85:2550:-218.668,-15.6933,0 +NC_000962.3 4326676 . G C 2422.9 . AB=0;AO=96;DP=103;QA=2880;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:6:180:96:2880:-242.965,-14.5074,0 +NC_000962.3 4329782 . G A 2935.59 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 4338595 . GC G 2258.17 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4338732 . G A 2723.36 . AB=0;AO=103;DP=104;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:103:3090:-275.36,-28.3076,0 +NC_000962.3 4340028 . G C 2486.08 . AB=0;AO=97;DP=101;QA=2910;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:4:120:97:2910:-251.064,-19.3056,0 +NC_000962.3 4349717 . T C 2081.26 . AB=0;AO=80;DP=82;QA=2400;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:80:2400:-210.57,-18.9853,0 +NC_000962.3 4350305 . G A 2001.83 . AB=0;AO=79;DP=84;QA=2370;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:4:120:79:2370:-202.471,-14.1871,0 +NC_000962.3 4351039 . G T 2531.6 . AB=0;AO=96;DP=98;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:96:2880:-256.463,-26.5003,0 +NC_000962.3 4356110 . G C 2575.61 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 4357597 . C G 2155.24 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 4357804 . T G 1908.46 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4359135 . T TGGGGTTCCCGGGGTGATCGGGGTTCCCGGCGTGATC 443.79 . AB=0;AO=19;DP=23;QA=570;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:23:2:60:19:570:-45.8934,-0.922411,0 +NC_000962.3 4359165 . G C 863.247 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 4359653 . C T 2618.57 . AB=0;AO=102;DP=106;QA=3060;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:4:120:102:3060:-264.562,-20.8108,0 +NC_000962.3 4359828 . G A 2520.21 . AB=0;AO=97;DP=101;QA=2910;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:3:90:97:2910:-253.763,-22.0042,0 +NC_000962.3 4362568 . T G 2280.06 . AB=0;AO=90;DP=98;QA=2700;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:5:150:90:2700:-229.467,-15.0998,0 +NC_000962.3 4366195 . T C 2505.04 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4366272 . G C 2176.27 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4368084 . G C 2457.15 . AB=0;AO=94;DP=96;QA=2820;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:2:60:94:2820:-248.364,-23.1997,0 +NC_000962.3 4372353 . G C 2288.56 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4375628 . G T 2561.2 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 4378504 . T C 3437.76 . AB=0;AO=130;DP=132;QA=3900;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:132:2:60:130:3900:-345.55,-34.0368,0 +NC_000962.3 4379044 . CG C 1078.23 . AB=0;AO=41;DP=44;QA=1230;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 4379680 . C G 2554.17 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 4382054 . T C 1837.66 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 4382275 . G T 2450.65 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4383144 . C CCGGGG 1452.14 . AB=0;AO=55;DP=58;QA=1650;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 4383655 . A G 2075.9 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 4384007 . C G 2685.26 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 4386228 . T C 2610.42 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 4393178 . A G 2237.8 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4393590 . C G 1853.69 . AB=0;AO=73;DP=78;QA=2190;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:3:90:73:2190:-188.973,-14.7795,0 +NC_000962.3 4397736 . C T 2135.5 . AB=0;AO=84;DP=90;QA=2520;QR=120;RO=4;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:4:120:84:2520:-215.969,-15.6922,0 +NC_000962.3 4398687 . G T 1765.19 . AB=0;AO=71;DP=76;QA=2130;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:5:150:71:2130:-178.174,-9.08027,0 +NC_000962.3 4400660 . AC A 765.196 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 4407588 . T C 2234.4 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4407927 . T G 2021.19 . AB=0;AO=78;DP=80;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:78:2340:-205.17,-18.3832,0 +NC_000962.3 4408923 . C T 2612.17 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 diff --git a/.github/data/variants/DRR261179.vcf b/.github/data/variants/DRR261179.vcf new file mode 100644 index 0000000..5b37d52 --- /dev/null +++ b/.github/data/variants/DRR261179.vcf @@ -0,0 +1,2196 @@ +##fileformat=VCFv4.2 +##FILTER= +##fileDate=20240221 +##source=freeBayes v1.3.6 +##reference=reference/ref.fa +##contig= +##phasing=none +##commandline="freebayes -p 2 -P 0 -C 2 -F 0.05 --min-coverage 10 --min-repeat-entropy 1.0 -q 13 -m 60 --strict-vcf -f reference/ref.fa DRR261179.bam --region NC_000962.3:0-299008" +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##bcftools_viewVersion=1.15.1+htslib-1.16 +##bcftools_viewCommand=view --include 'FMT/GT="1/1" && QUAL>=100 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0' DRR261179.raw.vcf; Date=Wed Feb 21 16:22:37 2024 +##bcftools_annotateVersion=1.15.1+htslib-1.16 +##bcftools_annotateCommand=annotate --remove ^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL; Date=Wed Feb 21 16:22:37 2024 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DRR261179 +NC_000962.3 1815 . T TG 2027.59 . AB=0;AO=77;DP=82;QA=2310;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:77:2310:-205.17,-20.7807,0 +NC_000962.3 1977 . A G 2121.05 . AB=0;AO=80;DP=82;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 2532 . T C 1206.27 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 4013 . T C 2256.59 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 6112 . G C 1964.46 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 6544 . C T 1833.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 7362 . G C 1965.62 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 7585 . G C 1748.73 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 8452 . C T 1941.52 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 9143 . T C 1912.77 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 9304 . G A 1435.73 . AB=0;AO=55;DP=58;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 10986 . G A 2207.38 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 11879 . A G 1184.94 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 13100 . C T 2042.03 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 13275 . T C 2226.98 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 13298 . G C 2182.37 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 13460 . A G 2127.08 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 13482 . G A 2043.54 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 14401 . A G 1578.49 . AB=0;AO=61;DP=64;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 14785 . T C 2307.8 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 15117 . C G 2622.29 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 15787 . C G 1561.45 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 15900 . G A 1959.84 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 21795 . G A 1007.43 . AB=0;AO=40;DP=42;QA=1200;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:2:60:40:1200:-102.585,-6.94408,0 +NC_000962.3 21819 . A C 964.261 . AB=0;AO=37;DP=42;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 22961 . T G 1129.81 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 23174 . C A 1343.48 . AB=0;AO=52;DP=54;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 24698 . GCCGCGTTGCTCGGGGTAA G 1050.91 . AB=0;AO=41;DP=42;QA=1230;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:1:30:41:1230:-107.926,-9.64369,0 +NC_000962.3 26347 . C G 1116.33 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 26959 . C G 1669.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 27469 . A G 1178.13 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 27996 . T C 1457.32 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 30980 . C CCGAT 1800.14 . AB=0;AO=70;DP=75;QA=2100;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:75:3:90:70:2100:-180.874,-13.8764,0 +NC_000962.3 31552 . C T 1968.18 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 33267 . G A 2209.35 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 34044 . T C 2376.24 . AB=0;AO=90;DP=93;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 36538 . T C 1237.77 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 37031 . C G 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 38332 . G T 1573.03 . AB=0;AO=61;DP=64;QA=1830;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:2:60:61:1830:-159.277,-13.5657,0 +NC_000962.3 39758 . A G 1338.21 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 42281 . C A 1048.53 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 42520 . C T 1505.43 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 42967 . G C 1834.32 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 43945 . A G 1692.03 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 50557 . T C 1904.96 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 51949 . A G 1804.75 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 54394 . A G 2098.94 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 55069 . G C 2607.06 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 55549 . GCCGC TCCGCCGCCGCCGT 996.622 . AB=0;AO=38;DP=48;QA=1140;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:38:1140:-102.58,-11.4391,0 +NC_000962.3 62049 . A G 1641.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 64028 . C T 1941.52 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 65159 . G A 1103.97 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 65663 . C G 1671.9 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 66892 . C G 1308.51 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 67735 . C T 1318.66 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 68174 . T C 1751.21 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 68605 . A G 1911.82 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 69989 . G A 1614.08 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 70267 . G T 1669.58 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 70816 . A G 1913.73 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 71203 . C T 1460 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 71336 . G C 805.473 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 71584 . C CCGAGCGCTGTTCTGGCGCTAATCTGACGCTAGAATAG 791.662 . AB=0;AO=31;DP=34;QA=930;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:34:1:30:31:930:-80.9883,-6.93335,0 +NC_000962.3 74737 . T G 1669.21 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 75940 . G C 1366.09 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 79281 . C CCCACAT 1161.08 . AB=0;AO=45;DP=46;QA=1350;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:1:30:45:1350:-118.724,-10.8478,0 +NC_000962.3 79479 . T C 1391.55 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 79504 . T TCGGTGGACCCGGTGGACC 1010.19 . AB=0;AO=39;DP=45;QA=1170;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:39:1170:-105.276,-11.7402,0 +NC_000962.3 80616 . C G 1489.26 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 82843 . TC T 1525.2 . AB=0;AO=58;DP=60;QA=1740;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 82897 . C T 1919.14 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 84528 . T G 2093.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 89200 . G T 1544.72 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 89871 . C T 1479.75 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 92199 . T G 1401.58 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 97696 . T C 2130.51 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 98966 . G C 1966.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 101179 . G A 1741.68 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 102650 . A C 1376.41 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 103600 . A G 1397.04 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 103823 . GGCCGTG CGCCTTT 602.373 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 103836 . GTTGT TTTGC 535.084 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 103846 . G A 562.125 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 103893 . CAGC GAGG 301.237 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 104712 . C T 1371.12 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 104824 . C A 2155.02 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 105045 . G C 2071.14 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 114876 . C T 1588.78 . AB=0;AO=61;DP=64;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 115499 . T G 1591.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 116000 . T G 1618.76 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 117295 . G A 1988.01 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 120522 . C T 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 122109 . A G 1673.13 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 122616 . GT G 1517.67 . AB=0;AO=59;DP=64;QA=1770;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:2:60:59:1770:-153.878,-12.9636,0 +NC_000962.3 123520 . T C 2474.21 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 123740 . TG T 1658.63 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 125830 . G GA 1717.59 . AB=0;AO=65;DP=70;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 126803 . A G 1776.73 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 131174 . T TG 1209.23 . AB=0;AO=46;DP=48;QA=1380;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 132417 . C G 300.65 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 132646 . G T 304.841 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 133813 . G A 1667.67 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 133839 . C T 1591.1 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 137233 . C T 2340.97 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 139556 . A AC 1668.92 . AB=0;AO=64;DP=67;QA=1920;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 139756 . T C 1485.7 . AB=0;AO=57;DP=59;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 139954 . A C 2603.36 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 140857 . C T 947.072 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 143207 . T C 1426.75 . AB=0;AO=54;DP=58;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 144564 . C T 1194.24 . AB=0;AO=46;DP=47;QA=1380;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:1:30:46:1380:-121.482,-11.1488,0 +NC_000962.3 146087 . T C 1887.18 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 146788 . G A 1867.45 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 146872 . C T 1979.95 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 148145 . C G 1427.21 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 154191 . A G 866.326 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 154283 . T C 909.669 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 160976 . C G 1057.63 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 162226 . G A 1537.7 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 167986 . C T 1479.81 . AB=0;AO=56;DP=58;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 168787 . C T 1181.19 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 169309 . A AGTAGCCTAC 1449.95 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 170642 . T G 1121.18 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 171129 . G A 1377.4 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 176222 . G A 1291.72 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 177150 . G C 2046.44 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 177857 . G A 1646.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 186940 . C T 1937.98 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 188800 . T C 1421.65 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 189948 . C G 1237.39 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 190207 . C G 2004.85 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 190646 . G T 2074.14 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 192924 . C A 1266.32 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 194305 . C CGG 1759.96 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 194681 . G C 1448.53 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 195360 . T C 1466.1 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 196255 . CG C 1986.15 . AB=0;AO=75;DP=79;QA=2250;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 196353 . C T 2343.32 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 196642 . C T 1989.61 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 196874 . C T 1914.92 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 199470 . T G 2039.36 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 206339 . T C 1119.1 . AB=0;AO=44;DP=45;QA=1320;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:44:1320:-116.083,-10.5468,0 +NC_000962.3 206481 . CGGG GGGT 744.53 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.2887,-8.72987,0 +NC_000962.3 208316 . AT A 1625.63 . AB=0;AO=62;DP=65;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 208322 . T CG 1653.96 . AB=0;AO=63;DP=65;QA=1890;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 211993 . C A 1938.92 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 215238 . C T 1215.2 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 217201 . T C 1734.18 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 223747 . C CG 1504.22 . AB=0;AO=57;DP=67;QA=1710;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 223942 . T C 1233.75 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 225323 . T C 887.614 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 225668 . C T 1905.81 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 226676 . G A 1965.62 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 226929 . C T 1616.6 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 227098 . T C 1698.25 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 230576 . G GT 1526.64 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 231114 . C G 2099.58 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 233358 . A C 2073.78 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 233364 . G C 2047.43 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 234477 . T G 1800.97 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 234496 . C CGT 1802.73 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 243598 . A G 1404.16 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 244490 . G A 1327.75 . AB=0;AO=51;DP=53;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:51:1530:-134.98,-12.954,0 +NC_000962.3 244550 . A G 1079.98 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 249522 . T C 996.67 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 250952 . G A 1247.12 . AB=0;AO=48;DP=50;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 251575 . G A 2205.73 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 251669 . T C 2232.35 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 254903 . C A 2178.61 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 257788 . G GAGGATCATCAAGGGTGCGTCGCGGAAGTA 1208.47 . AB=0;AO=46;DP=49;QA=1380;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 259689 . G A 1807 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 260282 . G T 1646.74 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 261869 . T C 1222.59 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 263149 . A C 2068.17 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 264298 . C A 1299.39 . AB=0;AO=51;DP=53;QA=1530;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:2:60:51:1530:-132.281,-10.2554,0 +NC_000962.3 264984 . C G 2082.33 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 265170 . CG C 2147.82 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.61,-24.3834,0 +NC_000962.3 265554 . A C 1964.72 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 267265 . A G 2189.62 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 272678 . C T 1429.11 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 278189 . T C 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 278681 . C G 2048.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 281208 . C T 1831.07 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 283614 . T C 864.262 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 285772 . A C 1185.32 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 285871 . A G 1394.43 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 289300 . C T 1804 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 290374 . T C 990.757 . AB=0;AO=38;DP=39;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 293628 . A AC 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 304923 . A G 1001.01 . AB=0;AO=38;DP=38;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:38:1140:-102.885,-11.4391,0 +NC_000962.3 308121 . C T 1102.35 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 308312 . G A 616.454 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 309756 . C T 1270.05 . AB=0;AO=49;DP=50;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:49:1470:-129.581,-12.0519,0 +NC_000962.3 309765 . C T 1293.48 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 310973 . G A 1694.45 . AB=0;AO=64;DP=67;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 311167 . T C 1532.63 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 311613 . G T 1857.03 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 312138 . C A 1882.97 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 313425 . G T 1741.05 . AB=0;AO=67;DP=69;QA=2010;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:67:2010:-175.475,-15.0719,0 +NC_000962.3 320180 . A G 1185.36 . AB=0;AO=45;DP=47;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 321486 . C T 1067.22 . AB=0;AO=41;DP=42;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 325505 . T C 2116.91 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 326002 . A G 1742.79 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 331588 . G A 1592.81 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 333212 . G C 1827.84 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 333292 . A G 1691.76 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 333534 . G A 1180.35 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 337959 . A C 317.159 . AB=0;AO=13;DP=15;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:13:390:-35.0949,-3.91339,0 +NC_000962.3 338020 . A C 375.229 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 339508 . C T 1481.58 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 340372 . T C 942.307 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 342146 . A C 2389.59 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 343281 . G C 1825.84 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 344288 . C G 1743.57 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 346275 . C G 1211.47 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 350489 . G C 1963.32 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 356528 . A G 1617.58 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 357582 . G A 2512.14 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 362007 . G A 393.363 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 363883 . A G 1883.79 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 367471 . G A 1051.02 . AB=0;AO=41;DP=43;QA=1230;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:1:30:41:1230:-107.984,-9.94365,0 +NC_000962.3 368087 . AGCTGCCGGTGTTGAT A 538.122 . AB=0;AO=21;DP=22;QA=630;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:21:630:-56.6918,-6.32163,0 +NC_000962.3 368107 . C T 516.806 . AB=0;AO=21;DP=23;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:1:30:21:630:-53.9922,-3.92305,0 +NC_000962.3 368948 . T C 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 370782 . G T 814.982 . AB=0;AO=32;DP=34;QA=960;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:1:30:32:960:-83.6879,-7.23438,0 +NC_000962.3 372149 . G A 1354.13 . AB=0;AO=52;DP=54;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 372913 . A C 1402.55 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 373282 . TA T 1339.99 . AB=0;AO=51;DP=53;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 376774 . T C 1452.01 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 378357 . T G 2218.9 . AB=0;AO=85;DP=88;QA=2550;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:2:60:85:2550:-224.068,-20.7904,0 +NC_000962.3 378939 . G C 1987.53 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 379029 . G A 1608.14 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 381030 . A G 1752.77 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 384380 . A C 1696.64 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 386432 . C G 1559.23 . AB=0;AO=60;DP=62;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 390828 . T C 2131.44 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 391853 . A G 1726.14 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 392261 . T C 2073.47 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 393941 . C T 1565.23 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 394803 . G A 1185.12 . AB=0;AO=47;DP=49;QA=1410;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:2:60:47:1410:-121.482,-9.05129,0 +NC_000962.3 396750 . G A 1645.36 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 399909 . TG T 1496.58 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 403980 . G A 1798.92 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 404326 . T C 1643.98 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 406274 . T C 1022.75 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 406389 . G A 1330.71 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 408178 . C T 1898.18 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 412280 . T G 1644.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 414486 . C T 1399.32 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 420008 . A G 2350.46 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 420405 . C T 1470.23 . AB=0;AO=56;DP=58;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 423334 . G A 1663.26 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 424250 . A G 1291.72 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 424320 . T TC 1102.21 . AB=0;AO=42;DP=44;QA=1260;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 424790 . C CTA 1614.92 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 424932 . T A 1098.42 . AB=0;AO=43;DP=45;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:43:1290:-113.384,-10.5457,0 +NC_000962.3 426768 . C T 507.193 . AB=0;AO=20;DP=21;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:20:600:-53.9922,-6.0206,0 +NC_000962.3 428698 . C T 1498.43 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 429897 . C T 1299.76 . AB=0;AO=50;DP=53;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:50:1500:-132.281,-12.6529,0 +NC_000962.3 430018 . G T 1539.62 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 432195 . T C 1634.5 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 434327 . A G 921.486 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 438271 . G A 1433.55 . AB=0;AO=55;DP=57;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 439711 . T C 1609.27 . AB=0;AO=61;DP=67;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 445780 . C T 1187.22 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 447442 . C T 2422.48 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 447525 . G C 2566.04 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 448581 . C T 1815.96 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 449900 . G C 1502.95 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 452288 . C T 873.95 . AB=0;AO=36;DP=38;QA=1080;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:2:60:36:1080:-91.7867,-5.73996,0 +NC_000962.3 454295 . T C 1283.44 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 455325 . CGGGT GGGGC 1803.75 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 456511 . G A 1499.68 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 457452 . T G 1215.94 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 459399 . A C 1915.4 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 464914 . G A 1612 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 468357 . A G 348.648 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 469042 . C T 798.811 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 471469 . C T 1935.92 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 471666 . A G 1904.59 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 472471 . G A 1360.86 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 472711 . T TTTGTGGGCC 1132.09 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.054,-12.9443,0 +NC_000962.3 475178 . T C 995.635 . AB=0;AO=38;DP=38;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:38:1140:-102.885,-11.4391,0 +NC_000962.3 476830 . G A 1099.39 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 477214 . G T 1349.49 . AB=0;AO=52;DP=53;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:52:1560:-137.68,-12.955,0 +NC_000962.3 483935 . T G 2071.14 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 485230 . C T 2825.95 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 485631 . C T 2046.98 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 485785 . T G 1909.66 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 489935 . G C 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 490972 . C A 1803.97 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 491742 . T C 1340.27 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 492150 . G C 1508.42 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 492655 . G A 1432.62 . AB=0;AO=55;DP=60;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 495473 . C T 1819.27 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 498531 . A G 2318.33 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 498557 . C A 2234.4 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 502589 . C G 1778.94 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 503354 . G C 1946.52 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 505974 . G A 2420.04 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 513257 . T C 1987.09 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 514657 . T G 1186.49 . AB=0;AO=45;DP=47;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 517358 . T C 1375.75 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 517411 . A G 1392.68 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 519185 . T G 1645.89 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 520400 . T G 1752.77 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 522081 . A G 1483.42 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 524891 . C A 2154.17 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 527316 . C G 2235.14 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 528354 . C A 1800.42 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 529363 . C T 2069.37 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 530845 . C T 2075.02 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 534427 . T A 1516.74 . AB=0;AO=58;DP=60;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 541201 . A G 1930.39 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 542977 . C T 1769.94 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 546357 . A G 1693.93 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 549251 . C T 1189.11 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 549747 . G A 2500.94 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 551525 . A C 1720.05 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 555945 . T C 1502.95 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 555991 . A G 1560.49 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 556035 . G T 1558.81 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 560664 . CAA TAG 2768.57 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 564723 . C T 1597.79 . AB=0;AO=61;DP=63;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 565404 . G T 1515.26 . AB=0;AO=58;DP=60;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 565655 . A G 1509.93 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 568693 . G T 1625.5 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 573262 . A G 1344.36 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 573384 . T G 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 580336 . C A 1696.16 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 584171 . T C 1669.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 584511 . G T 2072.02 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 590436 . T C 1475.42 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 590763 . G C 1660.02 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 591965 . G A 2012.35 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 595501 . G A 876.223 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 597816 . A G 2560.66 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 598475 . G A 1604.07 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 599868 . A G 2488.49 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 610120 . T G 1589.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 614989 . AA GC 1938.52 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 615938 . G A 1690.96 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 621390 . G A 1640.42 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 624349 . G GT 624.53 . AB=0;AO=25;DP=28;QA=750;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:28:1:30:25:750:-64.7906,-5.12717,0 +NC_000962.3 626743 . A G 1400.84 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 627350 . C G 1181.83 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 630722 . G C 1105.21 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 634586 . C T 1235.57 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 636783 . C T 1312.91 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 637319 . G A 1535.33 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 643483 . G A 1302.5 . AB=0;AO=50;DP=52;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:50:1500:-132.281,-12.6529,0 +NC_000962.3 646531 . A T 1669.85 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 647833 . T G 1808.01 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 648002 . T G 1912.29 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 648856 . T C 1910.38 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 649345 . C T 1962.6 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 655707 . G A 2287.57 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 655986 . T G 1993.53 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 657578 . A G 2070.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 659341 . T C 2217.25 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 660091 . C T 1020.56 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 662911 . T C 1883.8 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 665293 . A G 1724.83 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 669398 . T C 1131.41 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 670545 . G A 1593.01 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 672487 . CGGTC TGGTG 328.084 . AB=0;AO=13;DP=16;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:13:390:-35.0949,-3.91339,0 +NC_000962.3 673066 . C G 652.941 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 673238 . A G 350.546 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 678440 . C T 1888.39 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 684290 . A G 1585.35 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 684391 . CT C 1634.26 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.317,-18.6639,0 +NC_000962.3 685461 . C G 1573.03 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 685608 . T C 1016.6 . AB=0;AO=39;DP=41;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 685712 . C A 1103.56 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 685955 . G A 1118.32 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 686972 . T C 1584.96 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 688792 . T TG 2150.33 . AB=0;AO=81;DP=84;QA=2430;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 690167 . C T 1194.98 . AB=0;AO=46;DP=49;QA=1380;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:1:30:46:1380:-121.482,-11.4488,0 +NC_000962.3 690248 . C A 1459.3 . AB=0;AO=56;DP=59;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 690450 . A C 1553.23 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 690465 . T G 1511.95 . AB=0;AO=59;DP=62;QA=1770;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:59:1770:-153.878,-12.9636,0 +NC_000962.3 698968 . G A 1155.51 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 700776 . T C 1426.57 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 701867 . C T 782.863 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 704997 . G A 1431.01 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 705081 . C T 1461.84 . AB=0;AO=56;DP=58;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 705570 . C T 840.727 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 705602 . T C 603.942 . AB=0;AO=24;DP=28;QA=720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:1:30:24:720:-62.0782,-4.83115,0 +NC_000962.3 712192 . G GA 1498.49 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.819,-17.1587,0 +NC_000962.3 712693 . A G 1481.58 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 713310 . T C 1423.66 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 715266 . A G 1617.92 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 717588 . A G 1402.87 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 719545 . A G 1322.44 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 720863 . G T 1456.33 . AB=0;AO=56;DP=58;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 722852 . G A 1563.49 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 726498 . C A 1403.84 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 728897 . C T 1990.55 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 730087 . G A 2152.05 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 734116 . T C 1806.49 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 745876 . C G 965.417 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 749968 . T C 1301.47 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 752046 . C T 1850.89 . AB=0;AO=71;DP=73;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 753668 . C T 1429.11 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 754186 . A G 807.988 . AB=0;AO=31;DP=33;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:31:930:-83.6879,-9.33193,0 +NC_000962.3 754387 . G A 1374.76 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 754992 . ATCGGCCCAG A 1151.71 . AB=0;AO=44;DP=46;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:44:1320:-118.754,-13.2453,0 +NC_000962.3 755032 . G A 1455.45 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 757182 . A G 1546.12 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 759587 . T C 1450.76 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 763031 . T C 1393.42 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 763884 . CCC TCA 1749.25 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 765171 . C T 1911.68 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 767230 . G A 1480.97 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 767414 . G A 1128.62 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 767609 . A G 1565.52 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 771950 . C T 1183.08 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 775639 . T C 1561.44 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 776100 . G A 2258.77 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 777581 . G T 1545.63 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 779789 . G C 1758.76 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 781395 . T C 2288.77 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 784450 . C T 2423.99 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 786137 . A C 2107.4 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 788354 . C A 1809.62 . AB=0;AO=69;DP=71;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 789485 . A G 1156.57 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 793897 . C T 1429.74 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 797597 . C T 2216.43 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 799136 . AC A 1695.5 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.746,-19.2659,0 +NC_000962.3 800357 . C A 1569 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 810287 . C G 1640.09 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 811492 . C G 1973.94 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 812502 . C T 1613.95 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 815236 . T C 1886.7 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 815851 . A G 1200.87 . AB=0;AO=46;DP=52;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:46:1380:-124.173,-13.8474,0 +NC_000962.3 817696 . G A 2075.46 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 819213 . T C 2152.89 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 820483 . G T 1616.51 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 820752 . C T 1419.71 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 821907 . T C 1320.72 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 829719 . G A 1186.77 . AB=0;AO=46;DP=49;QA=1380;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:1:30:46:1380:-121.482,-11.4488,0 +NC_000962.3 830160 . G A 802.711 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 830868 . G GGC 1572.74 . AB=0;AO=60;DP=68;QA=1800;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 832201 . C T 1534.45 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 832246 . A G 1654.65 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 833374 . GCCGGCGGGGCCGGCGGATTGTTGTTCGGCAACGGCGGCGCGGGCGGGTCCGGCGCGC G 436.591 . AB=0;AO=18;DP=19;QA=540;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:18:540:-48.4291,-5.41854,0 +NC_000962.3 836272 . A G 331.03 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 836291 . A G 221.445 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 837033 . A G 375.598 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 841494 . CA GG 944.239 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 841764 . G C 1329.42 . AB=0;AO=51;DP=53;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:51:1530:-134.98,-12.954,0 +NC_000962.3 842050 . C T 1771 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 846996 . G A 693.59 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 847995 . T C 1506.91 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 848407 . C T 2316.55 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 850985 . A G 1347.05 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 851797 . C A 1373.78 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 852910 . C T 1698.26 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 854252 . GC G 1899.56 . AB=0;AO=72;DP=80;QA=2160;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:72:2160:-194.365,-21.6742,0 +NC_000962.3 854832 . T G 2693.96 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 856034 . T G 2372.03 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 857696 . A G 2048.77 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 865761 . C T 1347.71 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 867296 . C T 1994.22 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 869893 . G A 971.794 . AB=0;AO=38;DP=43;QA=1140;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:1:30:38:1140:-99.875,-9.04357,0 +NC_000962.3 870112 . C T 1129.2 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 871271 . A C 2282.92 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 872113 . C T 2021.02 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 874835 . C CCG 1667.24 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 880482 . C T 2394.52 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 880562 . G T 2041.17 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 882257 . T C 1106.03 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 885689 . G T 1959.13 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 891404 . C T 1016.51 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 893733 . T G 1716.83 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 894888 . T C 1730.67 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 895082 . A G 1415.25 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 895120 . C T 1409.95 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 896629 . C T 1584.37 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 898783 . C T 2100.46 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 900221 . T C 2151.81 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 903550 . T C 2046.31 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 903913 . T C 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 906857 . A G 1266.32 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 910015 . C A 1968.44 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 911261 . T C 1499.59 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 913274 . C G 1961.89 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 916046 . T G 1449.19 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 916281 . C T 1646.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 921813 . C G 1231.89 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 925342 . C CG 578.706 . AB=0;AO=24;DP=35;QA=720;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:35:1:30:24:720:-62.091,-4.82614,0 +NC_000962.3 928483 . C T 530.566 . AB=0;AO=22;DP=27;QA=660;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:2:60:22:660:-53.9922,-1.8255,0 +NC_000962.3 929748 . C T 250.68 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 931123 . T C 1102.21 . AB=0;AO=42;DP=43;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 932280 . T C 2445.21 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 933699 . G T 1534.15 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 934230 . C G 2609 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 934611 . G T 1264.38 . AB=0;AO=49;DP=50;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:49:1470:-129.581,-12.0519,0 +NC_000962.3 938246 . A G 1808.01 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 940455 . G A 1616.23 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 941845 . C A 1799.95 . AB=0;AO=68;DP=71;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 942756 . C G 1562.33 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 945214 . G A 1802.09 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 948294 . T C 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 949535 . T C 1269.72 . AB=0;AO=49;DP=50;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:49:1470:-129.581,-12.0519,0 +NC_000962.3 951142 . C A 1725.88 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 952597 . C T 1313.61 . AB=0;AO=50;DP=52;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 952810 . CT C 1396.42 . AB=0;AO=53;DP=55;QA=1590;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:53:1590:-142.992,-15.9546,0 +NC_000962.3 953002 . T G 1885.24 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 955524 . A G 1424.65 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 957117 . T C 1883.54 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 960362 . C T 744.024 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 960367 . A G 791.312 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 965573 . C T 2289.17 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 968426 . A AGCCGGGTTG 1542.53 . AB=0;AO=59;DP=61;QA=1770;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:59:1770:-156.577,-15.3622,0 +NC_000962.3 969535 . GC G 753.613 . AB=0;AO=30;DP=31;QA=900;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:30:900:-80.9301,-9.0309,0 +NC_000962.3 972653 . G A 1830.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 976043 . G T 1235.64 . AB=0;AO=48;DP=49;QA=1440;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:1:30:48:1440:-126.882,-11.7509,0 +NC_000962.3 976897 . TG T 1426.93 . AB=0;AO=54;DP=62;QA=1620;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:54:1620:-145.766,-16.2556,0 +NC_000962.3 977196 . G A 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 979704 . G C 1058.1 . AB=0;AO=42;DP=45;QA=1260;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:2:60:42:1260:-107.984,-7.8461,0 +NC_000962.3 986463 . G C 1990.55 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 987601 . C T 1835.43 . AB=0;AO=71;DP=75;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:2:60:71:2130:-186.273,-16.576,0 +NC_000962.3 989858 . T TA 1938.75 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 990001 . G C 1885 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 992206 . C T 2235.35 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 993346 . A C 1858.5 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 996219 . G A 1904.98 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 1002342 . T C 1183.08 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 1009490 . C T 1584.67 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 1010204 . C CG 2007.34 . AB=0;AO=77;DP=80;QA=2310;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:77:2310:-205.17,-20.7807,0 +NC_000962.3 1014815 . T G 2640.38 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 1016131 . C A 2157.15 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1019284 . C CG 1595.54 . AB=0;AO=61;DP=66;QA=1830;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 1020064 . CG C 1401.48 . AB=0;AO=53;DP=58;QA=1590;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1022613 . G A 1851.57 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1023884 . C T 1617.46 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 1024346 . A G 1778.44 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1025106 . T C 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1027727 . G C 948.013 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 1029997 . A G 1880.29 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 1030965 . C A 1733.87 . AB=0;AO=67;DP=69;QA=2010;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:67:2010:-175.475,-15.0719,0 +NC_000962.3 1032524 . T C 1651.65 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1035797 . T G 1081.23 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 1037012 . T C 2183.21 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1037911 . C T 1278.69 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1039981 . T C 1772.88 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1040706 . A C 1388.59 . AB=0;AO=54;DP=57;QA=1620;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:54:1620:-140.38,-11.4585,0 +NC_000962.3 1043136 . C T 1909.91 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1047165 . T C 1349.38 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1048102 . G A 2042.64 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1054784 . C G 1806.49 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1058282 . C T 1812.61 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1061386 . T C 1561.07 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1063765 . G A 1569.57 . AB=0;AO=60;DP=62;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 1063922 . C T 1697.4 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1066038 . A G 1963.76 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1068151 . T C 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1068432 . A G 1941.05 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1070702 . T C 1344 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1072342 . A G 1345 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1074558 . G A 1509.33 . AB=0;AO=58;DP=60;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 1075167 . GCAT G 1323.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1075279 . T C 1629.82 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 1075618 . G A 2122.1 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1076309 . G T 1894.36 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1077312 . A G 1487.45 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1077624 . GC G 1158.23 . AB=0;AO=44;DP=47;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 1077754 . C T 1457.01 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1079927 . C A 1833.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1080192 . G A 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1081681 . T C 1409.41 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 1083755 . A G 1721.3 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1086648 . C A 2020.57 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1087193 . G C 1534.15 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1090188 . A AG 1290.82 . AB=0;AO=49;DP=51;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 1090974 . TCGGCGGCGC T 261.324 . AB=0;AO=11;DP=12;QA=330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:11:330:-29.6957,-3.31133,0 +NC_000962.3 1092180 . GCGGCAA G 1149.25 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 1093082 . G T 965.239 . AB=0;AO=37;DP=38;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 1093406 . A G 1239.59 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1094413 . GCC CCT 618.478 . AB=0;AO=27;DP=28;QA=810;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:27:810:-72.8895,-8.12781,0 +NC_000962.3 1095644 . C T 285.307 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1096508 . CCT GCC 185.729 . AB=0;AO=9;DP=10;QA=270;QR=30;RO=1;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:10:1:30:9:270:-21.5969,-0.0107336,0 +NC_000962.3 1096633 . T G 1157.36 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 1097023 . G A 1797.39 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1098523 . T A 1690.95 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1100234 . T C 2474.32 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.004,-27.9958,0 +NC_000962.3 1103487 . G A 2396.25 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1103995 . C T 1743.37 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1104690 . T G 2081.02 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 1105284 . G A 2613.23 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1106422 . T C 1481.59 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1107940 . A C 1467.32 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1109163 . C G 1333.52 . AB=0;AO=52;DP=54;QA=1560;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:52:1560:-134.98,-10.5564,0 +NC_000962.3 1109975 . A G 1646.69 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 1110956 . T G 1697.45 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1111469 . C T 1404.16 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1111518 . T C 1350.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1113290 . G C 1942.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1113403 . G A 1940.1 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1117405 . C T 1768.77 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1119739 . C T 1371.8 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1121071 . G A 1100.72 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 1123597 . A G 1880.8 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1126889 . G C 1501.17 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1127648 . C A 1832.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1131229 . C CG 1641.53 . AB=0;AO=62;DP=65;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1131300 . G A 1696.6 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1131565 . C T 2287.57 . AB=0;AO=86;DP=89;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1132640 . C T 1636.53 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1139222 . G A 1879.9 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1143832 . A C 1098.65 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 1144585 . A G 756.593 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 1148259 . A G 1355.33 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 1149551 . C T 1611.14 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1150585 . G A 2150.96 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1151163 . A C 1565.52 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1151485 . CGT C 1211.46 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 1155700 . C T 1782.5 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 1157771 . G C 1778.7 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1163134 . T C 2140.4 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1164336 . G A 2262.06 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1165521 . T TA 1294.88 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1166482 . G A 1477.36 . AB=0;AO=56;DP=59;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1168715 . C CT 1625.22 . AB=0;AO=62;DP=65;QA=1860;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 1169447 . G A 508.331 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 1173612 . G A 1561.45 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1178116 . T C 1699.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1182192 . G A 1831.57 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1184826 . G T 1794.4 . AB=0;AO=69;DP=72;QA=2070;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:69:2070:-180.874,-15.9739,0 +NC_000962.3 1189253 . TCGCCGCCGGCGCCGGCGGCCGCGCCGTTGCCGCCGG T 374.137 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 1191741 . G A 801.341 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 1191817 . A C 1410.66 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 1192128 . C T 1840.48 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 1192830 . G A 2046.22 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1199019 . T C 1452.14 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 1200418 . A G 1529.66 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1201285 . A G 1559.99 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1203824 . T C 1885.88 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1211369 . A C 1966.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1212626 . ACGGCGGCGC A 409.707 . AB=0;AO=16;DP=17;QA=480;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 1213007 . CCGGTGGGGCCGGAGGCAA C 400.175 . AB=0;AO=16;DP=17;QA=480;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 1213679 . T TCGGCGACGGCGGCGCCGGTGGCGGCGGCGGGGCCGGCGGCATCGG 340.654 . AB=0;AO=14;DP=15;QA=420;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:14:420:-37.7945,-4.21442,0 +NC_000962.3 1213905 . C G 967.758 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 1220570 . G T 2391.91 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1220680 . T C 2476.21 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 1224367 . T C 841.254 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 1228116 . A G 1457.63 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1230778 . G A 1695.57 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1235446 . T C 2099.59 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1237403 . G A 1478.59 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1248382 . A G 1639.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1248936 . G C 1834.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1248978 . T C 1834.57 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1250340 . A G 1743.76 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 1250357 . T G 1713.6 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1251199 . C T 2156.51 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1252164 . T C 1477.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1252538 . G A 2074.04 . AB=0;AO=79;DP=83;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 1254543 . A C 1881.66 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 1254562 . A G 1938.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1261056 . C T 1240.71 . AB=0;AO=48;DP=50;QA=1440;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:48:1440:-126.882,-12.0509,0 +NC_000962.3 1262230 . C T 1529.67 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1271143 . A AG 1640.98 . AB=0;AO=62;DP=65;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1273250 . G GA 1373.6 . AB=0;AO=53;DP=56;QA=1590;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:53:1590:-140.361,-13.566,0 +NC_000962.3 1275957 . T C 2610.06 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1277869 . G GT 1421.65 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1280806 . G A 1980.16 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1281118 . T C 2369.2 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1281771 . T C 1875.2 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1284754 . G T 1748.61 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1287068 . C T 1194.87 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1287112 . T C 1383.2 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1287160 . A C 1719.24 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1292102 . A G 1509.33 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1300786 . G T 1217.53 . AB=0;AO=47;DP=48;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:1:30:47:1410:-124.182,-11.4499,0 +NC_000962.3 1302055 . C T 1464.32 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1306259 . A G 1668.77 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 1307598 . C G 1315.52 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 1308664 . C T 810.431 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 1310316 . C T 1076.98 . AB=0;AO=41;DP=43;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 1313338 . A GC 1134.98 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 1314617 . C T 2287.17 . AB=0;AO=86;DP=89;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1315191 . A C 1758.76 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 1315884 . G A 1022.5 . AB=0;AO=41;DP=42;QA=1230;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:1:30:41:1230:-107.984,-9.64369,0 +NC_000962.3 1320508 . G A 2426.08 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1320614 . C G 2370.27 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1321658 . G A 1965.18 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1324847 . T C 1773.4 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1327890 . G A 1290.64 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 1328687 . G C 1535.04 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1336540 . G A 1644.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1337545 . A G 1720.24 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1338105 . C T 933.629 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 1339444 . G C 1476.55 . AB=0;AO=60;DP=65;QA=1800;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:5:150:60:1800:-148.479,-5.76894,0 +NC_000962.3 1340052 . G T 1270.23 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 1340208 . G A 1699.09 . AB=0;AO=65;DP=67;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 1340274 . T C 1833.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1340775 . C T 1298.65 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1341040 . CTCAC ATCAT 1343.03 . AB=0;AO=51;DP=54;QA=1530;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 1344857 . C T 1538.59 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1348518 . GCCA G 1318.32 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 1351172 . A G 1400.52 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1353013 . G A 1457.32 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1356648 . C T 1673.4 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1358940 . C A 1299.76 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 1360209 . T C 1884.43 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1362006 . T C 2501.72 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1365837 . C CGG 1695.79 . AB=0;AO=64;DP=69;QA=1920;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1367484 . T G 1589.96 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1368947 . A G 1388.86 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1369389 . C T 1270.91 . AB=0;AO=50;DP=52;QA=1500;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:2:60:50:1500:-129.581,-9.95438,0 +NC_000962.3 1369735 . G A 1168.53 . AB=0;AO=45;DP=47;QA=1350;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:1:30:45:1350:-118.783,-11.1478,0 +NC_000962.3 1369927 . C T 1693.15 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1374065 . T C 1751.37 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1374578 . C T 2417.35 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1374639 . T A 2289.97 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1375724 . A C 1419.76 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1382628 . T C 1211.49 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1385267 . C A 430.138 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 1387211 . G A 1446.77 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 1389866 . C T 1963.76 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1390763 . C T 1748.21 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 1393626 . A G 1294.88 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1395010 . A G 1502.08 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1396922 . T C 1860.96 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1397201 . A G 1449.95 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 1397215 . C G 1430.71 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 1399129 . C T 1147.59 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 1400396 . A G 1642.86 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1409030 . CGGATTTCTATT C 1832.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1410062 . G C 1173.03 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 1411210 . T G 2311.76 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 1411838 . GT G 1938.75 . AB=0;AO=73;DP=76;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1412686 . G A 1757.23 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 1413148 . C T 1152.25 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 1414021 . C T 2400.26 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1414365 . C T 2098.07 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1414564 . A T 1905.46 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 1414653 . C T 2034.78 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1417019 . C T 1293.62 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 1417554 . G C 1902.42 . AB=0;AO=74;DP=77;QA=2220;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:3:90:74:2220:-191.672,-14.7805,0 +NC_000962.3 1417793 . G A 1968.64 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1424699 . T C 1710.36 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1426928 . C T 1707.5 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1438115 . G A 2349.3 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 1440469 . C G 1780.49 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1443354 . C T 551.091 . AB=0;AO=24;DP=25;QA=720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:1:30:24:720:-62.091,-4.52618,0 +NC_000962.3 1445781 . A G 2290.97 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1445977 . C T 2478.66 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1457144 . C T 1979.37 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 1458144 . C A 1801.68 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1465502 . G A 1721.92 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1468420 . G A 202.652 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 1471659 . C T 1776.39 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1474709 . G T 2398.35 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1479085 . T C 1591.1 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1480972 . T C 2052.51 . AB=0;AO=78;DP=80;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:78:2340:-207.87,-21.0818,0 +NC_000962.3 1481185 . A C 1535.59 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1481602 . T G 1793.47 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1482627 . T C 1861.45 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1484708 . A C 1584.77 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1488645 . C G 269.852 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 1490372 . C T 1937.58 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1490905 . A G 2075.02 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1490911 . G A 1996.2 . AB=0;AO=76;DP=78;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:76:2280:-202.471,-20.4797,0 +NC_000962.3 1492194 . T C 1682.53 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1496964 . G T 1436.98 . AB=0;AO=55;DP=57;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 1499274 . C G 1833.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1499293 . C T 1882.33 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1505194 . T C 1584.77 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1505973 . G A 1381.59 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 1509540 . C A 1201.73 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1514010 . G T 1698.79 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1517912 . C T 2006.92 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1521526 . T C 1726.41 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1522862 . C T 2094.78 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1523175 . A C 1779.98 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1523791 . A G 1994.22 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1525160 . G A 1941.28 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1526100 . A G 2039.58 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1526819 . C A 1411.68 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1527802 . C T 1787.44 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1533241 . G C 927.466 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 1533466 . TCCCGT CCCCAC 362.059 . AB=0;AO=17;DP=21;QA=510;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:17:510:-45.8934,-5.11751,0 +NC_000962.3 1533546 . TCGCG GAGCC 1101.01 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 1533583 . G A 1668.14 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1534548 . G A 1511.43 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1535643 . C T 921.376 . AB=0;AO=36;DP=40;QA=1080;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:1:30:36:1080:-94.4863,-8.4385,0 +NC_000962.3 1536251 . G T 1417.59 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1540141 . T C 1265.96 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 1544255 . C T 1989.38 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1545119 . C T 1561.07 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1546703 . C T 1725.62 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1547125 . T C 1859.73 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1547478 . C A 2242.68 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1548087 . G A 1542.14 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 1550719 . C T 1695.25 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1552547 . GCGG ACGGC 1369.45 . AB=0;AO=52;DP=55;QA=1560;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 1559562 . C A 1306.67 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1560912 . G A 1130.4 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 1563431 . C T 1839.94 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1563686 . G T 2208.73 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1563717 . C T 2127.08 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1568178 . C T 1685.29 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1570566 . C A 1884.77 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1573660 . T G 1351.5 . AB=0;AO=52;DP=53;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:52:1560:-137.68,-12.955,0 +NC_000962.3 1574206 . T C 1909.41 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1575793 . A G 1598.64 . AB=0;AO=61;DP=63;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 1580181 . G A 1496.11 . AB=0;AO=58;DP=60;QA=1740;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:2:60:58:1740:-151.178,-12.3626,0 +NC_000962.3 1581377 . C T 1962.13 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1584379 . A C 1350.39 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1585283 . A C 2011.2 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1585404 . G A 1814.22 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1586534 . C A 1484.95 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1588899 . G T 1538.59 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1589739 . C T 1774.93 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1590555 . C T 1435.42 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 1594513 . G A 1028.42 . AB=0;AO=40;DP=43;QA=1200;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:1:30:40:1200:-105.285,-9.64262,0 +NC_000962.3 1595035 . G A 1879.65 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1600685 . C T 1812.61 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1601528 . C T 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1604290 . A T 1748.73 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 1608276 . A C 1672.58 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1609840 . A G 969.141 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 1610076 . C T 911.208 . AB=0;AO=35;DP=36;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 1611283 . T C 1612.39 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1612323 . T C 1157.79 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 1612624 . T TATCGGTACCGGTGCGCCAGGG 490.13 . AB=0;AO=20;DP=29;QA=600;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:29:1:30:20:600:-51.2926,-3.62202,0 +NC_000962.3 1613035 . T C 1156.57 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 1616572 . C T 1350.48 . AB=0;AO=52;DP=54;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 1616831 . A G 1609.45 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1617833 . C T 1345.71 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 1619317 . C G 897.078 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 1624791 . C G 1564.07 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1625259 . A C 2037.33 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1627351 . T C 1774.16 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1630148 . A C 2094.18 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1635527 . G A 1559.97 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1635816 . C T 1295.62 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 1636724 . G GCCGCCGGCC 354.658 . AB=0;AO=14;DP=15;QA=420;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:14:420:-37.7945,-4.21442,0 +NC_000962.3 1636826 . C A 372.174 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 1636918 . C T 190.411 . AB=0;AO=9;DP=10;QA=270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:1:30:9:270:-21.5969,-0.0107336,0 +NC_000962.3 1638020 . T C 720.609 . AB=0;AO=30;DP=31;QA=900;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:1:30:30:900:-78.2887,-6.33236,0 +NC_000962.3 1638364 . C T 1992.15 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1639418 . A G 1402.23 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1639594 . C A 1307.43 . AB=0;AO=51;DP=54;QA=1530;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:51:1530:-132.281,-10.5554,0 +NC_000962.3 1639643 . T C 1383.55 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1640442 . C T 2375.47 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 1644250 . G C 1969.34 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1645802 . T C 1804.97 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1647830 . G A 1294.18 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1650072 . A G 1562.62 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1656178 . C T 697.953 . AB=0;AO=28;DP=29;QA=840;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:1:30:28:840:-72.8895,-5.7303,0 +NC_000962.3 1658535 . G T 1807.5 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1659902 . T C 2045.65 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1659994 . C T 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1662424 . T A 1580.76 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1676290 . C A 1380.56 . AB=0;AO=54;DP=57;QA=1620;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:54:1620:-140.38,-11.4585,0 +NC_000962.3 1688300 . T C 1674.61 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 1689349 . C T 1589.96 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1691520 . T G 2341.34 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 1692141 . A C 2364.95 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1693561 . A G 1824.55 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1694277 . A G 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1694547 . A C 2161.4 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1695674 . G A 2046.76 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1696499 . G GCGGT 1635.96 . AB=0;AO=62;DP=65;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1698911 . G A 1733.1 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 1699849 . G A 1562.62 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1706119 . T C 1479.5 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1706746 . C A 1569.57 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 1709432 . C T 1877.93 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1710356 . C A 1289.59 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1713192 . A G 1588.1 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 1715275 . T C 2017.4 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1716414 . A C 2089.41 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1716472 . A G 2152.93 . AB=0;AO=82;DP=84;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 1718444 . T C 2396.12 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1721490 . C G 1321.88 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1726816 . G T 1675.14 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 1728615 . A C 2180.27 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1728837 . A G 2227.55 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1731329 . C T 1305.96 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1731563 . A T 1293.4 . AB=0;AO=50;DP=54;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1735903 . A G 2046 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1739390 . A G 1714.98 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1745446 . T A 1830.82 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1748854 . C T 1374.76 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1750465 . T C 1940.81 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1752561 . T C 723.259 . AB=0;AO=28;DP=30;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 1753519 . G GC 542.719 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 1754016 . G GC 1669.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1754299 . A C 1234.05 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 1754983 . C T 1939.22 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1758790 . C T 1134.03 . AB=0;AO=44;DP=45;QA=1320;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:1:30:44:1320:-116.083,-10.5468,0 +NC_000962.3 1759252 . G T 1692.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1760292 . A G 2184.22 . AB=0;AO=83;DP=85;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 1760923 . T C 1426.57 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1766689 . GCA G 1277.38 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 1769780 . C T 2127.51 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1778243 . G T 841.215 . AB=0;AO=33;DP=34;QA=990;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:1:30:33:990:-86.3875,-7.23545,0 +NC_000962.3 1778430 . T C 1157.45 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 1789756 . A G 482.879 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 1789795 . ATCA GTCG 818.773 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 1791823 . T C 1485.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1792777 . TT CC 1476.77 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.119,-16.8577,0 +NC_000962.3 1797577 . A G 1558.83 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1798355 . G A 1322.78 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 1803265 . G A 2146.5 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1804409 . C A 1503.88 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 1814135 . A G 1535.59 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1817976 . A T 1612.39 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1826054 . T C 2156.51 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1826343 . C T 2233.37 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1826624 . G A 2125.35 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1827553 . C G 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1829576 . C T 1442.35 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 1832642 . GG TC 1989.13 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1832738 . C T 1712.72 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 1834319 . G A 1337.91 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1836286 . G C 1439.22 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 1839260 . T G 1324.04 . AB=0;AO=51;DP=52;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:51:1530:-134.98,-12.654,0 +NC_000962.3 1839306 . A G 1160.45 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 1839329 . G A 1079.76 . AB=0;AO=42;DP=43;QA=1260;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:1:30:42:1260:-110.684,-9.94472,0 +NC_000962.3 1839759 . G C 1506.92 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1847919 . C G 1545.14 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 1848147 . C A 1658.25 . AB=0;AO=64;DP=66;QA=1920;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:2:60:64:1920:-167.376,-14.1688,0 +NC_000962.3 1849191 . T C 2083.79 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1849609 . T C 1474.83 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1853974 . C T 1375.09 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1854045 . A G 1265.96 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 1854300 . T C 1204.74 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1856777 . G C 1806.49 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1858170 . C A 1642.04 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1859559 . C A 1702.53 . AB=0;AO=65;DP=67;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 1859989 . C T 1672.97 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 1862446 . C T 1542.53 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 1863660 . C T 281.967 . AB=0;AO=13;DP=14;QA=390;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:1:30:13:390:-32.3953,-1.21485,0 +NC_000962.3 1870983 . G A 1328.75 . AB=0;AO=51;DP=53;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:51:1530:-134.98,-12.954,0 +NC_000962.3 1872959 . A G 1296.97 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1873954 . G T 1597.23 . AB=0;AO=61;DP=63;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 1874710 . G A 1349.72 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1874993 . CG C 1238.95 . AB=0;AO=47;DP=50;QA=1410;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:47:1410:-126.863,-14.1484,0 +NC_000962.3 1876739 . T G 972.009 . AB=0;AO=38;DP=38;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:38:1140:-102.885,-11.4391,0 +NC_000962.3 1883443 . C T 1453.57 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1885772 . G A 1879.79 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 1886263 . C G 1696.38 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1887284 . G A 1231.89 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1887313 . C T 1423.66 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1889073 . G C 1699.33 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1890565 . A G 1957.89 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1894300 . G GGTCTTGCCGC 1183.08 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 1894422 . A G 1347.39 . AB=0;AO=51;DP=53;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 1894765 . G A 1983.63 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1897646 . G C 1678.9 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 1900800 . A G 1482.5 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1901493 . T C 1884.76 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1902156 . G A 1917.97 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1906336 . A G 1452.95 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1907177 . C T 2246.42 . AB=0;AO=86;DP=88;QA=2580;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:2:60:86:2580:-226.767,-20.7915,0 +NC_000962.3 1907296 . G C 2313.38 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1916137 . A G 1377.07 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1917972 . A G 1114.4 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 1919945 . C T 1105.2 . AB=0;AO=43;DP=44;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:1:30:43:1290:-113.384,-10.2458,0 +NC_000962.3 1920120 . G T 1188.36 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 1923985 . G A 1485.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1924765 . T C 2024.01 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 1924874 . G C 2157.99 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1924959 . T C 2152.04 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1931179 . C A 1214.46 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1931470 . G A 1698.25 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1931718 . G C 1426.11 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1933988 . G A 1699.59 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1935695 . T G 2049 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1936525 . G A 1372.46 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1940307 . G T 1402.55 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1943535 . G T 1560.78 . AB=0;AO=59;DP=62;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1943723 . C T 1586.8 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1944107 . A G 1587.09 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1944402 . T C 1213.71 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1950651 . T C 1536.82 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1950767 . T C 1820.81 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1952160 . T C 1420.38 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1956930 . T G 2103.95 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1957607 . C T 2068.93 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 1960284 . C A 1742.53 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1963383 . G A 1987.09 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1963957 . T C 1563.19 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1964532 . G A 1589.39 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1964972 . G A 1614.26 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1967237 . C A 1682.07 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1971725 . G C 1554.38 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1978807 . G T 1272.87 . AB=0;AO=49;DP=51;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:49:1470:-129.581,-12.3519,0 +NC_000962.3 1979026 . C T 1534.7 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1980325 . G A 1725.62 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1983313 . T G 788.746 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 1989370 . C T 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1990256 . T G 516.975 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 1990361 . A G 262.862 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 1992323 . GC G 893.614 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 1993808 . A T 823.428 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 2010614 . G A 1670.13 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2013943 . G C 1484.03 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2017291 . T C 1993.3 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2017560 . A T 1717.65 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2019236 . T G 2157.15 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2022868 . T C 2154.18 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2022997 . G C 1851.57 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2023211 . G T 1995.04 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 2028269 . G A 1936.57 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2028967 . A C 1644.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2030487 . CAT TCA 1254.33 . AB=0;AO=48;DP=50;QA=1440;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 2030521 . T C 1456.39 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2035937 . G A 965.684 . AB=0;AO=37;DP=38;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2039884 . T G 2203.51 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2045310 . A G 463.414 . AB=0;AO=20;DP=22;QA=600;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:2:60:20:600:-48.593,-0.923484,0 +NC_000962.3 2045849 . C T 266.842 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 2047426 . CGCTAACTTCCCGTCTC A 2102.64 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2049065 . T C 1925.15 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2049097 . G C 1984.74 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2050061 . A G 1584.22 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2050822 . G C 669.792 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 2051746 . T C 1495.29 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2052035 . G T 1696.11 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2052687 . G C 1996.05 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2052960 . T TGCAGACCTATGA 1430.74 . AB=0;AO=55;DP=63;QA=1650;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 2055271 . A G 1438.53 . AB=0;AO=55;DP=61;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2057774 . A T 1807.5 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2061191 . T C 1160.06 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 2061433 . T TCCGCCGGCG 578.177 . AB=0;AO=23;DP=25;QA=690;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:23:690:-62.091,-6.92369,0 +NC_000962.3 2062104 . GCCCGCCGGC G 197.137 . AB=0;AO=8;DP=10;QA=240;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:8:240:-21.5969,-2.40824,0 +NC_000962.3 2062922 . T C 1851.11 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2063106 . C T 1509.02 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2066471 . T C 1587.96 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2072190 . A C 2371.82 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2073614 . C T 1589.38 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2074754 . C T 1162.77 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 2078024 . G A 1776.98 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2083124 . T C 1822.27 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2083610 . G C 1646.15 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 2086411 . T C 2023.28 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2090306 . G A 1731.28 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2090400 . T TCGCCAACGCCAC 1221.65 . AB=0;AO=48;DP=52;QA=1440;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:52:2:60:48:1440:-124.182,-9.65228,0 +NC_000962.3 2091783 . C G 1892.29 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 2091967 . G T 1645.08 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2092391 . G T 1512.03 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2092970 . C T 1428.01 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2093715 . T C 1584.67 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2094911 . ACAGCGT A 2017.73 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.141,-22.8783,0 +NC_000962.3 2096094 . C T 1399.97 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2096186 . A G 1813.9 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2096430 . A C 2144.55 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2097144 . G C 1811.89 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2103540 . C A 1610.42 . AB=0;AO=61;DP=65;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2104019 . C G 1942.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2104779 . C T 1722.18 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2108141 . T C 1431.01 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 2108890 . A C 1252.97 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2109523 . C CG 973.756 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2110365 . A C 1557.96 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2114734 . G A 1885.15 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2116903 . C T 1829.83 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2118434 . A G 2183.21 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2118897 . C T 1382.87 . AB=0;AO=53;DP=56;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 2120796 . T A 2209.14 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2120953 . C G 2103.29 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2122625 . 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AB=0;AO=52;DP=54;QA=1560;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:52:1560:-134.98,-10.5564,0 +NC_000962.3 2147641 . C CGTTAGTTCATGCGTA 1194.79 . AB=0;AO=46;DP=49;QA=1380;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:49:1:30:46:1380:-121.464,-11.4588,0 +NC_000962.3 2151678 . G T 1834.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2154724 . C A 2133.85 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2156389 . C G 1557.96 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2156868 . G T 1415.58 . AB=0;AO=55;DP=57;QA=1650;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:55:1650:-143.079,-11.4595,0 +NC_000962.3 2158109 . T C 1724.56 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2158563 . 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T C 1403.52 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2177968 . G T 1229.17 . AB=0;AO=48;DP=52;QA=1440;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:2:60:48:1440:-124.182,-9.65228,0 +NC_000962.3 2183221 . G A 1824.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2183792 . G A 1961.46 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2184311 . A G 1638.19 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2185358 . G A 1623.01 . AB=0;AO=62;DP=65;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 2197065 . C G 1512.88 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 2199052 . C G 1754.39 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 2199416 . A G 1392.62 . AB=0;AO=53;DP=58;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:53:1590:-143.068,-15.9546,0 +NC_000962.3 2202939 . A C 1726.06 . AB=0;AO=66;DP=68;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 2207591 . T TC 2044.21 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2209465 . G A 1564.98 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2211826 . A G 1858.5 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2216370 . G C 1829.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2216443 . C A 1799.88 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2218012 . A G 1293.13 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2218488 . G C 1673.67 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2219375 . A G 224.235 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 2219955 . CG C 2017.57 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 2220512 . T G 1947.63 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2222308 . T C 1209.97 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 2223293 . T C 2101.57 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 2237497 . G C 1591.96 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2238001 . C T 1664.67 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2238930 . A C 2364.36 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2239055 . C T 2013.03 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 2240062 . C G 1943.97 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 2241646 . C T 1910.88 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 2241742 . A G 1587.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2242808 . G A 1349.82 . AB=0;AO=52;DP=55;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 2243034 . T G 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2246960 . G C 1536.52 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2247677 . A C 1494.7 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 2249035 . A G 1684.73 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2251999 . A G 1911.58 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2255942 . G T 1296.62 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2260100 . C T 1403.84 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2260525 . C T 1720.23 . AB=0;AO=65;DP=69;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 2264782 . C A 1721.91 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2265059 . T G 1340.61 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2267246 . C T 1871.99 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2269179 . C T 1618.76 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2269780 . T C 1555.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2270102 . A G 1283.39 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2281917 . A C 1081.64 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2282376 . CC TT 1825.83 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2282787 . C T 2064.25 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2285251 . C A 1709.09 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2287121 . A G 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2296042 . G C 2798.32 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2297766 . G A 863.838 . AB=0;AO=33;DP=34;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 2300237 . A G 1188.73 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2300546 . A T 1282.95 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2300552 . TGGA GGGG 1169.25 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 2301089 . T C 1750.03 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2306453 . GGTCATC CAATTGG 863.838 . AB=0;AO=33;DP=35;QA=990;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 2309356 . G A 1750.29 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2311099 . C G 1650.26 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 2311357 . G A 1535.59 . AB=0;AO=58;DP=60;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2321358 . G C 1293.82 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2326192 . C T 2052.73 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 2327903 . ATGAT A 1255.83 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2328543 . T C 1583.59 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2328954 . C A 1904.98 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2329533 . A G 1079.15 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2330237 . C T 1663 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2331255 . C T 1415.46 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2331620 . A C 1913.49 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2331789 . G T 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2334007 . A G 1748.61 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2335075 . A G 1491.06 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 2335494 . A G 1103.58 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 2335500 . C T 1079.35 . AB=0;AO=42;DP=43;QA=1260;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:1:30:42:1260:-110.684,-9.94472,0 +NC_000962.3 2338194 . AC A 460.641 . AB=0;AO=19;DP=23;QA=570;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 2339255 . A G 1669.04 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2339719 . AGGGGCGC GGGCGTGG 331.084 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 2340201 . C T 650.933 . AB=0;AO=25;DP=30;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:25:750:-67.5225,-7.52575,0 +NC_000962.3 2340621 . C G 701.496 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 2341030 . G A 1293.97 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2341636 . C G 2056.76 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2342403 . C G 1094.4 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 2342649 . A AGGCGTACACAC 1152 . AB=0;AO=44;DP=48;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 2344950 . G A 1641.52 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 2345037 . C A 1278.96 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2348446 . C G 1583.66 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2348482 . G T 1584.47 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2349634 . C T 1183.8 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2350186 . A G 1348.71 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2357268 . TGCC T 500.285 . AB=0;AO=20;DP=21;QA=600;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:20:600:-53.9102,-6.0206,0 +NC_000962.3 2358029 . T TG 1237.68 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 2358245 . C T 1646.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2361399 . G A 1292.93 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2361604 . C G 1506.31 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2362041 . C A 1612.15 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 2367501 . CA C 2127.09 . AB=0;AO=80;DP=83;QA=2400;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 2368564 . TA T 1689.26 . AB=0;AO=64;DP=71;QA=1920;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:64:1920:-172.767,-19.2659,0 +NC_000962.3 2369186 . G C 1566.97 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 2369326 . C G 1346.43 . AB=0;AO=52;DP=54;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 2371562 . C T 1830.08 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2374442 . G A 1666.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2376425 . A G 1671.77 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2379732 . A G 1559.42 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2379743 . C G 1611.43 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2381034 . C A 2121.46 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2381333 . C T 1049.82 . AB=0;AO=40;DP=43;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 2383612 . C G 2041.12 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 2386389 . G A 1464.29 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 2386747 . C T 970.298 . AB=0;AO=37;DP=39;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2387733 . T C 240.767 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 2388641 . G A 1717.12 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2390299 . A G 1781.01 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2393567 . G A 1617.92 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2397760 . C G 1022.31 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 2400031 . G A 2054.27 . AB=0;AO=78;DP=80;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:78:2340:-207.87,-21.0818,0 +NC_000962.3 2412584 . G A 1184.94 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2413246 . C A 998.905 . AB=0;AO=38;DP=41;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 2415656 . G C 1157.33 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 2419142 . A G 893.614 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 2421816 . A G 947.542 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 2421975 . G GGGAA 1076.98 . AB=0;AO=41;DP=42;QA=1230;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 2422687 . C G 1377.07 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 2424864 . A G 1239.23 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2424925 . A G 1452.96 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2425097 . A C 2046.98 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2425471 . T C 1941.75 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2437259 . G T 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2440926 . G T 1540.49 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 2447539 . A G 2796.64 . AB=0;AO=105;DP=107;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 2448288 . G A 1803.46 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2448458 . C T 1853.58 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2449295 . G A 1921.02 . AB=0;AO=73;DP=75;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 2450045 . G A 1938.99 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 2451081 . C G 2132.36 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2451927 . G GCAGC 982.102 . AB=0;AO=39;DP=47;QA=1170;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:47:2:60:39:1170:-99.8856,-6.94301,0 +NC_000962.3 2462871 . G A 1380.94 . AB=0;AO=53;DP=55;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 2464860 . C A 1296.33 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 2468471 . G T 1356.1 . AB=0;AO=52;DP=53;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:52:1560:-137.68,-12.955,0 +NC_000962.3 2470485 . G T 1996.87 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 2470591 . A C 2051.84 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 2470934 . C A 1160.45 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 2472956 . T C 758.934 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 2472961 . CCGGCAGCCCA C 675.994 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.1899,-7.82678,0 +NC_000962.3 2473139 . G A 1016.14 . AB=0;AO=39;DP=48;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 2478018 . G A 1638.75 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2478541 . C T 1262.96 . AB=0;AO=48;DP=51;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 2495500 . T C 2010.09 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2499726 . G A 1864.77 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 2500892 . C T 1799.12 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2501148 . T CC 1319.44 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2503549 . C A 1621.35 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 2508395 . G A 1399.87 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 2509140 . G C 1285.89 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2509181 . C G 1287.09 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2509722 . A G 1750.29 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2511712 . G T 1587.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2516567 . G C 2420.24 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2517610 . G A 919.772 . AB=0;AO=36;DP=39;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:36:1080:-97.1859,-10.8371,0 +NC_000962.3 2518132 . C T 2143.93 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2521342 . T C 1307.4 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2522084 . G A 921.486 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2523205 . G GCGC 917.557 . AB=0;AO=36;DP=37;QA=1080;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:37:1:30:36:1080:-94.4863,-8.13854,0 +NC_000962.3 2525722 . CG C 1690.12 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.016,-19.2659,0 +NC_000962.3 2526974 . T C 1633.94 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2528931 . G A 1631.06 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2529680 . A G 1806.49 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2530434 . G T 1460.93 . AB=0;AO=56;DP=58;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:56:1680:-148.479,-14.4591,0 +NC_000962.3 2531742 . A G 2451.78 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 2532123 . G C 863.534 . AB=0;AO=34;DP=35;QA=1020;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:1:30:34:1020:-89.0871,-7.53648,0 +NC_000962.3 2533237 . G A 1763.25 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2534562 . GGA G 1216.09 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.423,-13.8474,0 +NC_000962.3 2536626 . G A 1299.76 . AB=0;AO=50;DP=52;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:50:1500:-132.281,-12.6529,0 +NC_000962.3 2538793 . G A 1271.47 . AB=0;AO=49;DP=50;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:49:1470:-129.581,-12.0519,0 +NC_000962.3 2542820 . C CG 1589.53 . AB=0;AO=60;DP=63;QA=1800;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2544979 . T A 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2547274 . A G 1646.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2547529 . A AG 1702.01 . AB=0;AO=65;DP=69;QA=1950;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 2553682 . C T 1561.65 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2562783 . T C 1587.96 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2563958 . A C 1503 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2564368 . G GC 1616.23 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2566768 . A GC 1471.83 . AB=0;AO=56;DP=60;QA=1680;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 2569593 . A G 1189.49 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2573434 . G T 1693.96 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2573756 . C A 1677.83 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 2574598 . C T 860.641 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 2577246 . A G 1319.36 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2578626 . A G 1886.22 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2581109 . C A 2341.13 . AB=0;AO=89;DP=91;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 2582324 . G A 1684.47 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2586127 . A G 1500.84 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2589216 . G C 1840.71 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2592063 . GT G 2126.05 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.209,-24.0824,0 +NC_000962.3 2593192 . G A 1692.03 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2598400 . A G 1587.09 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2602575 . G A 2361.24 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2605293 . G T 2238.64 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 2606797 . G GC 1561.44 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2608117 . C A 1403.84 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2608488 . T C 2261.05 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 2611704 . A C 2181.95 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2612632 . C A 2371.43 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2619271 . T C 1403.84 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2622221 . T C 1964.92 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2622508 . C T 1617.07 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2625924 . T C 1400.94 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2626105 . AACC GACG 1371.44 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 2626189 . CGC AGT 1239.14 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 2626196 . A G 1265.81 . AB=0;AO=48;DP=49;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 2626204 . T C 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2626348 . C T 1322.78 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2628613 . T C 1942.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2629359 . C T 1638.99 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2630224 . T TCC 2256.38 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 2631641 . T G 1893.72 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 2632341 . C CA 1858.94 . AB=0;AO=70;DP=73;QA=2100;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2632500 . A G 1912.77 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2637088 . C T 899.992 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2637541 . C T 1049.82 . AB=0;AO=40;DP=41;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 2641300 . G A 1506.01 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2641840 . A G 1989.62 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2642383 . C T 1452.45 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2643653 . G A 1345.71 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 2647429 . G A 1589.39 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2651132 . A G 1107.65 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 2652908 . C G 1377.07 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 2656225 . A G 1562.52 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2660319 . C A 1961.17 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2663210 . G A 1916.55 . AB=0;AO=73;DP=75;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 2663319 . C A 1871.78 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2677910 . G A 1574.82 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2680658 . T G 2532.56 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 2688225 . G C 1691.23 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2691713 . T C 2157.78 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2693194 . CG C 379.871 . AB=0;AO=16;DP=19;QA=480;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 2694026 . C T 1068.66 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2695378 . C G 1885.39 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2696977 . G C 2100.46 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2702450 . G T 1750.95 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2704291 . G A 1184.93 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2704884 . A ACAGCGACCATATCGCCGAGCT 1394.66 . AB=0;AO=53;DP=56;QA=1590;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 2705561 . A G 1214.78 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2709795 . A G 1188.74 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2712913 . C A 1291.74 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 2713795 . C T 1126.17 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 2718852 . T G 1728.15 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2721562 . C G 2146.92 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2723506 . T C 1769.8 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2724180 . TCACGATCGGGTCTCCTCTAG T 966.615 . AB=0;AO=37;DP=40;QA=1110;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2726051 . G A 2076.34 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2727037 . A T 2364.52 . AB=0;AO=90;DP=92;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 2731741 . G A 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2734074 . T C 910.735 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2737572 . C A 917.033 . AB=0;AO=36;DP=37;QA=1080;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:1:30:36:1080:-94.4863,-8.13854,0 +NC_000962.3 2740693 . T C 1719.26 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2740913 . G A 1807.5 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2745739 . G A 1745.99 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2745839 . G A 1528.46 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2746057 . T C 1183.77 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2751072 . G T 1732.33 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2751804 . C T 1320.27 . AB=0;AO=51;DP=52;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:51:1530:-134.98,-12.654,0 +NC_000962.3 2752698 . C A 1879.3 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 2755112 . G A 2196.96 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2759534 . C G 1579.62 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2760152 . A G 1579.5 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.158,-18.0618,0 +NC_000962.3 2764206 . A G 1495.9 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2764939 . G A 1697.5 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 2772960 . G A 1455.45 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2773181 . C T 2181.68 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2773955 . G C 1572.86 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2779136 . T C 1591.31 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2786952 . A G 1747.95 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2790458 . A C 1400.52 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 2791079 . C T 1535 . AB=0;AO=58;DP=60;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2791098 . C T 1571.28 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 2791257 . A T 1541.66 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 2791475 . A G 1078.73 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2795400 . C A 441.874 . AB=0;AO=18;DP=19;QA=540;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:1:30:18:540:-45.8934,-2.72,0 +NC_000962.3 2796131 . GC G 653.21 . AB=0;AO=27;DP=33;QA=810;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:33:2:60:27:810:-67.4741,-3.34067,0 +NC_000962.3 2799488 . CCGCAA C 1884.28 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2803867 . G C 374.137 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 2804817 . C T 465.98 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 2807486 . C A 2590.32 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 2809621 . T C 2007.57 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2809895 . G A 1775.44 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2817158 . C A 1698.56 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 2818837 . A G 2258.18 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2821342 . C T 1538 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2824432 . G A 1909.29 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2825466 . G A 1319.1 . AB=0;AO=50;DP=54;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2827984 . G T 1319.69 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2828019 . T C 1342.34 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 2828104 . C T 1517.17 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2829779 . T C 886.507 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2830525 . C A 1941.28 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2841022 . A G 1640.98 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2847281 . A G 1641.25 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2855259 . A G 2369.59 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2858669 . G T 1347.39 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 2865760 . A G 1933.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2865882 . T C 2209.14 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2867298 . C A 2397.78 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2867347 . A G 2369.1 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2869242 . T C 1699.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2870386 . C T 1968.18 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2873093 . G GCCA 932.455 . AB=0;AO=36;DP=44;QA=1080;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:36:1080:-97.1798,-10.8371,0 +NC_000962.3 2878980 . C T 1670.4 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2880431 . G C 1818.97 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2880702 . G C 1824.08 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2881244 . A G 2259.38 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2881597 . AG A 2007.46 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.052,-22.8783,0 +NC_000962.3 2886570 . A G 1544.27 . AB=0;AO=59;DP=61;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:59:1770:-156.577,-15.3622,0 +NC_000962.3 2888201 . T C 1171.06 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2889633 . T C 1342.65 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2891267 . C T 1730.25 . AB=0;AO=66;DP=68;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 2891728 . A G 1452.65 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2894208 . G A 1638.43 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2894594 . G A 1621.07 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 2894642 . A G 1426.11 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2897528 . G A 1700.4 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2897871 . A G 1314.27 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2899018 . C CG 1906.41 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2899890 . G T 1967.71 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2907073 . C A 1427.2 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 2907840 . T G 2021.93 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2910461 . G T 1704.65 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 2911293 . C G 1590.53 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2912294 . T G 1536.82 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2913880 . G A 1785.02 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 2918113 . G A 1794.86 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2922096 . GGCCGGCGGC G 621.391 . AB=0;AO=26;DP=27;QA=780;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:26:780:-70.132,-7.82678,0 +NC_000962.3 2922984 . T C 814.258 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 2923119 . T TGGCGGCACC 761.627 . AB=0;AO=31;DP=37;QA=930;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:37:2:60:31:930:-78.2887,-4.53477,0 +NC_000962.3 2923391 . T C 1267.38 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2925594 . G A 1646.46 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2925683 . G A 1619.04 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2925962 . T C 1642.64 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2926882 . C T 1880.88 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2927511 . G T 1484.03 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2927939 . T C 2243.49 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 2939373 . G C 2511.96 . AB=0;AO=95;DP=97;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:95:2850:-253.763,-26.1993,0 +NC_000962.3 2939657 . T C 1828.06 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2940608 . C T 2929.47 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 2945816 . C T 1080.4 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 2948650 . T C 1726.41 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2949025 . A G 1312.44 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2952351 . G A 1967.72 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2953307 . G T 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2954439 . T C 1857.35 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2954859 . C T 1241.78 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2955233 . C T 2072.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2957546 . T G 1698.52 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2957568 . CT C 1641.25 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2959324 . A G 1127.61 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 2960857 . C A 410.646 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 2961099 . G A 486.242 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 2983095 . A G 959.355 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 2984740 . A G 1241.05 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2985216 . G A 1529.67 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2987918 . G A 1323.46 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2988630 . C G 1552.89 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 2989683 . C T 2424.75 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2992564 . G A 1372.75 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 2993523 . T C 885.494 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 2994187 . T C 1774.33 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2994964 . C T 1457.94 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3000362 . T C 2316.35 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3003115 . C G 1876.17 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 3005185 . G T 1741.49 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3006898 . G A 1456.08 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3007238 . A G 1165.66 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 3009692 . A G 1558.44 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3010420 . A G 1829.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3015119 . CT C 1565.51 . AB=0;AO=60;DP=66;QA=1800;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:60:1800:-161.967,-18.0618,0 +NC_000962.3 3015379 . G A 1346.36 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 3017465 . T C 2418.29 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3021283 . G A 1680.38 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3022811 . G A 1830.08 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3025431 . C T 2019.38 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 3027606 . C G 1885.25 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3027798 . T C 2091.74 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 3030382 . G A 2008.45 . AB=0;AO=77;DP=80;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:77:2310:-205.17,-20.7807,0 +NC_000962.3 3031168 . A G 1241.05 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3031285 . A T 1504.21 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 3037367 . C T 1374.07 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3037377 . T C 1456.08 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3040078 . C T 1175.03 . AB=0;AO=45;DP=47;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 3041871 . G T 1580.11 . AB=0;AO=61;DP=63;QA=1830;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:2:60:61:1830:-159.277,-13.2657,0 +NC_000962.3 3053973 . C T 1615.1 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3054081 . A G 1452.65 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3054321 . A G 669.7 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 3064632 . G A 1279.56 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3069167 . A G 1503.91 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 3069805 . G C 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3074830 . C T 939.409 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 3078178 . C T 1646.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3078826 . G A 1526.39 . AB=0;AO=58;DP=60;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3079685 . G T 2177.69 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3079877 . A G 2283.34 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3080282 . C A 2145.79 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3080795 . A G 2501 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3081353 . T G 1370.46 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3084944 . C G 2722.4 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 3085119 . G GC 1839.99 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3086261 . T C 2090.56 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3086788 . T C 2234.4 . AB=0;AO=84;DP=87;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3088625 . A G 1075.82 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 3097349 . C T 1691.89 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3099657 . G A 1926.22 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3103682 . T C 1158.51 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3104189 . A G 1857.03 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3105144 . C A 1747.56 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3112877 . G A 1007.87 . AB=0;AO=40;DP=42;QA=1200;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:2:60:40:1200:-102.585,-6.94408,0 +NC_000962.3 3113872 . A T 1766.4 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 3114814 . G A 2507.6 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3115964 . A C 1963.32 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3118000 . A G 1693.68 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3118449 . A G 1481.28 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 3131469 . T TTGTCGGCGA 1588.28 . AB=0;AO=67;DP=79;QA=2010;QR=240;RO=8;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:79:8:240:67:2010:-159.273,-0.990392,0 +NC_000962.3 3132956 . G T 822.497 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3132963 . ACGT GCTG 774.89 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 3132975 . C G 914.675 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 3133054 . CG GC 773.074 . AB=0;AO=30;DP=31;QA=900;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:30:900:-80.9883,-9.0309,0 +NC_000962.3 3133536 . T C 1826.35 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3135852 . G T 540.642 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 3135859 . ACGT GCTG 468.192 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 3135871 . C G 417.942 . AB=0;AO=18;DP=19;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 3137058 . G A 1716.26 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3137237 . T C 1991.01 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3137489 . G A 1469.54 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3137541 . ATCGGCGCGATCAACGGCGCCGCGGTCACCGGCGGGCTCG A 1051.95 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3137681 . G A 1293.83 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3138245 . G A 852.833 . AB=0;AO=33;DP=34;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 3162804 . AC CG 514.452 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 3163788 . CGGCGGCGCCGGAGGCGAAGCTATTCCCGGCGGGGCGTCCACCAACTCCGCCGGCGGTGACGGAGGGGCGGGCGGTACT C 279.095 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 3169993 . A G 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3174496 . A G 1561.07 . AB=0;AO=59;DP=61;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3177884 . C A 1478.59 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 3180988 . C A 1803.46 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3186860 . T G 2098.06 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3188428 . C T 1345.38 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3188769 . A G 1350.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 3189242 . A G 2056.82 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 3189580 . T C 1027.49 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 3190145 . TC T 1788.73 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3190342 . G A 1391.74 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 3194241 . C CG 1725.82 . AB=0;AO=66;DP=68;QA=1980;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 3194392 . T A 1516.95 . AB=0;AO=59;DP=61;QA=1770;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:2:60:59:1770:-153.878,-12.6637,0 +NC_000962.3 3195731 . T C 1698.79 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3197917 . G A 2037.13 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3199862 . T C 1909.41 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3200304 . A G 1134.19 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3202629 . C T 1828.08 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3214481 . G T 1675.14 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 3216553 . G A 1828.09 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3220545 . C T 1694.23 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3221093 . C T 1612.1 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3226181 . A C 1884.28 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3227768 . C A 1317.27 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 3228143 . G T 1340.48 . AB=0;AO=52;DP=54;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 3229692 . G A 1859 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3233605 . G A 1694.72 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3241244 . G A 1833.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3243197 . G A 1337.57 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3244414 . A G 2044.08 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3247089 . G A 1776.4 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3247316 . C G 1475.42 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3247851 . GCCCGG ACTCGC 1054.09 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3247865 . GCAAA TAGGG 1054.52 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3247874 . GTTT ATTC 1134.58 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3247883 . T C 1158.12 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3248074 . GC AT 981.763 . AB=0;AO=38;DP=39;QA=1140;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 3254758 . A C 2419.1 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 3254880 . G T 2235.35 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3256494 . A G 2019.67 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3256665 . A C 1942.78 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 3260430 . C T 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3266030 . A G 840.727 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3269581 . A G 1619.32 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3270784 . A G 1827.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3271037 . A G 1616.23 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3273138 . C G 1539.03 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 3274545 . G A 2079.93 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 3280132 . G A 1907.38 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3293423 . A G 1293.14 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3293601 . T C 1184.94 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 3295124 . C T 822.757 . AB=0;AO=33;DP=35;QA=990;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:2:60:33:990:-83.6879,-4.83687,0 +NC_000962.3 3296371 . G GCCGCGGC 1502.33 . AB=0;AO=58;DP=66;QA=1740;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:58:1740:-153.871,-15.0622,0 +NC_000962.3 3296721 . C G 1833.71 . AB=0;AO=71;DP=73;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:2:60:71:2130:-186.273,-16.276,0 +NC_000962.3 3296843 . A G 1911.2 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3299413 . G A 1909.89 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3302683 . C T 1257.25 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 3306163 . CGGCACTGTGGCG C 1435.96 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3306594 . T G 1830.14 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 3308446 . T C 2477.51 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 3308606 . G A 2239.04 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 3311119 . G C 1936.63 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3312942 . G A 1753.29 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3314243 . G A 1903.58 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3314412 . A G 2226.16 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3315154 . G A 1927.58 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3326150 . A G 1677.02 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 3326554 . A C 1699.33 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3327780 . C T 2123.18 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3328495 . G C 1485.94 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 3330725 . C T 1512.01 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 3330952 . T G 1641.19 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3331361 . ACG A 1184.6 . AB=0;AO=45;DP=47;QA=1350;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 3332276 . G C 1017.38 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 3335708 . G C 1694.49 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3336825 . T C 509.507 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 3338603 . G C 1453.27 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3347293 . C T 2125.79 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3350883 . C G 853.768 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3351472 . G A 1668.77 . AB=0;AO=63;DP=65;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3351757 . CG C 1399.61 . AB=0;AO=53;DP=57;QA=1590;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:53:1590:-143.053,-15.9546,0 +NC_000962.3 3352932 . C G 1722.45 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3358235 . A T 1638.2 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3363338 . A G 1585.37 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3364142 . G A 1130.79 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3365841 . G A 1485.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3366409 . GATCACATCACC G 1481.59 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3367765 . G A 1346.36 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 3369869 . G T 1481.42 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 3371260 . T C 1562.62 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3377786 . A G 1032.28 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3378828 . C A 1056.51 . AB=0;AO=41;DP=42;QA=1230;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:1:30:41:1230:-107.984,-9.64369,0 +NC_000962.3 3379390 . A C 1421.47 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3379708 . GAGCG CAGCC 638.93 . AB=0;AO=25;DP=26;QA=750;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:25:750:-67.4902,-7.52575,0 +NC_000962.3 3379718 . T C 667.004 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 3379726 . CCCCGGCCAAC ACCCCGTCACA 648.908 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 3379742 . T C 753.683 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3379751 . A C 832.239 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3379757 . A C 858.066 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3379763 . G A 909.766 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 3379784 . CCCCC ACCCG 936.48 . AB=0;AO=36;DP=38;QA=1080;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:36:1080:-97.1859,-10.8371,0 +NC_000962.3 3380226 . A G 749.587 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 3385542 . C G 1142.4 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3392523 . G A 1184.22 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 3393361 . C G 1715.74 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3397850 . G GT 1160.06 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3401850 . G A 1642.36 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3401871 . A G 1532.97 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3402816 . C T 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3403250 . C T 1650.8 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 3404376 . C G 1969.57 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3406798 . G A 1912.77 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3407028 . C T 1860.71 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3415180 . ACACCTAGGGGGTGG A 1181.9 . AB=0;AO=47;DP=49;QA=1410;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:49:2:60:47:1410:-121.482,-9.05129,0 +NC_000962.3 3415332 . A G 1512.01 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 3420825 . A G 1615.38 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3423249 . C CGCGAGCAGACGCAGAATCGCCCAAAATCCAAGATTTTGAGGCGATTCTGCGTCTGCTCGCGCAACCGG 432.112 . AB=0;AO=17;DP=19;QA=510;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:17:510:-45.8934,-5.11751,0 +NC_000962.3 3424462 . C T 2153.32 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3425854 . C T 1455.14 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3427632 . C T 2008.58 . AB=0;AO=78;DP=82;QA=2340;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:3:90:78:2340:-202.471,-16.2846,0 +NC_000962.3 3428917 . C A 2559.45 . AB=0;AO=97;DP=100;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 3429540 . C G 1746.12 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3431407 . G T 1472.24 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3435307 . A C 2047.66 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3440464 . TGTGG GGTGC 1228.37 . AB=0;AO=47;DP=50;QA=1410;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:47:1410:-126.936,-14.1484,0 +NC_000962.3 3440542 . A G 1588.81 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3442240 . C A 1696.42 . AB=0;AO=65;DP=68;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 3444903 . C CCGG 1408.15 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 3446677 . C T 1878.2 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3447480 . A C 2048.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3448714 . G C 1668.77 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3450725 . T C 2047.21 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3451002 . A G 1834.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3453382 . C T 1559.68 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3454263 . C G 1883.78 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3455686 . G C 1502.65 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3456666 . A G 2018.47 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 3459929 . A G 1687.19 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3460765 . G C 1964.48 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3462135 . G C 1591.1 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3462178 . G A 1536.52 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3464629 . A G 2208.72 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3466919 . C G 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3467465 . C G 2450.46 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3473996 . G GA 1796.67 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3474597 . C A 1668.22 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3475159 . A G 1825.79 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3479373 . C A 1990.55 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3479561 . G A 1970.38 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 3480474 . G A 2068.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3480789 . T C 2150.35 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3481475 . G A 557.015 . AB=0;AO=24;DP=25;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:24:720:-64.7906,-7.22472,0 +NC_000962.3 3486977 . A G 1291.82 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 3494295 . GGC G 1983.92 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.711,-22.5773,0 +NC_000962.3 3494820 . CG C 1532.05 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3496264 . C T 1965.18 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3497586 . C G 2282.75 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3498418 . A G 1716.76 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3503895 . C T 1131.58 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3505005 . A C 1725.62 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3509091 . G C 1987.56 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3510120 . T G 1510.23 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3518167 . A G 1565.23 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3518555 . A G 1802.73 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3521044 . A G 1507.22 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3526986 . A G 1780.24 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3527483 . T C 1969.11 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3527948 . AGCCGGCGTTTCCGAAGCCCGTGTTGGTGTC A 1022.74 . AB=0;AO=39;DP=42;QA=1170;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 3530145 . C A 1700.4 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3530955 . C G 2182.79 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3533759 . G A 1740.37 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3535948 . A G 1377.4 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3536008 . G T 1372.13 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3539139 . CG C 1236.59 . AB=0;AO=47;DP=49;QA=1410;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 3555699 . A G 1958.66 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3556275 . A G 2125.79 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3557634 . G A 946.126 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 3560645 . C T 2192.47 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3566923 . A ACGCTTGTCGG 937.064 . AB=0;AO=39;DP=46;QA=1170;QR=120;RO=4;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:4:120:39:1170:-94.4863,-2.14585,0 +NC_000962.3 3568359 . G C 1477.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3571834 . T G 1708.22 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3573636 . T C 1913.01 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3574258 . G A 1927.18 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3577958 . A G 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3580636 . CT C 1574.86 . AB=0;AO=60;DP=62;QA=1800;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:60:1800:-161.947,-18.0618,0 +NC_000962.3 3581414 . A G 2344.56 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3590686 . G GC 1884.1 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 3591063 . T C 2149.07 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3597682 . C T 1346.05 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3604821 . G C 1027.92 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 3606394 . T C 1704.44 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 3610391 . A AC 1454.63 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3610668 . GGGGTC G 1534.45 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3614982 . T C 1642.64 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3617220 . C T 1094.45 . AB=0;AO=42;DP=43;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 3617763 . ACCGGCCGGCACT A 1373.08 . AB=0;AO=52;DP=54;QA=1560;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3621423 . A G 1564.65 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3622441 . A C 1813.36 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 3624486 . T C 1320.46 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 3625065 . T G 1941.04 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3629776 . A G 1375.75 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3638093 . G A 1833.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3639650 . C A 1726.41 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3647041 . A G 2021.02 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3647591 . A G 1507.52 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3650996 . T C 1456.9 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 3657710 . C G 1719.53 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3658266 . C G 1534.45 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3661802 . C T 1481.59 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3670040 . C T 1371.8 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3670118 . G T 1415.04 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3671532 . G C 1419.71 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 3671843 . A C 1296.27 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3672105 . G C 1236.66 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3678091 . G A 1832.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3679949 . A G 1158.12 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3681548 . A C 1988.7 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3683237 . G T 1504.18 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3683282 . C T 1530.86 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3683697 . C T 2179.79 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3683715 . T G 2183 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3687372 . A G 1615.2 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3689523 . G T 1313.85 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 3690016 . A G 1444.19 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3693681 . A C 1461.85 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 3696181 . A G 1948.6 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3697708 . A G 2499.65 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 3704261 . C A 1678.36 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 3704596 . G C 2137.22 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3714211 . G T 1696.64 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3714757 . A C 1732.07 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 3715840 . G A 1563.2 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3718357 . C T 1374.44 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3721806 . G C 1133.79 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3722271 . C T 1904.11 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3723901 . G GT 1676.22 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 3730411 . G A 1241.04 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 3730426 . G A 1026.86 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3730466 . A G 783.786 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3730582 . G A 276.556 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 3730978 . G A 349.624 . AB=0;AO=14;DP=16;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:14:420:-37.7682,-4.21442,0 +NC_000962.3 3730993 . A G 390.705 . AB=0;AO=16;DP=17;QA=480;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:1:30:16:480:-40.4941,-2.11794,0 +NC_000962.3 3732118 . GAAGG CAAGA 861.698 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3732154 . G A 797.889 . AB=0;AO=31;DP=32;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:31:930:-83.6879,-9.33193,0 +NC_000962.3 3733684 . A G 1857.02 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3734121 . C T 1510.53 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3735749 . A G 694.121 . AB=0;AO=29;DP=30;QA=870;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:1:30:29:870:-75.5891,-6.03133,0 +NC_000962.3 3736179 . G A 719.66 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3736628 . T G 1129.6 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3738416 . TG T 382.643 . AB=0;AO=15;DP=16;QA=450;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 3738516 . C CTGCCGCCGCTGCCGCCGT 324.022 . AB=0;AO=13;DP=15;QA=390;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:13:390:-35.0689,-3.91339,0 +NC_000962.3 3739472 . A ACCGCCGTCC 211.476 . AB=0;AO=9;DP=10;QA=270;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 3740168 . G A 729.325 . AB=0;AO=28;DP=31;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 3743549 . A G 1646.46 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3745483 . C A 926.52 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 3745816 . C T 2211 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3746409 . A G 1587.37 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3746660 . A C 1510.23 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3746702 . CGAC GCTG 1288.72 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3746845 . T C 1374.11 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3746854 . T C 1291.88 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3746869 . GGCCAAT ACCCCAG 1131.58 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3750177 . AA TC 1388.48 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 3750185 . CGAC GGTG 1224.37 . AB=0;AO=47;DP=54;QA=1410;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:47:1410:-126.874,-14.1484,0 +NC_000962.3 3750193 . G A 1470.15 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3750205 . CGACAT TGACGG 1518.6 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3750407 . G C 2371.62 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3750417 . AAGCT TAGCC 2262.06 . AB=0;AO=85;DP=88;QA=2550;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3752207 . A G 1801.42 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3752340 . C T 1805.99 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3753116 . C T 1110.83 . AB=0;AO=43;DP=44;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:1:30:43:1290:-113.384,-10.2458,0 +NC_000962.3 3753164 . T G 1214.83 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 3753414 . TC G 1192.38 . AB=0;AO=46;DP=49;QA=1380;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 3762346 . G A 1538 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3762556 . G A 1566.7 . AB=0;AO=60;DP=62;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 3763539 . C T 2069.93 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3763877 . T C 1243.04 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 3769709 . AG GA 1050.24 . AB=0;AO=40;DP=41;QA=1200;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 3770325 . C T 2211.42 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3771628 . A C 1622.46 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 3772616 . G A 2048.77 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3774077 . T A 1450.57 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3774506 . G A 1406.88 . AB=0;AO=54;DP=56;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:54:1620:-143.079,-13.857,0 +NC_000962.3 3779671 . C CGGCAACGGT 275.612 . AB=0;AO=11;DP=15;QA=330;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:11:330:-29.6473,-3.31133,0 +NC_000962.3 3779892 . G C 516.474 . AB=0;AO=20;DP=21;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:20:600:-53.9922,-6.0206,0 +NC_000962.3 3785946 . A G 1936.87 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3786033 . A G 1854.03 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3788365 . T G 1965.38 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3789276 . C A 1453.7 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3793428 . G T 1913.73 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3793634 . A G 1642.64 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3794867 . C CCA 856.154 . AB=0;AO=35;DP=36;QA=1050;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:36:1:30:35:1050:-91.7867,-7.83751,0 +NC_000962.3 3798095 . A C 1404.33 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 3803517 . TCGG T 296.421 . AB=0;AO=12;DP=13;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3808103 . T C 1753.03 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3811007 . C A 648.874 . AB=0;AO=26;DP=27;QA=780;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:1:30:26:780:-67.4902,-5.12824,0 +NC_000962.3 3811629 . G A 1305.96 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 3813113 . C T 1918.67 . AB=0;AO=73;DP=76;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 3813364 . C T 1935.45 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3815268 . G A 1940.69 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 3815477 . G T 1890.37 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 3817117 . C A 1802.23 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3820545 . A G 370.827 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 3823159 . A T 1562.04 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3826684 . C T 1561.44 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3827650 . C A 2070.16 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3829770 . T C 1536.22 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3830566 . G A 1291.88 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3830695 . A G 1401.57 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 3838871 . A G 1349.72 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 3842620 . A G 390.26 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 3842625 . A G 416.428 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 3843407 . CG C 1373.88 . AB=0;AO=52;DP=55;QA=1560;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:52:1560:-140.361,-15.6536,0 +NC_000962.3 3844756 . GC G 1721.19 . AB=0;AO=65;DP=70;QA=1950;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:65:1950:-175.463,-19.567,0 +NC_000962.3 3844992 . T A 1858.5 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3845168 . G A 1966.79 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3845328 . T C 1625.77 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 3845695 . C T 1803.72 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3847351 . A T 3454.89 . AB=0;AO=130;DP=132;QA=3900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:132:0:0:130:3900:-350.949,-39.1339,0 +NC_000962.3 3847562 . GA AC 1901.11 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3847578 . TCAG CGAC 1709.02 . AB=0;AO=65;DP=67;QA=1950;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3851084 . A G 1983.87 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3851887 . AT CC 1045.53 . AB=0;AO=40;DP=42;QA=1200;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 3854899 . T C 1453.27 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3859893 . C T 1295.23 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3861914 . C T 1953.66 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3862472 . GA G 1612.38 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3864041 . G A 1294.32 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3864995 . T C 2048.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3868738 . C A 1406.24 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 3871246 . T C 1539.18 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3874722 . AT A 2311.77 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3875542 . T C 2098.33 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3876953 . G A 1502.71 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 3877421 . A G 2209.14 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3878630 . CG C 332.739 . AB=0;AO=14;DP=16;QA=420;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:14:420:-37.7945,-4.21442,0 +NC_000962.3 3883444 . T G 1973.25 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 3883467 . A G 2209.76 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3883626 . A G 1207.21 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3884787 . ACAAC GCAAA 382.498 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.3271,-4.81648,0 +NC_000962.3 3884906 . A G 757.774 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3885886 . T C 1417.19 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3892671 . A G 2178.95 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3893480 . G A 1415.04 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3895247 . T CGCC 1559.04 . AB=0;AO=59;DP=63;QA=1770;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3895257 . G C 1662.73 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3895269 . G C 1652.81 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3895281 . TG CA 1652.81 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3895304 . CCAGCTGGGTTCG C 1447.65 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3895727 . C A 1954.6 . AB=0;AO=75;DP=78;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:75:2250:-197.072,-17.7801,0 +NC_000962.3 3896340 . T G 1697.18 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3898408 . A G 2632.35 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 3898869 . C A 1640.98 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3899654 . C A 1616.32 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3902763 . G A 1801.92 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3907069 . CA C 1848.55 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3909235 . G C 1827.09 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3913737 . G A 2125.14 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3920109 . G T 2100.03 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3921094 . C T 1778.44 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3922836 . T C 1537.41 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3928892 . A G 329.781 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3929949 . AGGCAACGGC A 615.681 . AB=0;AO=24;DP=25;QA=720;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:24:720:-64.7906,-7.22472,0 +NC_000962.3 3929996 . G T 726.185 . AB=0;AO=28;DP=28;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:28:840:-75.889,-8.42884,0 +NC_000962.3 3934542 . T G 244.463 . AB=0;AO=10;DP=12;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:10:300:-26.9961,-3.0103,0 +NC_000962.3 3936696 . A G 1010.72 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 3938875 . T C 1833.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3940802 . A G 300.65 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 3942239 . C A 601.262 . AB=0;AO=24;DP=27;QA=720;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:1:30:24:720:-62.091,-4.82614,0 +NC_000962.3 3942377 . C T 625.035 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 3942481 . C G 567.217 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 3942640 . T C 479.72 . AB=0;AO=19;DP=20;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 3942917 . C T 347.262 . AB=0;AO=14;DP=17;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:14:420:-37.7945,-4.21442,0 +NC_000962.3 3943680 . G A 355.317 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 3944807 . T C 753.667 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3951036 . G C 357.658 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 3952518 . A C 1743.91 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3952800 . G A 2089.63 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3958007 . C T 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3958403 . A G 1964.92 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3959418 . C T 1402.41 . AB=0;AO=54;DP=58;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:54:1620:-143.079,-13.857,0 +NC_000962.3 3961373 . T G 2243.7 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 3961802 . A G 1929.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3967223 . G A 2354.94 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3969907 . A G 1724.29 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3970112 . C T 1400.42 . AB=0;AO=54;DP=55;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:54:1620:-143.079,-13.5571,0 +NC_000962.3 3974142 . G A 1690.69 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3979151 . T A 1133.39 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3984321 . G A 1557.91 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3984926 . G A 2076.34 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3989107 . C T 1874.45 . AB=0;AO=71;DP=73;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 3989914 . G T 2074.67 . AB=0;AO=79;DP=82;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 3994898 . A G 1530.3 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3998895 . G A 747.788 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 4003645 . C T 1424.65 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4005114 . G C 1724.83 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 4005607 . T C 1669.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4008747 . A G 1673.4 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4012219 . T C 2072.37 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 4013076 . G A 1499.17 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 4014431 . C T 2148.39 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 4019103 . G T 2342.4 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 4020786 . G A 1646.74 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4022652 . G A 1481.34 . AB=0;AO=56;DP=58;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4024079 . T C 1445.97 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 4024273 . T C 1264.03 . AB=0;AO=48;DP=49;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 4024967 . C G 2437.29 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4026800 . G C 1374.11 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 4026899 . G A 1562.62 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4028752 . A G 1832.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4034827 . C T 1912.29 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4040517 . A G 2071.14 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 4054364 . C T 1908.93 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4054637 . A G 1911.44 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4055801 . GTG ATA 1754.33 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4056416 . C A 2018.25 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4058711 . T C 1294.88 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 4059715 . G A 2151.6 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 4059904 . A G 2370.27 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 4060100 . G A 1083.85 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 4060201 . G A 371.611 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 4060210 . T A 320.542 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 4060230 . G A 194.751 . AB=0;AO=10;DP=11;QA=300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:1:30:10:300:-24.2965,-0.311764,0 +NC_000962.3 4061113 . G T 2203.12 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4067142 . C A 1703.33 . AB=0;AO=65;DP=67;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 4067152 . G A 1856.79 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4069292 . G A 1884.18 . AB=0;AO=71;DP=73;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 4069797 . C T 1844.63 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4072697 . G A 1824.59 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 4077177 . G A 1429.11 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4078863 . C T 2870.27 . AB=0;AO=110;DP=113;QA=3300;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:3:90:110:3300:-288.858,-25.6176,0 +NC_000962.3 4081987 . G C 1485.25 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4081996 . G C 1430.38 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4083360 . T G 1559.71 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4085200 . G C 1879.62 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 4089058 . T C 1747.8 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4093719 . G A 968.915 . AB=0;AO=37;DP=40;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 4095001 . CG C 1237.16 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.123,-14.1484,0 +NC_000962.3 4095295 . T C 1617.92 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4096190 . G A 1424.21 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 4100975 . T C 1228.83 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 4101018 . C T 1162 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 4102929 . G A 1739.14 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4105757 . C T 1671.49 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4106154 . C T 1668.49 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4106239 . G A 1692.29 . AB=0;AO=64;DP=67;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 4107074 . T C 1587.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4111303 . G C 1289.06 . AB=0;AO=49;DP=52;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 4112429 . T C 1690.96 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 4115029 . G A 1389.85 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 4116682 . T C 2447.26 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4116894 . C G 2503.94 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4117161 . C A 2099.59 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4119246 . T C 1563.49 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4120983 . A G 489.955 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 4126087 . T G 2064.05 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 4130711 . G C 2045.43 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4133907 . G A 1591.1 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4137190 . T C 2420.99 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 4138331 . G C 1347.71 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4138377 . A G 1396.3 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 4139074 . G C 1293.14 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 4142689 . G A 1589.02 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4145737 . A G 1389.05 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 4151855 . A G 2175.8 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 4155266 . C G 1253.73 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 4156099 . C A 1809.87 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 4156239 . A G 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4156503 . C T 1552.7 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4158361 . A G 1645.64 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4159195 . T C 1355.12 . AB=0;AO=52;DP=53;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:52:1560:-137.68,-12.955,0 +NC_000962.3 4160533 . TGCGCCCGGC T 2340.97 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 4162339 . A G 1727.2 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 4163558 . G C 1529.05 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 4169666 . GT G 1366.74 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 4169719 . C T 1457.32 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 4170964 . G GA 1785.14 . AB=0;AO=69;DP=72;QA=2070;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:69:2070:-180.874,-15.9739,0 +NC_000962.3 4177882 . C A 2623.77 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 4179089 . C T 2288.45 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 4182492 . G A 1760.2 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 4182695 . G A 2028.26 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 4183957 . G A 1244.9 . AB=0;AO=48;DP=55;QA=1440;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:48:1440:-126.874,-12.0523,0 +NC_000962.3 4184811 . C T 1962.82 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 4187063 . G A 1448.89 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 4187485 . T C 1940.34 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 4187817 . A G 1933.72 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 4189629 . T C 1587.09 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4189721 . G T 1508.08 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 4190285 . T C 2129.66 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4190532 . A C 2350.08 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 4190596 . A C 2389.91 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 4193625 . G A 1826.08 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 4195004 . C A 1742.85 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4197138 . C CT 1689.33 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 4197189 . A G 1596.55 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4198611 . CG C 1180.18 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.424,-13.5464,0 +NC_000962.3 4200220 . A G 1561.45 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4201105 . G A 1597.51 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 4201389 . A G 2237.8 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4202383 . A C 1645.24 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4204441 . A G 1802.99 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 4205120 . A G 2019.6 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4210274 . A G 2292.17 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4210876 . T C 1563.78 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4215484 . G C 1964.25 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4216255 . C G 1476.75 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4216742 . G A 2010.76 . AB=0;AO=76;DP=79;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4217557 . A G 1556.75 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4218940 . G T 1322.78 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 4221490 . C G 1641.53 . AB=0;AO=62;DP=66;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 4222073 . A G 1343.63 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4222852 . G C 2504.85 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4222882 . A G 2498.73 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 4223172 . T C 1097.77 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 4232327 . A G 1511.73 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4234844 . T C 1421.98 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 4240671 . C T 1870.62 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 4241042 . A G 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4242643 . C T 1992.6 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 4243848 . G A 1340.64 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4244096 . C T 1401.9 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 4245969 . C T 1849.84 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4247646 . A C 1534.45 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 4251297 . G C 1423.7 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4254265 . A G 1024.21 . AB=0;AO=42;DP=43;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 4254330 . CCCAATTCGTA C 1344.54 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 4254346 . TT A 1410.7 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 4255922 . A G 1481.58 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4257220 . A G 1445.56 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 4261499 . G A 2273.6 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4263279 . A G 2291.37 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4269387 . T G 1834.32 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4269606 . A G 2259.59 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4275218 . G A 1293.83 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 4275935 . A G 2319.48 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 4276306 . C T 1749.13 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4277032 . G C 1457.66 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4277541 . A G 1938.28 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 4280441 . C A 1638.69 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4281143 . C G 1666.32 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 4281272 . G A 1888.39 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 4286156 . T C 1581.91 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4287164 . A G 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4287361 . C T 2018.93 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4289953 . A G 2047.21 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4290564 . G T 1813.55 . AB=0;AO=70;DP=72;QA=2100;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:70:2100:-183.573,-15.975,0 +NC_000962.3 4290827 . C G 2287.36 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4296015 . G A 1991.69 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4296381 . G T 1698.25 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4300694 . A G 1936.4 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 4302036 . T C 1432.62 . AB=0;AO=55;DP=57;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 4303407 . A C 1553.28 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4306155 . C T 2008.51 . AB=0;AO=77;DP=79;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:77:2310:-202.471,-18.0822,0 +NC_000962.3 4306339 . G T 1800.91 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4307179 . G A 1831.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4307344 . C G 1479.13 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4310743 . T TG 1849.11 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 4313128 . C T 2023.79 . AB=0;AO=77;DP=79;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:77:2310:-205.17,-20.7807,0 +NC_000962.3 4313616 . G A 1976.52 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 4314216 . G A 2235.14 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4314645 . A G 2127.07 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4314843 . G A 2152.45 . AB=0;AO=81;DP=84;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 4316566 . C G 1481.89 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4318424 . TC G 1086.45 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.625,-12.6433,0 +NC_000962.3 4322286 . A G 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4323006 . G A 1642.04 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4323302 . T C 1382.55 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 4329782 . G A 2045.42 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4333196 . G A 2415.41 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 4334425 . G C 1614.92 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 4336597 . C A 1382.55 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 4337574 . A G 1995.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4338242 . G C 1480.73 . AB=0;AO=56;DP=58;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4338595 . GC G 1544.61 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 4338603 . G A 1628.6 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4338732 . G A 2234.11 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4340984 . T TTCCCCGGGTTCCCCTCCCTACCCGGTTTCCCCGGGC 1112.38 . AB=0;AO=44;DP=49;QA=1320;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:49:2:60:44:1320:-113.384,-8.44816,0 +NC_000962.3 4341396 . A AAGGCGCGGCCGC 1117.13 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 4344058 . T C 1858.51 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4350284 . G C 1562.91 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4351039 . G T 1910.73 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4351759 . G C 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4356110 . G C 1609 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 4356723 . G A 1773.31 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4356864 . C CTG 1963.32 . AB=0;AO=74;DP=77;QA=2220;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4357597 . C G 1806.49 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4357773 . G A 2022.38 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 4357946 . C T 2096.59 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4366195 . T C 1801.98 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 4366272 . G C 1583.51 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 4367649 . A G 1562.91 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 4369499 . G A 1206.96 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 4369848 . G A 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4372353 . G C 1857.77 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4372653 . G A 1441.6 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 4374228 . T C 1696.33 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 4375318 . G A 1290.13 . AB=0;AO=49;DP=51;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 4375628 . G T 1857.69 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 4377033 . G C 1482.5 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4379680 . C G 1465.87 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4382054 . T C 1751.73 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4382275 . G T 1303.18 . AB=0;AO=50;DP=51;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:30:50:1500:-132.281,-12.353,0 +NC_000962.3 4383144 . C CCGGGG 1480.42 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4383442 . T C 1511.13 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4383655 . A G 1484.34 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 4384007 . C G 1639.51 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4384197 . A C 1670.4 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4385031 . CG C 609.701 . AB=0;AO=24;DP=26;QA=720;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:24:720:-64.7906,-7.22472,0 +NC_000962.3 4385187 . A G 1341.23 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4385937 . C T 1666.77 . AB=0;AO=63;DP=75;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:63:1890:-170.067,-18.9649,0 +NC_000962.3 4386228 . T C 2627.23 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 4390380 . A G 1016.58 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 4393178 . A G 2014.4 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4394210 . G C 1672.58 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4394319 . G A 1660.76 . AB=0;AO=65;DP=69;QA=1950;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:3:90:65:1950:-167.376,-12.3712,0 +NC_000962.3 4395387 . A G 1751.73 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4395468 . C T 1695.57 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4398732 . G A 1758.5 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 4400660 . AC A 782.892 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 4401400 . A G 1390.77 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 4404247 . G A 1627.18 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4407588 . T C 1724.82 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 4407873 . C A 1642.04 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4408920 . AGGC GGGT 1503 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4409660 . C A 1906.55 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4410386 . G T 2225.46 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4410487 . G A 1748.73 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 4411016 . G A 2107.31 . AB=0;AO=81;DP=83;QA=2430;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:2:60:81:2430:-213.269,-19.2863,0 +NC_000962.3 4411501 . C T 967.344 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 diff --git a/.github/data/variants/DRR261180.vcf b/.github/data/variants/DRR261180.vcf new file mode 100644 index 0000000..f5e02fb --- /dev/null +++ b/.github/data/variants/DRR261180.vcf @@ -0,0 +1,1567 @@ +##fileformat=VCFv4.2 +##FILTER= +##fileDate=20240221 +##source=freeBayes v1.3.6 +##reference=reference/ref.fa +##contig= +##phasing=none +##commandline="freebayes -p 2 -P 0 -C 2 -F 0.05 --min-coverage 10 --min-repeat-entropy 1.0 -q 13 -m 60 --strict-vcf -f reference/ref.fa DRR261180.bam --region NC_000962.3:0-299008" +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##bcftools_viewVersion=1.15.1+htslib-1.16 +##bcftools_viewCommand=view --include 'FMT/GT="1/1" && QUAL>=100 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0' DRR261180.raw.vcf; Date=Wed Feb 21 16:22:45 2024 +##bcftools_annotateVersion=1.15.1+htslib-1.16 +##bcftools_annotateCommand=annotate --remove ^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL; Date=Wed Feb 21 16:22:45 2024 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DRR261180 +NC_000962.3 1849 . C A 2208.6 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 1977 . A G 2610.23 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3211 . T C 1982.08 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.711,-22.5773,0 +NC_000962.3 4013 . T C 1861.45 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 7362 . G C 2530.83 . AB=0;AO=95;DP=98;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 7585 . G C 2152.56 . AB=0;AO=82;DP=84;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 9304 . G A 1699.33 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 11820 . C G 1880.64 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 11879 . A G 1881.77 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 14785 . T C 2638.83 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 14861 . G T 2615.75 . AB=0;AO=99;DP=100;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:99:2970:-264.562,-27.1034,0 +NC_000962.3 15087 . C G 2803.09 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 15117 . C G 2909.77 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 16119 . C A 1962.22 . AB=0;AO=75;DP=80;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 17654 . TGCT GGCC 1198.14 . AB=0;AO=46;DP=52;QA=1380;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 21795 . G A 1903.42 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 24698 . GCCGCGTTGCTCGGGGTAA G 1070.43 . AB=0;AO=44;DP=50;QA=1320;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:50:4:120:44:1320:-107.984,-3.651,0 +NC_000962.3 25610 . G C 1695.57 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 26959 . C G 1774.84 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 28366 . AT A 1561.65 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 34044 . T C 2673.83 . AB=0;AO=101;DP=104;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:101:3030:-269.961,-28.0055,0 +NC_000962.3 35608 . C T 2689.86 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 36008 . G C 1863.31 . AB=0;AO=71;DP=74;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 37031 . C G 1746.12 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 37305 . C G 1964.25 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 37334 . A T 1934.75 . AB=0;AO=73;DP=76;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 39158 . C G 1036.74 . AB=0;AO=40;DP=41;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 42281 . C A 1683.1 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 42967 . G C 2153.54 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 44336 . G T 2277.02 . AB=0;AO=87;DP=89;QA=2610;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:87:2610:-229.467,-21.0925,0 +NC_000962.3 44768 . A G 2142.83 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 48503 . T C 1479.5 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 49360 . C T 1984.08 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 49690 . GCC G 2472.2 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.034,-27.9958,0 +NC_000962.3 50557 . T C 1983.08 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 51949 . A G 2203.54 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 54394 . A G 2299.72 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 55549 . GCCGC TCCGCCGCCGCCGT 1425.72 . AB=0;AO=54;DP=61;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:54:1620:-145.771,-16.2556,0 +NC_000962.3 62049 . A G 1937.03 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 63146 . G T 2366.63 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 65150 . C T 2206.23 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 68337 . T TC 1906.19 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 69989 . G A 2959.6 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 70267 . G T 1781.99 . AB=0;AO=68;DP=70;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:68:2040:-180.874,-18.0715,0 +NC_000962.3 70816 . A G 1936.87 . AB=0;AO=73;DP=76;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 71336 . G C 837.554 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 71584 . C CCGAGCGCTGTTCTGGCGCTAATCTGACGCTAGAATAG 688.362 . AB=0;AO=29;DP=33;QA=870;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:33:3:90:29:870:-70.1899,-1.53413,0 +NC_000962.3 73320 . T G 2045.87 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 75233 . C A 2390.88 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 75940 . G C 1564.07 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 79480 . T C 396.124 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 87468 . C T 2960.88 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 90008 . G T 1216.06 . AB=0;AO=47;DP=50;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:47:1410:-124.182,-11.7498,0 +NC_000962.3 92199 . T G 1791.19 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 94388 . G A 2207.48 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 96894 . C T 2229.47 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 97350 . A C 2134.7 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 99162 . TCGGTGTGCG T 2022.83 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 101539 . C T 2046.09 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 103744 . AGGAATCGTTCGG CGTAGCAGCTTCTCGT 799.122 . AB=0;AO=31;DP=35;QA=930;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:31:930:-83.6879,-9.33193,0 +NC_000962.3 104962 . G A 416.428 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 105007 . CTCAG GTCAA 722.912 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 105021 . G A 744.96 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 105045 . G C 877.715 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 105139 . C A 1584.2 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 105736 . T C 2325.15 . AB=0;AO=88;DP=90;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:88:2640:-234.866,-24.0921,0 +NC_000962.3 116000 . T G 1753.36 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 122109 . A G 1314.27 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 123454 . C T 2830.34 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 123520 . T C 2998.12 . AB=0;AO=113;DP=114;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:113:3390:-305.056,-34.0164,0 +NC_000962.3 125830 . G GA 2278.04 . AB=0;AO=87;DP=93;QA=2610;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 131174 . T TG 2369.12 . AB=0;AO=90;DP=94;QA=2700;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 132417 . C G 543.511 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 133839 . C T 1719.45 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 135329 . C T 1456.94 . AB=0;AO=56;DP=57;QA=1680;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:56:1680:-148.479,-14.1591,0 +NC_000962.3 139297 . G T 2017.8 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 141623 . G A 2746.85 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 143207 . T C 1498.3 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 146087 . T C 2933.86 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 146236 . C G 2231.11 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 147262 . G T 1829.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 154283 . T C 2638.07 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 162151 . GT G 1745.93 . AB=0;AO=66;DP=69;QA=1980;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:66:1980:-178.155,-19.868,0 +NC_000962.3 163705 . CC TT 1451.52 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 174221 . G C 1835.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 177857 . G A 1854.57 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 182824 . G A 2420.8 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 183091 . C G 1742.99 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 188800 . T C 1940.34 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 190816 . A C 1258.68 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 194305 . C CGG 1517.62 . AB=0;AO=58;DP=60;QA=1740;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 194681 . G C 1804.47 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 195682 . C G 2142.63 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 196642 . C T 1930.6 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 199470 . T G 2450.65 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 203038 . T C 2154.39 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 204094 . G T 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 206339 . T C 957.363 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 206481 . CGGG GGGT 721.984 . AB=0;AO=28;DP=28;QA=840;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 213147 . C A 2208.31 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 213281 . C T 1878.1 . AB=0;AO=71;DP=73;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 215977 . C T 2252.07 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 217201 . T C 2232.07 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 222925 . G A 1883.7 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 223942 . T C 1725.62 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 225323 . T C 1420.12 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 227098 . T C 2503.57 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 230170 . C T 2548.96 . AB=0;AO=97;DP=99;QA=2910;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:2:60:97:2910:-256.463,-24.1028,0 +NC_000962.3 230576 . G GT 2363.67 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 231114 . C G 2285.17 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 234477 . T G 1449.19 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 234496 . C CGT 1393.71 . AB=0;AO=53;DP=55;QA=1590;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 249522 . T C 1878.2 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 251575 . G A 2018.93 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 261869 . T C 1528.75 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 262268 . A T 1747.69 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 264129 . G A 2098.55 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 265554 . A C 2236.17 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 267751 . G C 2855.21 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 270430 . G C 1803.2 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 278021 . T C 2207.48 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 278681 . C G 2018.53 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 282892 . C T 1878.83 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 283610 . GCGCT ACGCC 1442.98 . AB=0;AO=55;DP=58;QA=1650;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 285772 . A C 1452.01 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 285871 . A G 1940.34 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 288260 . C T 2238.57 . AB=0;AO=86;DP=89;QA=2580;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:86:2580:-226.767,-21.0914,0 +NC_000962.3 293628 . A AC 1280.51 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 296312 . C T 2713.65 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 304923 . A G 1640.09 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 305188 . G T 1941.85 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 310973 . G A 1935.45 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 311613 . G T 2666.54 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 325505 . T C 1856.04 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 333892 . G C 242.634 . AB=0;AO=10;DP=12;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:10:300:-26.9961,-3.0103,0 +NC_000962.3 335810 . CCCGCCGGCGCCGCCGTTG C 200.172 . AB=0;AO=9;DP=10;QA=270;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 338618 . C G 346.466 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 338844 . AC GT 2045.58 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 339664 . G T 1100.56 . AB=0;AO=42;DP=44;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 340132 . G A 2122.98 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 340372 . T C 852.983 . AB=0;AO=33;DP=37;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 342146 . A C 2674.17 . AB=0;AO=101;DP=102;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:101:3030:-269.961,-27.7055,0 +NC_000962.3 346275 . C G 1645.08 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 353309 . G A 2944.27 . AB=0;AO=111;DP=115;QA=3330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:1:30:111:3330:-296.957,-31.0158,0 +NC_000962.3 353365 . G A 3415.12 . AB=0;AO=128;DP=130;QA=3840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:130:0:0:128:3840:-345.55,-38.5318,0 +NC_000962.3 356528 . A G 1826.57 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 363464 . G A 2137.21 . AB=0;AO=82;DP=85;QA=2460;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:2:60:82:2460:-215.969,-19.8873,0 +NC_000962.3 364854 . C G 1854.08 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 372913 . A C 1724.03 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 373282 . TA T 1334.55 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 374353 . A G 1018.79 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 376774 . T C 1671.22 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 377014 . C T 2177.95 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 379528 . G T 2469.17 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 383716 . C T 882.503 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 384380 . A C 2130.94 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 386432 . C G 2051.41 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 387874 . G A 2208.72 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 390828 . T C 1938.93 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 391853 . A G 1995.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 392261 . T C 1909.77 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 396199 . T C 1870.61 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 403980 . G A 2532.93 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 404326 . T C 2102.86 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 414486 . C T 2012.33 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 420008 . A G 2756.66 . AB=0;AO=105;DP=109;QA=3150;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:2:60:105:3150:-278.06,-26.811,0 +NC_000962.3 424320 . T TC 2065.17 . AB=0;AO=78;DP=81;QA=2340;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 424981 . G A 927.997 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 427310 . TTGCCGAGGTTTGCAC T 767.747 . AB=0;AO=31;DP=33;QA=930;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:33:1:30:31:930:-80.9883,-6.93335,0 +NC_000962.3 428698 . C T 2366.3 . AB=0;AO=89;DP=94;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 432536 . C T 2244.87 . AB=0;AO=85;DP=88;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 441823 . C T 2075.46 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 445780 . C T 2048.77 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 454295 . T C 1183.42 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 454333 . T G 1307.04 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 456594 . T C 1453.26 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 457452 . T G 1365.96 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 459399 . A C 1554.04 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 460413 . C T 2048.33 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 465300 . C T 1723.94 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 467497 . C CG 1286.62 . AB=0;AO=49;DP=52;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 467508 . C CG 1344.79 . AB=0;AO=52;DP=55;QA=1560;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:52:1560:-137.68,-13.255,0 +NC_000962.3 467516 . G C 1479.28 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 467526 . C G 1390.42 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 467546 . G C 1502.05 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 467557 . A C 1531.48 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 467564 . A C 1473.58 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 467585 . G C 1505.08 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 467590 . T C 1530.86 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 467621 . T G 1484.34 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 467638 . G T 1588.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 475178 . T C 1688.81 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 477234 . T G 1101.12 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 483935 . T G 2396.96 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 484502 . GCCAAC G 2233.58 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 484596 . C T 2771.07 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 485810 . CA C 3327.58 . AB=0;AO=125;DP=129;QA=3750;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:129:0:0:125:3750:-337.451,-37.6288,0 +NC_000962.3 489935 . G C 2423.64 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 491742 . T C 2419.82 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 492150 . G C 2403.22 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 496721 . T C 2005.28 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 497491 . G A 1845.84 . AB=0;AO=71;DP=74;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:71:2130:-186.273,-16.576,0 +NC_000962.3 498531 . A G 2123.21 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 498557 . C A 2098.5 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 502589 . C G 1907.86 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 503354 . G C 2174.35 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 505974 . G A 1991.45 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 507028 . GC G 2192.24 . AB=0;AO=83;DP=87;QA=2490;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:83:2490:-224.053,-24.9855,0 +NC_000962.3 513257 . T C 1804.47 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 517358 . T C 1268.1 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 518987 . C T 1503.01 . AB=0;AO=57;DP=63;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 524891 . C A 2453.46 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 533547 . C G 1753.29 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 541201 . A G 2593.67 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 542014 . C G 2959.91 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 542514 . C G 1521.37 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 546357 . A G 2571.7 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 549363 . C G 1934.45 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 551525 . A C 1885.01 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 555991 . A G 2177.27 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 561776 . CC TT 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 565655 . A G 2585.94 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 572591 . C T 1131.79 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 573262 . A G 2235.62 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 574118 . C A 2042.07 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 575907 . C T 1656.42 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 580772 . TGGGGGCACCACCCGCTTGCGGGGGA AG 1253.18 . AB=0;AO=48;DP=49;QA=1440;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:48:1440:-129.581,-14.4494,0 +NC_000962.3 583171 . A C 1475.06 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 584171 . T C 1903.42 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 590436 . T C 1640.98 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 597816 . A G 2633.41 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 598475 . G A 2123.39 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 599868 . A G 1839.99 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 599984 . C G 2129.79 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 605150 . G A 1451.7 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 610120 . T G 2235.76 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 611048 . T G 2315.13 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 620625 . A G 1587.81 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 621598 . C T 2637.03 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 627485 . G A 1400.52 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 628864 . T C 2069.71 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 630722 . G C 1530.3 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 637319 . G A 2279.14 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 640954 . A G 2178.59 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 648002 . T G 2805.96 . AB=0;AO=106;DP=108;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:1:30:106:3180:-283.459,-29.5106,0 +NC_000962.3 648856 . T C 2937.81 . AB=0;AO=113;DP=116;QA=3390;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:3:90:113:3390:-296.957,-26.5207,0 +NC_000962.3 655986 . T G 2858.11 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 657081 . C T 2306.79 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 657142 . C T 2184.47 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 659341 . T C 2566.22 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 662911 . T C 2074.14 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 665293 . A G 1938.92 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 669033 . T A 2422.89 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 669398 . T C 1942.11 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 670545 . G A 2033.89 . AB=0;AO=78;DP=82;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:60:78:2340:-205.17,-18.6832,0 +NC_000962.3 672491 . C G 569.496 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 672512 . ACCGGTGCCG A 247.68 . AB=0;AO=10;DP=11;QA=300;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:10:300:-26.9961,-3.0103,0 +NC_000962.3 672721 . T TGCC 235.392 . AB=0;AO=10;DP=11;QA=300;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:10:300:-26.9414,-3.0103,0 +NC_000962.3 673238 . A G 485.352 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 673564 . C T 373.805 . AB=0;AO=15;DP=16;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 683829 . C T 1780.47 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 685461 . C G 1799.67 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 685608 . T C 1401.58 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 686264 . G A 1903.15 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 686972 . T C 2032.6 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 688344 . G GA 2313.15 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 688792 . T TG 2413.4 . AB=0;AO=91;DP=98;QA=2730;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 690450 . A C 2405.49 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 690465 . T G 2397.2 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 694531 . A G 2396.05 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 695209 . G A 1782.49 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 696917 . G T 1759.02 . AB=0;AO=67;DP=69;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:67:2010:-178.174,-17.7704,0 +NC_000962.3 698968 . G A 1531.15 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 699840 . A C 1387.84 . AB=0;AO=53;DP=58;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 707334 . T C 1287.85 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 712693 . A G 1403.19 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 713310 . T C 1431.33 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 721373 . T G 1561.16 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 725190 . G A 1394.08 . AB=0;AO=54;DP=56;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:54:1620:-143.079,-13.857,0 +NC_000962.3 738522 . T G 2300.86 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 754186 . A G 1322.44 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 757139 . C A 1267.74 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 757182 . A G 1347.05 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 762760 . G C 2008.46 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 763031 . T C 1864.28 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 767414 . G A 1993.53 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 773497 . C A 1646.46 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 775639 . T C 1760.02 . AB=0;AO=68;DP=70;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:68:2040:-178.174,-15.3729,0 +NC_000962.3 776100 . G A 2024.67 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 776182 . C T 2073.34 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 779615 . G C 2234.94 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 781395 . T C 2390.67 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 791249 . C T 3149.37 . AB=0;AO=118;DP=120;QA=3540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:118:3540:-318.554,-35.5215,0 +NC_000962.3 797736 . C T 2423.27 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 798355 . G C 3204.08 . AB=0;AO=120;DP=121;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:0:0:120:3600:-323.953,-36.1236,0 +NC_000962.3 799666 . A G 2530.93 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 804062 . A C 1239.23 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 808519 . T C 2188.76 . AB=0;AO=84;DP=87;QA=2520;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:60:84:2520:-221.368,-20.4894,0 +NC_000962.3 811753 . C T 2012.33 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 820483 . G T 1378.68 . AB=0;AO=53;DP=56;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 820752 . C T 1852.05 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 830868 . G GGC 1347.72 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 835611 . C T 1934.66 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 837033 . A G 373.38 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 840794 . AG GC 874.388 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 841764 . G C 2102.42 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 842030 . C T 1697.99 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 847995 . T C 2365.8 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 852910 . C T 2501.3 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 854252 . GC G 1768.6 . AB=0;AO=67;DP=71;QA=2010;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:67:2010:-180.86,-20.169,0 +NC_000962.3 857696 . A G 2987.08 . AB=0;AO=112;DP=115;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 861216 . T G 2507.24 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 866051 . G A 1739.14 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 868663 . G A 1493.78 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 874835 . C CCG 2987.85 . AB=0;AO=112;DP=116;QA=3360;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 876141 . G T 3367.09 . AB=0;AO=126;DP=126;QA=3780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:126:0:0:126:3780:-340.451,-37.9298,0 +NC_000962.3 880562 . G T 3157.37 . AB=0;AO=119;DP=120;QA=3570;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:1:30:119:3570:-318.554,-33.124,0 +NC_000962.3 881755 . G T 2162.72 . AB=0;AO=84;DP=88;QA=2520;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:84:2520:-218.668,-18.0908,0 +NC_000962.3 882257 . T C 1639.31 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 888992 . AACCTCAACACCCCCTCAAGTGAAGGAGG A 1181.89 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 892416 . C T 2827.74 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 893733 . T G 1859.92 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 900221 . T C 1962.82 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 903537 . G T 1626.81 . AB=0;AO=63;DP=65;QA=1890;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:2:60:63:1890:-164.676,-13.8678,0 +NC_000962.3 903550 . T C 1718.45 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 903913 . T C 1450.57 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 906857 . A G 1832.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 908186 . T C 1345.34 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 909166 . C T 693.704 . AB=0;AO=30;DP=31;QA=900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:30:900:-80.9883,-9.0309,0 +NC_000962.3 916687 . GAGC A 1502.09 . AB=0;AO=57;DP=61;QA=1710;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 919351 . A C 2009.65 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 921234 . G A 1804.97 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 921813 . C G 1537.7 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 925181 . G T 1305.35 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.922,-15.0515,0 +NC_000962.3 925453 . C T 369.175 . AB=0;AO=15;DP=16;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 931123 . T C 1989.4 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 932280 . T C 2314.56 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 934230 . C G 2736.94 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 934611 . G T 1289.97 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 940602 . C G 1751.21 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 941845 . C A 1809.87 . AB=0;AO=69;DP=72;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 945214 . G A 1880.38 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 949535 . T C 1182.64 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 950261 . C T 2267.6 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 951702 . C T 2388.05 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 954101 . C T 1875.2 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 954468 . C G 1853.79 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 955524 . A G 1779.47 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 957117 . T C 2182.16 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 960367 . A G 2338.23 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 968426 . A AGCCGGGTTG 1213.73 . AB=0;AO=48;DP=51;QA=1440;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:51:2:60:48:1440:-124.182,-9.65228,0 +NC_000962.3 969762 . C G 630.817 . AB=0;AO=25;DP=25;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:25:750:-67.7902,-7.52575,0 +NC_000962.3 972980 . C T 1249.26 . AB=0;AO=48;DP=50;QA=1440;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:48:1440:-126.882,-12.0509,0 +NC_000962.3 979704 . G C 1730.77 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 986463 . G C 2737.12 . AB=0;AO=103;DP=105;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 987585 . A AG 1797.42 . AB=0;AO=68;DP=74;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 988604 . G C 2028.03 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 990001 . G C 2182.16 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 991021 . C T 1547.35 . AB=0;AO=60;DP=63;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 991896 . T C 1640.09 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 993346 . A C 2315.92 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 996205 . T C 3016.84 . AB=0;AO=113;DP=113;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:113:3390:-305.356,-34.0164,0 +NC_000962.3 996346 . G A 2769.22 . AB=0;AO=104;DP=106;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 1010204 . C CG 2265.79 . AB=0;AO=86;DP=89;QA=2580;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 1011511 . A C 1917.73 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 1022003 . A C 2451.78 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1024346 . A G 1697.99 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1025106 . T C 2612.17 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1028217 . G A 2126.23 . AB=0;AO=80;DP=82;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1034208 . CGCT C 1471.15 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1034758 . C T 2700.25 . AB=0;AO=102;DP=105;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:1:30:102:3060:-272.661,-28.3065,0 +NC_000962.3 1037012 . T C 1692.83 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1037911 . C T 2125.58 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1040251 . C A 1536.65 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 1047165 . T C 1484.64 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1054784 . C G 2451.77 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1067644 . T G 1321.13 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1068151 . T C 2178.32 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1068432 . A G 1996.28 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1070702 . T C 1845.07 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1071966 . A G 1855.8 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1074558 . G A 1890.37 . AB=0;AO=72;DP=75;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 1075279 . T C 2581.34 . AB=0;AO=97;DP=99;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 1076309 . G T 2022.83 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1076689 . A C 1482.5 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1076880 . C T 1346.36 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1077312 . A G 2960.53 . AB=0;AO=111;DP=113;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 1079927 . C A 2371.63 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 1080192 . G A 1962.86 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1081681 . T C 2204.77 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1087193 . G C 2132.99 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 1090188 . A AG 1480.42 . AB=0;AO=56;DP=61;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1093406 . A G 1476.24 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 1095644 . C T 392.394 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 1095678 . A G 344.253 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 1096508 . CCT GCC 460.092 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 1096567 . A G 957.4 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 1096633 . T G 1399.89 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1097220 . C T 1671.76 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1097442 . C T 2157.2 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1098523 . T A 1511.13 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1099058 . G A 2154.67 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1100234 . T C 2423.8 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1102117 . G A 2967.11 . AB=0;AO=112;DP=113;QA=3360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:112:3360:-299.657,-31.0168,0 +NC_000962.3 1102468 . C A 2370.85 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1102646 . G A 2848.81 . AB=0;AO=107;DP=108;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 1103656 . C T 2650.2 . AB=0;AO=100;DP=101;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 1104690 . T G 3048 . AB=0;AO=115;DP=116;QA=3450;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:1:30:115:3450:-307.756,-31.9199,0 +NC_000962.3 1105686 . CT GC 2987.24 . AB=0;AO=112;DP=114;QA=3360;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 1106422 . T C 2722.06 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1106838 . G C 1538 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1107940 . A C 1926.57 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 1108521 . G A 2265.6 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 1109975 . A G 1536.22 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1111678 . G A 1516.39 . AB=0;AO=59;DP=61;QA=1770;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:2:60:59:1770:-153.878,-12.6637,0 +NC_000962.3 1126889 . G C 2162.66 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1127493 . T C 1721.63 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1127648 . C A 1792.51 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1138182 . C T 2223.47 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1144585 . A G 1467.42 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 1145848 . A C 1500.57 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1148177 . T C 2070.6 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1148259 . A G 2225.03 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1148930 . C T 1671.22 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1149551 . C T 1890.37 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 1150585 . G A 1240.68 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1151054 . C G 2039.32 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1160770 . T A 208.131 . AB=0;AO=10;DP=12;QA=300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:1:30:10:300:-24.2965,-0.61172,0 +NC_000962.3 1163134 . T C 1831.51 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1164336 . G A 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1165521 . T TA 1447.01 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1168009 . GC G 2113.28 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1168715 . C CT 1640.42 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1168776 . T G 1585.37 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1172085 . C A 2240.86 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1173750 . G T 1430.06 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1175343 . C T 1603.23 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1177157 . G A 2208.73 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1178116 . T C 1832.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1180593 . C CG 1721.53 . AB=0;AO=65;DP=67;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:65:1950:-175.445,-19.567,0 +NC_000962.3 1184261 . GCGA CGG 2012.33 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1190093 . A C 1602.07 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1191741 . G A 474.959 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 1197157 . T G 1937.75 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1200418 . A G 1855.5 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1201581 . A C 2304.6 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1211369 . A C 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1212432 . C A 454.051 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 1213679 . T TCGGCGCCGGTGGGGCCGGTGGCGGCGGCGGGGCCGGCGGCATCGG 517.81 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 1215104 . AT A 2257.81 . AB=0;AO=85;DP=88;QA=2550;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1215742 . GC AA 1757.61 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1217065 . C A 255.362 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 1217157 . A C 318.909 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 1218658 . G C 361.839 . AB=0;AO=17;DP=18;QA=510;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:1:30:17:510:-43.1938,-2.41897,0 +NC_000962.3 1218896 . G A 773.235 . AB=0;AO=32;DP=35;QA=960;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:3:90:32:960:-78.2887,-2.13726,0 +NC_000962.3 1220680 . T C 2665.33 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 1224367 . T C 1316.7 . AB=0;AO=50;DP=52;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1227830 . G T 1909.42 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1230778 . G A 2223.3 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1248382 . A G 1777.41 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1248936 . G C 1639.51 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1248978 . T C 1670.4 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1250340 . A G 1884.53 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1251199 . C T 1614.08 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1252053 . AG A 2012.16 . AB=0;AO=76;DP=80;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:76:2280:-205.128,-22.8783,0 +NC_000962.3 1252164 . T C 2246.21 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1254562 . A G 2337.64 . AB=0;AO=89;DP=92;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 1265070 . G T 1340.95 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1273250 . G GA 1541.36 . AB=0;AO=59;DP=62;QA=1770;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:59:1770:-156.577,-15.3622,0 +NC_000962.3 1275957 . T C 2690.52 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 1276588 . C G 1380.94 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1279968 . G C 1993.28 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1281118 . T C 2422.94 . AB=0;AO=92;DP=93;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:92:2760:-245.664,-24.9962,0 +NC_000962.3 1281771 . T C 1858.75 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1285001 . A C 2001.41 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 1286766 . G C 1729.73 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 1288698 . G A 1743.57 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1292102 . A G 1483.42 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1293333 . C G 1323.03 . AB=0;AO=51;DP=52;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:51:1530:-134.98,-12.654,0 +NC_000962.3 1299305 . G A 1865.5 . AB=0;AO=71;DP=73;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 1303326 . C T 2208.02 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1306259 . A G 2640.2 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 1307598 . C G 2392.29 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1313338 . A GC 1348.38 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1315191 . A C 1935.6 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1315884 . G A 1229.55 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1317655 . C T 2426.64 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1322741 . A G 2991.31 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 1327890 . G A 2403.79 . AB=0;AO=91;DP=93;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:91:2730:-242.965,-24.9952,0 +NC_000962.3 1328687 . G C 1886.7 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1329234 . G A 1961.46 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1333669 . T GG 1116.2 . AB=0;AO=43;DP=52;QA=1290;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 1336164 . C T 1175.73 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 1340208 . G A 2234.93 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1342581 . T C 812.249 . AB=0;AO=34;DP=35;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:34:1020:-91.7867,-10.235,0 +NC_000962.3 1349733 . G C 1273.92 . AB=0;AO=49;DP=50;QA=1470;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:49:1470:-129.581,-12.0519,0 +NC_000962.3 1351172 . A G 2316.75 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1357308 . T G 1724.82 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1360209 . T C 1760.99 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1361190 . G A 1859.49 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1361285 . C T 1668.49 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1362006 . T C 1860.96 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1365837 . C CGG 1478.51 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1367484 . T G 2363.93 . AB=0;AO=90;DP=92;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 1368322 . C CG 1020.56 . AB=0;AO=39;DP=41;QA=1170;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 1370852 . T G 1634.52 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1374065 . T C 1984.78 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1374201 . A G 2233.29 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1374685 . C G 1725.09 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1375044 . C G 1611.12 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1375724 . A C 2335.74 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1382628 . T C 2258.62 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1390745 . T C 1830.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1390763 . C T 1777.41 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1393626 . A G 948.013 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 1396922 . T C 1789.6 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1406760 . T TG 1802.73 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1411210 . T G 2261.46 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1413129 . CG C 956.682 . AB=0;AO=37;DP=40;QA=1110;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:37:1110:-99.8693,-11.1381,0 +NC_000962.3 1413148 . C T 1124.41 . AB=0;AO=43;DP=45;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 1414021 . C T 2918.73 . AB=0;AO=111;DP=113;QA=3330;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:2:60:111:3330:-294.257,-28.3172,0 +NC_000962.3 1418863 . C CGGGAGCCA 1624.91 . AB=0;AO=63;DP=68;QA=1890;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:63:1890:-164.676,-14.1677,0 +NC_000962.3 1440469 . C G 2128.37 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1445781 . A G 2201.22 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 1451405 . G A 1586.39 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 1457144 . C T 1432.91 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 1468208 . A C 1349.05 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 1470717 . C G 1883.79 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1471659 . C T 2830.5 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1477596 . C T 2316.55 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1479085 . T C 1968.64 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1482627 . T C 2115 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1484708 . A C 2238.43 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 1490905 . A G 3206.51 . AB=0;AO=120;DP=120;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:120:3600:-324.253,-36.1236,0 +NC_000962.3 1498951 . G T 1921.05 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 1499274 . C G 1491.1 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1501700 . G A 2024 . AB=0;AO=77;DP=80;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:77:2310:-205.17,-20.7807,0 +NC_000962.3 1507141 . C G 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1526311 . G T 2728.4 . AB=0;AO=103;DP=104;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:103:3090:-275.36,-28.3076,0 +NC_000962.3 1526819 . C A 2255.11 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1528643 . C T 2367.27 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1533241 . G C 1589.38 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1533583 . G A 1986.4 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1535129 . T G 2070.83 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1536251 . G T 1613.23 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1540141 . T C 1292.78 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1541798 . C T 1200.32 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1544255 . C T 1991.22 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1546703 . C T 2097.63 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1547125 . T C 2749.7 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 1552547 . G A 1668.49 . AB=0;AO=63;DP=67;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 1556787 . T C 2418.53 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1561939 . G C 2501.31 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 1563717 . C T 2236.37 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1570566 . C A 1875.55 . AB=0;AO=73;DP=77;QA=2190;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:3:90:73:2190:-188.973,-14.7795,0 +NC_000962.3 1573660 . T G 1726.1 . AB=0;AO=67;DP=69;QA=2010;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:2:60:67:2010:-175.475,-15.0719,0 +NC_000962.3 1576481 . T G 1398.01 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 1576527 . G T 1262.36 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 1577241 . G A 1580.31 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 1588899 . G T 1916.54 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 1593331 . G A 1672.58 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1594906 . G A 2125.35 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1595342 . T C 2481.87 . AB=0;AO=94;DP=95;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:94:2820:-251.064,-25.5983,0 +NC_000962.3 1606673 . G T 2443.9 . AB=0;AO=92;DP=95;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1608276 . A C 2310.58 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1609840 . A G 1313.85 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 1613035 . T C 2419.26 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1616061 . C T 2028.26 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 1617302 . G T 2458.8 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 1618978 . T C 250.68 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 1619100 . ACCGGCTCCACCGGCGCCG A 290.669 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1620181 . C G 1619.04 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1624791 . C G 1909.41 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1625332 . C CGGT 1730.92 . AB=0;AO=66;DP=71;QA=1980;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:66:1980:-175.463,-17.4724,0 +NC_000962.3 1627351 . T C 2258.01 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1630148 . A C 1775.96 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1636826 . C A 451.677 . AB=0;AO=19;DP=20;QA=570;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:1:30:19:570:-48.593,-3.02103,0 +NC_000962.3 1638364 . C T 1674.89 . AB=0;AO=70;DP=79;QA=2100;QR=240;RO=8;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:8:240:70:2100:-167.376,-1.88346,0 +NC_000962.3 1639594 . C A 1912.98 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 1643864 . T C 2289.44 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 1645802 . T C 2399.31 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1647436 . G A 1933.96 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1650072 . A G 1507.83 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1651308 . A G 1724.3 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1656826 . G A 1443.79 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1669158 . T C 1989.85 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1676290 . C A 2719.07 . AB=0;AO=102;DP=104;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 1678706 . A C 2479.77 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1688064 . A G 1746.63 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1688300 . T C 1728.31 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 1689349 . C T 2152.02 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1692141 . A C 2746.19 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 1693561 . A G 2065.67 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 1695037 . G A 1940.34 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1695796 . C T 2071.71 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1696671 . CA C 1846.64 . AB=0;AO=70;DP=74;QA=2100;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1697896 . C T 2121.48 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1698911 . G A 2294.79 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 1699849 . G A 2019.89 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1701215 . C T 2193.86 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1706119 . T C 2123.63 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1706685 . C A 2179.41 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 1709432 . C T 1945.35 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 1711670 . C T 2257.41 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1713192 . A G 2822.94 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 1716472 . A G 2068.84 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1722200 . C G 1784.81 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1722228 . A C 1659.42 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1728837 . A G 2727.13 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 1733134 . C T 2715.52 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 1733325 . C G 1899.76 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1733672 . C T 2012.11 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1741352 . C T 1480.67 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 1750963 . C T 2712.56 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1752561 . T C 1105.21 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 1753519 . G GC 726.91 . AB=0;AO=28;DP=29;QA=840;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 1756358 . CG C 1934.5 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1759252 . G T 2288.96 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1760292 . A G 2558.51 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1773835 . A G 2204.13 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1774659 . C T 2559.22 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1778430 . T C 1967.25 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1789564 . CC TA 607.854 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 1789650 . CGTCA TGTCG 1441.53 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1791640 . C T 989.939 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 1792777 . TT CC 2152.47 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1798355 . G A 1997.56 . AB=0;AO=76;DP=78;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:76:2280:-202.471,-20.4797,0 +NC_000962.3 1803265 . G A 2763.39 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 1804409 . C A 2282.14 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1811375 . G T 2401.52 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 1817976 . A T 1992.82 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1819330 . G T 1918.67 . AB=0;AO=73;DP=77;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 1831220 . A C 2558.56 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 1831226 . A G 2547.94 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 1831288 . C T 2262.43 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1834177 . A C 2403.98 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 1836286 . G C 1396 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1837819 . C T 1748.6 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1839759 . G C 1854.57 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1847919 . C G 1995.6 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1849051 . C T 1665.22 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1849609 . T C 2663.54 . AB=0;AO=100;DP=101;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 1849934 . A G 2179.16 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1854300 . T C 1185.36 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 1856777 . G C 1881.28 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1859559 . C A 1716 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1863373 . GCCACCGTCA G 1075.32 . AB=0;AO=41;DP=42;QA=1230;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 1864924 . A ACCGCCGGCCCCGCCGTCGGGT 215.716 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 1877744 . A C 2025.35 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 1878575 . C T 1099.77 . AB=0;AO=42;DP=44;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 1885385 . T G 2081.89 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 1885772 . G A 2581.49 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 1888373 . T C 2667.4 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 1892017 . T C 1566.7 . AB=0;AO=60;DP=64;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 1894300 . G GGTCTTGCCGC 1288.37 . AB=0;AO=49;DP=53;QA=1470;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 1894422 . A G 1879.91 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1897608 . C T 2204.48 . AB=0;AO=83;DP=85;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1901493 . T C 2977.01 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 1902337 . A C 2234.8 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1906078 . A G 2316.12 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 1907296 . G C 2390.86 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1916137 . A G 1639.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1917972 . A G 1698.52 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1924008 . G A 2417.01 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1931179 . C A 2348.99 . AB=0;AO=90;DP=92;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:90:2700:-237.566,-21.9956,0 +NC_000962.3 1931718 . G C 1697.45 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1933988 . G A 2234.4 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1944107 . A G 2012.59 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1944402 . T C 1551.46 . AB=0;AO=59;DP=62;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1947020 . C CCG 2351.62 . AB=0;AO=89;DP=92;QA=2670;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 1950767 . T C 2040.25 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1955760 . CGAA C 869.279 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 1955914 . CCGGAAGTCGATGACCGTTG T 1793.82 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1955941 . G C 1952.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1960284 . C A 1882.97 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1961735 . A G 1938.99 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1967026 . C T 2830.18 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1967237 . C A 2474.58 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1967543 . C A 2260.61 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1971725 . G C 1832.07 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1980652 . G T 1589.34 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 1983195 . ACCC GCCG 301.237 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 1983235 . TTCAA GTCAG 332.063 . AB=0;AO=15;DP=19;QA=450;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:15:450:-40.4823,-4.51545,0 +NC_000962.3 1983291 . C T 723.07 . AB=0;AO=29;DP=30;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:29:870:-78.2887,-8.72987,0 +NC_000962.3 1983313 . T G 873.754 . AB=0;AO=35;DP=36;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 2003105 . C T 1935.84 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2003827 . A C 2931.51 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 2008876 . C G 2204.89 . AB=0;AO=83;DP=85;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2009290 . GC G 1454.32 . AB=0;AO=55;DP=64;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2010614 . G A 1509.33 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2022868 . T C 1671.76 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2023628 . C G 2014.2 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2045310 . A G 652.503 . AB=0;AO=26;DP=27;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:26:780:-70.1899,-7.82678,0 +NC_000962.3 2049065 . T C 1862.56 . AB=0;AO=72;DP=74;QA=2160;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:72:2160:-188.973,-16.577,0 +NC_000962.3 2049097 . G C 1899.84 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2050822 . G C 562.568 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 2051746 . T C 2131.29 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2052035 . G T 2037.71 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2053560 . GC AT 1013.28 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 2055271 . A G 1529.07 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2057774 . A T 1434.47 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2061433 . T TCCGCCGGCG 556.227 . AB=0;AO=22;DP=26;QA=660;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:22:660:-59.3024,-6.62266,0 +NC_000962.3 2067684 . G A 1908.47 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2069771 . C A 2263.85 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2072313 . C A 2090.81 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2074754 . C T 1660.18 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2078246 . C G 1543.42 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2082053 . A G 3468.77 . AB=0;AO=130;DP=131;QA=3900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:131:0:0:130:3900:-350.949,-39.1339,0 +NC_000962.3 2086672 . C T 2178.95 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2094911 . ACAGCGT A 1610.7 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2096186 . A G 2474.92 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 2097270 . C T 2175.59 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2108141 . T C 1503.88 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2108890 . A C 2225.08 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2109523 . C CG 1259.5 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2112832 . A C 2305.61 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2116903 . C T 1731.81 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2122395 . C T 2011.04 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2122976 . C G 2282.09 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2123169 . T G 2021.7 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2128870 . A G 1557.57 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2132334 . C T 1996.89 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 2133468 . T TTCGCATGCCGTCACC 1270.57 . AB=0;AO=50;DP=53;QA=1500;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:53:2:60:50:1500:-129.581,-10.2543,0 +NC_000962.3 2135154 . G T 2208.31 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2135870 . T C 2150.13 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2137521 . A ACTCCGATCAC 1696.86 . AB=0;AO=64;DP=71;QA=1920;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2138436 . A G 2540.05 . AB=0;AO=96;DP=97;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:96:2880:-256.463,-26.2003,0 +NC_000962.3 2138453 . C T 2484.44 . AB=0;AO=94;DP=96;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 2142266 . C A 918.113 . AB=0;AO=37;DP=38;QA=1110;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:1:30:37:1110:-97.1859,-8.43957,0 +NC_000962.3 2143328 . G C 2168.61 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2146065 . C CGGCGGTCGCGGCGGGGCGGGCGGTAGAGGCGGCGACGGCGGGCAA 206.733 . AB=0;AO=9;DP=11;QA=270;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:11:1:30:9:270:-21.5969,-0.31069,0 +NC_000962.3 2147022 . A C 1726.67 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2151222 . T G 1861.37 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 2153725 . CTCATCCCCGTCTCG C 1614.65 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.617,-15.9653,0 +NC_000962.3 2154724 . C A 2265.27 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2158109 . T C 1858.69 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2160998 . G A 2104.16 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2161343 . G GT 2158.46 . AB=0;AO=82;DP=85;QA=2460;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 2163375 . T C 351.137 . AB=0;AO=18;DP=20;QA=540;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:2:60:18:540:-43.1938,-0.321424,0 +NC_000962.3 2165286 . A C 934.115 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2165503 . T A 488.543 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 2167926 . A G 2049 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2172380 . A C 2785.92 . AB=0;AO=105;DP=106;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 2173860 . A C 3105.2 . AB=0;AO=117;DP=119;QA=3510;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:119:1:30:117:3510:-313.155,-32.8219,0 +NC_000962.3 2177366 . C T 2485.17 . AB=0;AO=94;DP=95;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:94:2820:-251.064,-25.5983,0 +NC_000962.3 2179825 . G C 2638.81 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 2181008 . G A 3220.82 . AB=0;AO=121;DP=121;QA=3630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:0:0:121:3630:-326.953,-36.4246,0 +NC_000962.3 2185674 . A G 1484.64 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2185884 . T C 2040.63 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2187587 . G C 2703.71 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 2188642 . C G 2136.39 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2191498 . G T 2386.43 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2198764 . A C 3543.52 . AB=0;AO=134;DP=138;QA=4020;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:138:2:60:134:4020:-356.348,-35.5409,0 +NC_000962.3 2199052 . C G 2739.61 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 2202500 . C T 1992.85 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2204819 . GC G 1773.35 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.845,-20.169,0 +NC_000962.3 2204825 . CG AC 1778.44 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2207591 . T TC 2153.96 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2209465 . G A 1543.11 . AB=0;AO=59;DP=62;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:59:1770:-156.577,-15.3622,0 +NC_000962.3 2211826 . A G 2722.74 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 2216443 . C A 1861.38 . AB=0;AO=71;DP=74;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 2216963 . C G 1780.24 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2220512 . T G 2119.72 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2221584 . G C 2932.45 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 2222357 . T C 2012.36 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2223293 . T C 1940.29 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2225365 . T C 2118.18 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2228967 . A G 2234.4 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 2229801 . C G 2504.6 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2230045 . G A 2532.75 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 2234593 . A G 2154.57 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2235087 . G A 1968.41 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2241031 . AG A 2395.48 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2244421 . G T 1289.78 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2245864 . C A 2070.33 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 2247677 . A C 2802.27 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2248482 . A G 2254.77 . AB=0;AO=85;DP=87;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 2251605 . G A 2507.79 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2251999 . A G 2264.26 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2254567 . A G 1882.73 . AB=0;AO=71;DP=74;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2260100 . C T 2132.36 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2260525 . C T 1400.93 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2264782 . C A 1621.9 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 2265059 . T G 2341.23 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2265150 . C G 2352.01 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 2267015 . T C 2047.44 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2268433 . C A 2886.11 . AB=0;AO=109;DP=110;QA=3270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:1:30:109:3270:-291.558,-30.1137,0 +NC_000962.3 2268627 . G C 1063.72 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2269545 . G A 1856 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2269780 . T C 1451.37 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2270102 . A G 1392.71 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 2271498 . G A 1912.16 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2273733 . TC T 2291.23 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 2282787 . C T 2098.06 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2283191 . G C 1753.29 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2285251 . C A 2178.13 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 2287121 . A G 2396.05 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2288085 . G C 2422.51 . AB=0;AO=91;DP=94;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2294007 . T C 2853.66 . AB=0;AO=107;DP=108;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 2296042 . G C 1777.93 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2296181 . A G 1071.93 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 2298194 . G T 1516.05 . AB=0;AO=60;DP=63;QA=1800;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:3:90:60:1800:-153.878,-10.5661,0 +NC_000962.3 2300237 . A G 1319.78 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 2300546 . A T 1565.81 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2300552 . TGGA GGGG 1482.29 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.273,-16.8577,0 +NC_000962.3 2302033 . G A 1748.68 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2311099 . C G 1269.52 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2314689 . C A 1846.62 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2315386 . C A 1675.68 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 2316123 . C A 2340.97 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2318725 . C T 1315.03 . AB=0;AO=50;DP=52;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:50:1500:-134.952,-15.0515,0 +NC_000962.3 2320320 . C T 1668.22 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2321975 . T C 1776.9 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2328543 . T C 1885.98 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2329533 . A G 1162.77 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 2330097 . T C 2204.07 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2331620 . A C 1392.12 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2331789 . G T 2097.45 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 2334007 . A G 1861.45 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2335075 . A G 2500.99 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2335494 . A G 1995.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2337179 . C T 2395.43 . AB=0;AO=91;DP=93;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:91:2730:-242.965,-24.9952,0 +NC_000962.3 2338194 . A AC 251.973 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 2338810 . TA CG 1873.24 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2339255 . A G 2256.13 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2339835 . C T 673.771 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 2340621 . C G 617.711 . AB=0;AO=25;DP=26;QA=750;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:1:30:25:750:-64.7906,-4.82721,0 +NC_000962.3 2341636 . C G 2207.27 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2342649 . A AGGCGTACACAC 1549.7 . AB=0;AO=59;DP=62;QA=1770;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2344246 . G C 2396.31 . AB=0;AO=90;DP=93;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2344499 . T G 2698.22 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 2345037 . C A 1566.13 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 2346318 . G A 1882.82 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2347597 . C G 2068.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2348446 . C G 2039.32 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2354791 . A G 1727.2 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2357268 . TGCC T 490.306 . AB=0;AO=19;DP=22;QA=570;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 2358029 . T TG 1589.81 . AB=0;AO=60;DP=64;QA=1800;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2361604 . C G 1803.96 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2362041 . C A 1731.81 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2364475 . T C 2424.18 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2368564 . TA T 2555.99 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.103,-28.8989,0 +NC_000962.3 2369186 . G C 1800.41 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2369326 . C G 1669.04 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2376135 . A G 2499.47 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2381572 . AC A 2070.47 . AB=0;AO=78;DP=84;QA=2340;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2382776 . A C 2767.91 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 2386389 . G A 2189 . AB=0;AO=83;DP=86;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 2387733 . T C 274.623 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 2388641 . G A 1836.55 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 2393691 . G T 1959.6 . AB=0;AO=74;DP=77;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2399734 . G A 1827.34 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2406842 . AC A 2094.63 . AB=0;AO=79;DP=83;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 2411496 . G A 1874.77 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2413246 . C A 1221.9 . AB=0;AO=47;DP=48;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:1:30:47:1410:-124.182,-11.4499,0 +NC_000962.3 2415656 . G C 1644.53 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2421816 . A G 1399.62 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2421975 . G GGGAA 1041.23 . AB=0;AO=40;DP=46;QA=1200;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 2423819 . CCCA GCCG 302.131 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 2424925 . A G 1910.15 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2425471 . T C 2181.53 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2440926 . G T 2021.93 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2442468 . C T 1737.6 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2448458 . C T 1995.6 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2451700 . A C 1539.03 . AB=0;AO=59;DP=62;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:59:1770:-156.577,-15.3622,0 +NC_000962.3 2462871 . G A 1674.88 . AB=0;AO=64;DP=66;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:64:1920:-170.075,-16.8673,0 +NC_000962.3 2470591 . A C 1342.32 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2483420 . G T 2162.95 . AB=0;AO=83;DP=85;QA=2490;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:2:60:83:2490:-218.668,-19.8884,0 +NC_000962.3 2491597 . G T 1864.04 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 2499726 . G A 1659.64 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2505085 . G A 2186.31 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 2509140 . G C 970.756 . AB=0;AO=37;DP=38;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2509722 . A G 2694.63 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 2510350 . C G 2507.05 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2516567 . G C 1820.8 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2521342 . T C 1247.84 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2521428 . A G 1609.46 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2522955 . T G 1933.72 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2523205 . G GCGC 989.018 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 2525722 . CG C 1909.77 . AB=0;AO=72;DP=77;QA=2160;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2526974 . T C 2100.73 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 2529680 . A G 2260.21 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2531742 . A G 2286.95 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2532616 . G A 2063.11 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2533377 . T C 2204.77 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2534562 . GGA G 2500.61 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2536599 . C T 1251.67 . AB=0;AO=49;DP=51;QA=1470;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:2:60:49:1470:-126.882,-9.65335,0 +NC_000962.3 2536628 . G GA 1077.4 . AB=0;AO=41;DP=45;QA=1230;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 2536892 . T C 1078.64 . AB=0;AO=41;DP=43;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 2543395 . T C 3139.99 . AB=0;AO=119;DP=124;QA=3570;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:124:2:60:119:3570:-315.854,-31.0254,0 +NC_000962.3 2546684 . C A 2113.11 . AB=0;AO=81;DP=83;QA=2430;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:2:60:81:2430:-213.269,-19.2863,0 +NC_000962.3 2548700 . C T 2506.32 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2551576 . CT GC 1400.7 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 2562644 . G T 1935.22 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 2564368 . G GC 2660.08 . AB=0;AO=100;DP=104;QA=3000;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 2566768 . A GC 1962.86 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2573756 . C A 2670.41 . AB=0;AO=101;DP=102;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:101:3030:-269.961,-27.7055,0 +NC_000962.3 2578626 . A G 2130.73 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2581052 . G A 2415.03 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2586076 . C G 2053.17 . AB=0;AO=78;DP=80;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:78:2340:-207.87,-21.0818,0 +NC_000962.3 2586127 . A G 1976.65 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2589036 . G C 1697.45 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2589216 . G C 1939.63 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2598400 . A G 2046.89 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2600260 . A G 2319.32 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2601576 . T G 2458.06 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 2601760 . G A 2734.53 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 2608117 . C A 1746.13 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2612256 . G T 1374.78 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 2612632 . C A 1963.07 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2614909 . GC G 1982.45 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2615127 . A G 2801.12 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2619271 . T C 1815.76 . AB=0;AO=70;DP=72;QA=2100;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:70:2100:-183.573,-15.975,0 +NC_000962.3 2625924 . T C 1534.15 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2626004 . G A 1715.8 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2626011 . G A 1773.05 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2626018 . T C 1716.06 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2626513 . TT AG 790.326 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 2627618 . C A 2269.6 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 2627946 . A G 2125.79 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2630740 . T C 2020.8 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2631371 . C T 2256.75 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2632341 . C CA 2007.16 . AB=0;AO=77;DP=84;QA=2310;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:84:2:60:77:2310:-202.471,-18.3822,0 +NC_000962.3 2634282 . T G 1958.17 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2637162 . C T 1223.58 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2637541 . C T 1588.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2642383 . C T 2317.54 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2647905 . G A 1619.12 . AB=0;AO=62;DP=65;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 2656225 . A G 2287.76 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2660319 . C G 2150.33 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2663795 . G A 1982.32 . AB=0;AO=76;DP=79;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:76:2280:-199.771,-18.0811,0 +NC_000962.3 2673818 . C G 1392.8 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2680658 . T G 2424.38 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2689642 . G T 2118.33 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 2692100 . C T 2420.62 . AB=0;AO=91;DP=95;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2695378 . C G 1996.43 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 2696402 . G A 2353.84 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2697489 . C T 1722.88 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 2698250 . T A 2184.68 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2703902 . C CG 989.91 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 2704884 . A ACAGCGACCATATCGCCGAGCT 1560.78 . AB=0;AO=59;DP=68;QA=1770;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2706663 . G T 2144.98 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2711722 . T G 1913.01 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2713795 . C T 1288.32 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2718680 . G A 2178.79 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2718852 . T G 2339.4 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2721562 . C G 2663.42 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 2723506 . T C 2507.24 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2724180 . TCACGATCGGGTCTCCTCTAG T 1354.8 . AB=0;AO=55;DP=58;QA=1650;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:3:90:55:1650:-140.38,-9.06095,0 +NC_000962.3 2729058 . A C 1746.12 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2734074 . T C 1321.07 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2734481 . TA T 2536.46 . AB=0;AO=96;DP=103;QA=2880;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:96:2880:-256.463,-26.5003,0 +NC_000962.3 2737572 . C A 1577.54 . AB=0;AO=62;DP=65;QA=1860;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:3:90:62:1860:-159.277,-11.1682,0 +NC_000962.3 2738274 . A C 2341.22 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2740693 . T C 1243.59 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2741209 . G A 2611.82 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 2751804 . C T 1225.67 . AB=0;AO=48;DP=50;QA=1440;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:48:1440:-126.882,-12.0509,0 +NC_000962.3 2752122 . G C 1340.61 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2752698 . C A 2187.55 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 2760152 . A G 1722.18 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2774555 . T C 1832.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2775361 . C T 2007.85 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2779136 . T C 2478.1 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 2781935 . C T 1539.18 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2786952 . A G 2295.78 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 2789798 . G T 1921.01 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 2791098 . C T 1720.51 . AB=0;AO=65;DP=67;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 2793810 . C A 2389.52 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2794071 . G A 2353.41 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2800087 . G A 1913.25 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2802041 . C T 378.64 . AB=0;AO=16;DP=17;QA=480;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:1:30:16:480:-40.4941,-2.11794,0 +NC_000962.3 2807486 . C A 3505.57 . AB=0;AO=132;DP=132;QA=3960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:132:0:0:132:3960:-356.648,-39.736,0 +NC_000962.3 2808452 . T C 1979.01 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2809621 . T C 2069.05 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2809633 . A C 2032.7 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2817502 . A C 2284.96 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2818837 . A G 2421.53 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2821342 . C T 2231.53 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 2825466 . G A 2591.46 . AB=0;AO=98;DP=100;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 2825581 . T G 2583.26 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 2827984 . G T 1241.04 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2828019 . T C 1379.04 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2829779 . T C 749.938 . AB=0;AO=32;DP=34;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:32:960:-86.3875,-9.63296,0 +NC_000962.3 2830525 . C A 1805.48 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2833329 . G A 1961.46 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2835984 . T C 1995.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2841022 . A G 1401.9 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2847281 . A G 2022.83 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2850631 . T C 1854.08 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2851162 . AACATT C 1885.25 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2855259 . A G 3046.34 . AB=0;AO=115;DP=117;QA=3450;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:1:30:115:3450:-307.756,-32.2199,0 +NC_000962.3 2855376 . A C 2954.17 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 2865760 . A G 1456.08 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2865882 . T C 1703.71 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2866607 . G A 695.801 . AB=0;AO=28;DP=31;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 2866647 . G A 632.863 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 2866671 . G A 464.309 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 2866677 . A C 438.385 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 2867207 . C G 1073.4 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 2867230 . GC AT 822.014 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2867236 . ACCCC GCCCT 822.014 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2867245 . A C 822.014 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2867251 . CGCA GGCG 796.188 . AB=0;AO=34;DP=35;QA=1020;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:34:1020:-91.7867,-10.235,0 +NC_000962.3 2867263 . G A 822.014 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 2867298 . C A 607.854 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 2867347 . A G 265.43 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 2867552 . A G 272.474 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 2867575 . T C 390.26 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 2867594 . G A 560.015 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 2867756 . T C 1978.95 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2867880 . TA T 2162.96 . AB=0;AO=82;DP=85;QA=2460;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2880702 . G C 2579.73 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 2881597 . AG A 2636.39 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.232,-29.802,0 +NC_000962.3 2881974 . G A 2323.86 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2884068 . A C 2620.28 . AB=0;AO=99;DP=100;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:99:2970:-264.562,-27.1034,0 +NC_000962.3 2886570 . A G 3170.4 . AB=0;AO=119;DP=120;QA=3570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:119:3570:-321.254,-35.8226,0 +NC_000962.3 2888201 . T C 1506.01 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2889633 . T C 1643.98 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2891267 . C T 2473.62 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 2891728 . A G 2261.82 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2894208 . G A 1724.56 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2898522 . T C 2236.99 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2903439 . G A 2581.87 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 2910461 . G T 1747.02 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2911293 . C G 1985.95 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2912294 . T G 1528.48 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 2922846 . CCA TCT 534.771 . AB=0;AO=21;DP=22;QA=630;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:21:630:-56.6918,-6.32163,0 +NC_000962.3 2923391 . T C 1672.85 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2925962 . T C 2665.67 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 2927939 . T C 1645.64 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 2939373 . G C 2047.88 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2939657 . T C 2070.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2948230 . G A 1911.68 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2954439 . T C 2610.4 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 2955957 . A C 2343.97 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2964355 . G C 1877.73 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2969197 . A G 2258.99 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2974933 . A G 806.056 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 2975227 . T G 2250.22 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2980861 . A G 2043.31 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2983095 . A G 435.385 . AB=0;AO=19;DP=20;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 2983873 . A G 1805.48 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2984740 . A G 1453.7 . AB=0;AO=55;DP=61;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2988630 . C G 1911.33 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2994187 . T C 1855.05 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3003115 . C G 2262.43 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3005185 . G T 2258.17 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3009692 . A G 2631.47 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 3009834 . A G 2746.02 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3010420 . A G 1992.15 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3010993 . C T 1699.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3017465 . T C 2746.7 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3021892 . GTTCGACGAC G 1721.56 . AB=0;AO=65;DP=68;QA=1950;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3024021 . C A 2018.3 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3024343 . G A 1692.29 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3027798 . T C 1800.41 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3031168 . A G 1964.25 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3033189 . G A 1555.83 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3036826 . C T 1745.61 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3037377 . T C 1909.91 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3041871 . G T 1774.16 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 3048912 . C G 2044.3 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3054081 . A G 1589.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3054321 . A G 663.976 . AB=0;AO=27;DP=34;QA=810;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:1:30:27:810:-70.1899,-5.72923,0 +NC_000962.3 3054533 . C G 279.744 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 3061703 . G A 1228.56 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3069167 . A G 1900.66 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3078178 . C T 2035.48 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3078579 . G A 1882.01 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 3079877 . A G 2049.44 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3080795 . A G 2583.29 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 3086788 . T C 2743.69 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3103682 . T C 2226.67 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3104189 . A G 2745.69 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3110140 . G T 2296.97 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 3111476 . C T 1717.68 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3112877 . G A 1431.02 . AB=0;AO=55;DP=57;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 3113872 . A T 2312.16 . AB=0;AO=87;DP=89;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3115384 . G C 2392.59 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3118000 . A G 1994.91 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3131469 . T TTGTCGGCGA 1503.51 . AB=0;AO=62;DP=72;QA=1860;QR=180;RO=6;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:6:180:62:1860:-151.178,-4.27238,0 +NC_000962.3 3133054 . CG GC 965.684 . AB=0;AO=37;DP=39;QA=1110;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 3133536 . T C 2664.98 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3135606 . A G 2234.32 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3135912 . G C 1156.57 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3135950 . CG GC 1077.81 . AB=0;AO=41;DP=42;QA=1230;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 3137058 . G A 1884.52 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3137736 . G T 1168.79 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 3144623 . C T 1807.5 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3156201 . C CG 1316.35 . AB=0;AO=50;DP=56;QA=1500;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 3162805 . C G 418.005 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 3165636 . G A 2633.01 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 3174496 . A G 1807 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3174692 . AC A 2175.41 . AB=0;AO=82;DP=85;QA=2460;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:82:2460:-221.329,-24.6845,0 +NC_000962.3 3175310 . C G 1825.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3177452 . C A 1180.35 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 3177884 . C A 1777.93 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3178530 . C G 2224.24 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3180988 . C A 2053.98 . AB=0;AO=79;DP=81;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:2:60:79:2370:-207.87,-18.6843,0 +NC_000962.3 3186860 . T G 2284.56 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3189242 . A G 2554.79 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 3190145 . TC T 1634.3 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3194241 . C CG 1481.64 . AB=0;AO=56;DP=59;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 3200282 . C T 1885.01 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3209156 . G A 1748.6 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3214869 . A G 1560.2 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3215622 . CG C 1663 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3217905 . G A 1801.97 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3220877 . G T 2101.14 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 3222450 . G A 2046 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3226181 . A C 1866.7 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 3228143 . G T 1746.68 . AB=0;AO=68;DP=71;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:2:60:68:2040:-178.174,-15.6729,0 +NC_000962.3 3238119 . CGTG C 1938.99 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3247316 . C G 1835.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3247851 . GCCCGG ACTCGC 1457.01 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3247865 . GCAAA TAGGG 1428.48 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3247874 . GTTT ATTC 1448.87 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3247883 . T C 1415.25 . AB=0;AO=54;DP=55;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 3248074 . GC AT 1522.98 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3249025 . T G 1931.2 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3253552 . G A 2283.16 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3256456 . G A 2372.2 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3256494 . A G 2368.23 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3256806 . G T 2102.86 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3266030 . A G 867.015 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0867,-10.235,0 +NC_000962.3 3269581 . A G 1696.69 . AB=0;AO=65;DP=67;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 3270784 . A G 2223.35 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3276703 . T G 2424.94 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3284640 . A G 2238.42 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3284855 . C T 1907.02 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3296371 . G GCCGCGGC 925.636 . AB=0;AO=36;DP=41;QA=1080;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:41:1:30:36:1080:-94.4863,-8.4385,0 +NC_000962.3 3296843 . A G 1508.72 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3297340 . G A 1482.28 . AB=0;AO=57;DP=59;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 3299700 . C G 2088.81 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3304966 . G A 2718.39 . AB=0;AO=102;DP=104;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 3308606 . G A 2854.03 . AB=0;AO=108;DP=111;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:108:3240:-288.858,-30.1127,0 +NC_000962.3 3310367 . G A 2557.07 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3310427 . T C 2121.91 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3310626 . T C 1798.42 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3314412 . A G 1724.3 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3316955 . A C 1964.14 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3326554 . A C 2658.06 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3331361 . ACG A 2139.55 . AB=0;AO=81;DP=85;QA=2430;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 3335708 . G C 1587.67 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3336620 . TA T 221.445 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 3336646 . T A 300.793 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3336825 . T C 680.634 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 3338603 . G C 1293.13 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3350898 . T C 1692.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3352932 . C G 2181.47 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3358235 . A T 1937.34 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3363338 . A G 1717.03 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3367765 . G A 1912.77 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3375165 . A C 1569.85 . AB=0;AO=60;DP=62;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 3378095 . A G 575.335 . AB=0;AO=25;DP=27;QA=750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:25:750:-67.4902,-7.52575,0 +NC_000962.3 3379708 . GAGCG CAGCC 681.404 . AB=0;AO=28;DP=29;QA=840;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 3379718 . T C 681.404 . AB=0;AO=28;DP=29;QA=840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:28:840:-75.5891,-8.42884,0 +NC_000962.3 3379726 . CCCCGGCCAAC ACCCCGTCACA 726.65 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3379742 . T C 888.271 . AB=0;AO=35;DP=35;QA=1050;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1050:-94.7863,-10.5361,0 +NC_000962.3 3379751 . A C 945.638 . AB=0;AO=38;DP=39;QA=1140;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:1:30:38:1140:-99.8856,-8.7406,0 +NC_000962.3 3379757 . A C 1047.66 . AB=0;AO=41;DP=41;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1230:-110.984,-12.3422,0 +NC_000962.3 3379763 . G A 1127.9 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3379784 . CCCCC ACCCG 1327.83 . AB=0;AO=52;DP=54;QA=1560;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3380534 . A G 466.44 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 3399316 . G A 1499.59 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3401871 . A G 2136.74 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3402816 . C T 1961.46 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3404376 . C G 2418.12 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3408150 . T C 2559.22 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3412611 . T C 2654.25 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3415180 . ACACCTAGGGGGTGG A 1413.42 . AB=0;AO=57;DP=62;QA=1710;QR=120;RO=4;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:62:4:120:57:1710:-143.079,-7.56439,0 +NC_000962.3 3416932 . G A 1699.06 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3420825 . A G 2157.36 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3425854 . C T 1382.55 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 3428917 . C A 2842.5 . AB=0;AO=108;DP=110;QA=3240;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:2:60:108:3240:-286.159,-27.4141,0 +NC_000962.3 3440464 . TGTGG GGTGC 1422.11 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 3446699 . C G 1887.91 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3447293 . T G 2668.43 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3450725 . T C 2232.14 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3454263 . C G 2192.04 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 3455686 . G C 2130.22 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 3456666 . A G 1051.53 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3461527 . C G 1725.09 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3462135 . G C 1670.13 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3466919 . C G 2126.21 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3467465 . C G 2772.71 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 3473996 . G GA 2478.1 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3477942 . A G 2317.74 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3480474 . G A 2974.58 . AB=0;AO=112;DP=113;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 3480789 . T C 2138.92 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 3482717 . A G 1608.87 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3484126 . G A 889.62 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 3486977 . A G 2207.48 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3487108 . C T 2641.42 . AB=0;AO=100;DP=103;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:100:3000:-267.261,-27.7044,0 +NC_000962.3 3498198 . C T 1885.98 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3500149 . G A 2127.93 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3500243 . G C 1992.61 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3503895 . C T 1369.45 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3508970 . A G 2393.06 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 3509626 . C A 2345.92 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3510120 . T G 1864.04 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 3518167 . A G 1376.41 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3518555 . A G 1614.92 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3529067 . G C 1905.68 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3530955 . C G 2137.03 . AB=0;AO=81;DP=84;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 3542049 . G A 2503.87 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 3542219 . G A 2533.47 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3550347 . C T 2421.38 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 3550789 . C G 2416.19 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3556275 . A G 2228.86 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3560112 . ACCCGTGAGCAGACGCAGAAGTCCCCGATTTCCGGTGAAATCGGCGACTTCTGCGTCTGCTCGCCGCGAGCGC A 838.609 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3571828 . G C 2096.37 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3576231 . T C 1612 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3577497 . C T 1936.8 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3580636 . CT C 1399.23 . AB=0;AO=53;DP=57;QA=1590;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 3581414 . A G 2513.55 . AB=0;AO=96;DP=99;QA=2880;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:2:60:96:2880:-253.763,-24.1017,0 +NC_000962.3 3587446 . G A 2321.44 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 3590686 . G GC 1562.81 . AB=0;AO=59;DP=63;QA=1770;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3591063 . T C 2611.81 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3597249 . C G 1486.59 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3600576 . C T 1960.71 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3604821 . G C 1647.8 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 3610391 . A AC 2181.47 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3612813 . T C 1907.62 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3614982 . T C 2257.81 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3621423 . A G 2093.09 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3622441 . A C 2043.4 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3625065 . T G 2309.79 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3626562 . G A 1804 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3628520 . G A 2297.76 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 3638093 . G A 1625.22 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 3643985 . A C 1795.24 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3653988 . G A 1740.87 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3664457 . C A 2481.88 . AB=0;AO=94;DP=95;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:94:2820:-251.064,-25.5983,0 +NC_000962.3 3665753 . G A 1964.25 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3669766 . T C 2121.04 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3670040 . C T 2180.69 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3674157 . T A 1290.48 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3675504 . G T 2322.22 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 3678249 . A C 1941.28 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3680932 . G A 1088.21 . AB=0;AO=42;DP=43;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:42:1260:-113.384,-12.6433,0 +NC_000962.3 3681548 . A C 2095.42 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3689523 . G T 1569.56 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 3690016 . A G 1930.36 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3693681 . A C 1479.13 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3704596 . G C 2476.99 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3704770 . A G 2477.92 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3714211 . G T 2405.49 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3714757 . A C 2455.84 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 3718357 . C T 2047.33 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3719941 . G A 1210.72 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 3721806 . G C 2318.13 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3730466 . A G 1303.86 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3730519 . C G 728.392 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 3730616 . G A 226.493 . AB=0;AO=10;DP=12;QA=300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:1:30:10:300:-24.2965,-0.61172,0 +NC_000962.3 3730642 . G A 310.119 . AB=0;AO=13;DP=15;QA=390;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:1:30:13:390:-32.3953,-1.51481,0 +NC_000962.3 3732344 . G A 589.471 . AB=0;AO=26;DP=27;QA=780;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:1:30:26:780:-67.4902,-5.12824,0 +NC_000962.3 3732538 . G A 540.534 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 3732624 . A G 760.099 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 3735802 . C G 1054.09 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3736024 . A G 658.029 . AB=0;AO=26;DP=27;QA=780;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:1:30:26:780:-67.4902,-5.12824,0 +NC_000962.3 3736628 . T G 1239.23 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3738416 . TG T 300.503 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3738516 . C CTGCCACCGCTGCCGCCGCTGCCGCCGT 436.175 . AB=0;AO=18;DP=21;QA=540;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:21:1:30:18:540:-45.8934,-3.01996,0 +NC_000962.3 3741287 . CTT GGC 1081.8 . AB=0;AO=42;DP=44;QA=1260;QR=30;RO=1;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:44:1:30:42:1260:-110.684,-10.2447,0 +NC_000962.3 3741572 . G A 565.735 . AB=0;AO=22;DP=24;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 3743656 . G A 1593.1 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3743899 . G A 1558.16 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3746409 . A G 1526.39 . AB=0;AO=58;DP=61;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3750177 . AA TC 1446.91 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 3750185 . CGAC GGTG 1391.75 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 3750193 . G A 1476.05 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3750205 . CGACAT TGACGG 1499.28 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3750407 . G C 1715.97 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3750417 . AAGCT TAGCC 1554.07 . AB=0;AO=59;DP=63;QA=1770;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3752207 . A G 2089.99 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3753116 . C T 1126.56 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 3753164 . T G 1516.76 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3754508 . G C 1617.07 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3761016 . GC G 1332.01 . AB=0;AO=51;DP=56;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:51:1530:-137.647,-15.3525,0 +NC_000962.3 3761191 . A G 1911.2 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3761737 . A G 2339.45 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3762013 . A C 2512.48 . AB=0;AO=96;DP=101;QA=2880;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:96:2880:-253.763,-24.1017,0 +NC_000962.3 3763504 . C A 2209.55 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3775409 . T C 994.881 . AB=0;AO=38;DP=39;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 3775441 . A C 1017.45 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 3778011 . GG AT 1930.48 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3778396 . C T 2253.27 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3779671 . C CGGCAACGGT 379.254 . AB=0;AO=15;DP=20;QA=450;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:15:450:-40.4862,-4.51545,0 +NC_000962.3 3792561 . C T 2749.2 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3794867 . C CCA 1088.51 . AB=0;AO=43;DP=46;QA=1290;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3798095 . A C 1598.41 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3798596 . A G 3079.74 . AB=0;AO=117;DP=120;QA=3510;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:2:60:117:3510:-310.455,-30.4234,0 +NC_000962.3 3802140 . ACGGCGGGGCCGGCGGCGG A 333.764 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 3804299 . G A 1756.97 . AB=0;AO=67;DP=68;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:67:2010:-178.174,-17.4705,0 +NC_000962.3 3811672 . GTAA TTAG 2069.81 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 3813243 . G A 1848.85 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3815477 . G T 2533.47 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3817117 . C A 2235.42 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3821845 . G T 2357.02 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3823159 . A T 1904.63 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3826501 . C T 2498.23 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3826684 . C T 2312.17 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3829770 . T C 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3830349 . C T 1507.52 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3830695 . A G 1356.76 . AB=0;AO=52;DP=53;QA=1560;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:52:1560:-137.68,-12.955,0 +NC_000962.3 3834486 . T C 2532.02 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3838871 . A G 1482.5 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 3841790 . A G 2854.52 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 3842463 . TA T 2735.29 . AB=0;AO=104;DP=109;QA=3120;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:104:3120:-280.736,-31.3071,0 +NC_000962.3 3842620 . A G 2206.35 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 3842625 . A G 2161.83 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 3843407 . CG C 1928.81 . AB=0;AO=73;DP=77;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3844756 . GC G 606.793 . AB=0;AO=26;DP=29;QA=780;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:26:780:-70.1899,-7.82678,0 +NC_000962.3 3844992 . T A 2366.1 . AB=0;AO=89;DP=92;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3845695 . C T 1590.47 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 3846734 . G T 777.531 . AB=0;AO=32;DP=37;QA=960;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:1:30:32:960:-83.6879,-7.23438,0 +NC_000962.3 3846791 . A G 559.03 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 3847215 . T C 1686.01 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3847221 . T C 1721.11 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3847235 . CTGC TTTT 1723.41 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3847744 . C GA 1826.09 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3851887 . AT CC 1023.17 . AB=0;AO=39;DP=40;QA=1170;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:39:1170:-105.285,-11.7402,0 +NC_000962.3 3859893 . C T 1638.96 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3862472 . GA G 2017.38 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3863138 . G A 1900.42 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3863681 . C G 1669.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3864995 . T C 1619.32 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3870010 . A G 1914.68 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3871246 . T C 992.35 . AB=0;AO=38;DP=40;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:38:1140:-102.557,-11.4391,0 +NC_000962.3 3874722 . AT A 2276.32 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3877421 . A G 2477.18 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3883178 . A C 2661.87 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3883796 . GG TA 274.389 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3884906 . A G 1831.12 . AB=0;AO=70;DP=72;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:70:2100:-186.273,-18.6735,0 +NC_000962.3 3885886 . T C 2800.63 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 3888058 . C T 2126.16 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 3892671 . A G 2424.75 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3893480 . G A 2100.29 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3894732 . A G 1645.36 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3895585 . C T 1489.86 . AB=0;AO=57;DP=59;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 3895727 . C A 2044.97 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3896340 . T G 2297.76 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3898408 . A G 2540.23 . AB=0;AO=96;DP=97;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:96:2880:-256.463,-26.2003,0 +NC_000962.3 3902318 . A AT 2310.38 . AB=0;AO=87;DP=92;QA=2610;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3906311 . G A 1821.84 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3908465 . A G 2070.15 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3909235 . G C 2745.51 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3916386 . G T 2207.59 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 3929478 . CG C 1107.65 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 3934542 . T G 509.126 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 3934699 . G A 594.273 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 3934733 . GG CA 456.115 . AB=0;AO=18;DP=19;QA=540;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 3942481 . C G 702.258 . AB=0;AO=27;DP=28;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:0:0:27:810:-72.8895,-8.12781,0 +NC_000962.3 3942640 . T C 861.263 . AB=0;AO=33;DP=34;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 3943019 . C G 333.08 . AB=0;AO=15;DP=16;QA=450;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:1:30:15:450:-37.7945,-1.81691,0 +NC_000962.3 3943744 . CCGGCAACGG C 400.282 . AB=0;AO=16;DP=17;QA=480;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:16:480:-43.0875,-4.81648,0 +NC_000962.3 3944465 . CG C 294.94 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3945046 . C G 1524.55 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3952308 . C A 2237.39 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 3952800 . G A 2177.73 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 3958403 . A G 2942.41 . AB=0;AO=111;DP=112;QA=3330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:1:30:111:3330:-296.957,-30.7158,0 +NC_000962.3 3959418 . C T 2411.85 . AB=0;AO=93;DP=96;QA=2790;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:3:90:93:2790:-242.965,-20.5001,0 +NC_000962.3 3959730 . T C 2352.01 . AB=0;AO=89;DP=91;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 3962187 . G A 1366.81 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3964518 . G A 2878.12 . AB=0;AO=108;DP=109;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:108:3240:-291.558,-32.5112,0 +NC_000962.3 3968006 . A C 2130.85 . AB=0;AO=83;DP=86;QA=2490;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:3:90:83:2490:-215.969,-17.4898,0 +NC_000962.3 3970594 . C G 1321.07 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 3976595 . G T 2210.59 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3979990 . C G 1937.75 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3981983 . G A 1986.84 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 3984321 . G A 2746.69 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3987370 . CG C 1450.29 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.45,-16.5567,0 +NC_000962.3 3993058 . G A 2077.31 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 3994900 . A G 2388.05 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 4001622 . T C 2364.24 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 4005114 . G C 1155.12 . AB=0;AO=44;DP=47;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 4005607 . T C 2205.51 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4008747 . A G 1907.03 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4013010 . G A 1966.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 4022388 . G A 1959.6 . AB=0;AO=74;DP=78;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4024273 . T C 2253.75 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 4026899 . G A 1447.75 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 4028752 . A G 2211 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4032218 . G A 935.522 . AB=0;AO=36;DP=38;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:36:1080:-97.1859,-10.8371,0 +NC_000962.3 4033577 . A G 1346.7 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 4034827 . C T 1777.16 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4037283 . T G 431.118 . AB=0;AO=17;DP=18;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:17:510:-45.8934,-5.11751,0 +NC_000962.3 4041581 . C T 2485.17 . AB=0;AO=94;DP=96;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 4050811 . G A 1410.79 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4053050 . A G 451.052 . AB=0;AO=18;DP=20;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 4055801 . G A 2495.24 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 4056416 . C A 2565.15 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 4056693 . G T 2718.34 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 4059143 . A C 1610.67 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 4059904 . A G 2903.08 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 4060100 . G A 1397.17 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4060201 . G A 371.611 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 4060210 . T A 298.739 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 4060230 . G A 276.556 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 4060588 . T C 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4061586 . ACGC A 1269.52 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 4069292 . G A 2535.02 . AB=0;AO=96;DP=97;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:96:2880:-256.463,-26.2003,0 +NC_000962.3 4075422 . T C 2097.41 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4085876 . G A 2394.59 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 4088428 . T C 2004.27 . AB=0;AO=77;DP=79;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:77:2310:-202.471,-18.0822,0 +NC_000962.3 4089058 . T C 1744.68 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4095001 . CG C 1610.3 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4095295 . T C 1646.69 . AB=0;AO=63;DP=65;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:63:1890:-167.376,-16.5663,0 +NC_000962.3 4096262 . G T 1719.97 . AB=0;AO=65;DP=68;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 4100975 . T C 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4104721 . C T 2961.97 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 4107074 . T C 1917.25 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 4111303 . G C 1505.74 . AB=0;AO=58;DP=61;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 4112429 . T C 1843.48 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 4114749 . C A 1435.73 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 4115890 . G C 2527.28 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 4116610 . G A 2282.75 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4120390 . G C 2801.55 . AB=0;AO=106;DP=107;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:1:30:106:3180:-283.459,-29.2106,0 +NC_000962.3 4122287 . G T 2206.76 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4123770 . G A 808.213 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 4124349 . GCC G 2092.42 . AB=0;AO=79;DP=83;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4133316 . A T 1428.48 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4137829 . C T 2783.13 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 4145737 . A G 2211.62 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4151855 . A G 1509.33 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4156099 . C A 2480.32 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 4156503 . C T 2036.67 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4158493 . C T 2206.97 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4159195 . T C 1904.03 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4160371 . C A 1816.93 . AB=0;AO=74;DP=80;QA=2220;QR=180;RO=6;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:6:180:74:2220:-183.573,-7.58478,0 +NC_000962.3 4162339 . A G 1750.95 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4166441 . G A 1615.1 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4167656 . A G 2067.81 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 4169852 . G T 1640.93 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4170739 . G C 1944.66 . AB=0;AO=74;DP=76;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:74:2220:-197.072,-19.8776,0 +NC_000962.3 4170964 . G GA 2312.76 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 4174131 . G C 2253.23 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4179089 . C T 2583.26 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 4179832 . G C 1469.34 . AB=0;AO=56;DP=59;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4180839 . G C 2242.68 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 4182387 . G C 2475.13 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 4182695 . G A 2040.95 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4186295 . A C 2078.44 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4186678 . G A 2366.2 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 4187485 . T C 2076.34 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 4187817 . A G 2368.95 . AB=0;AO=90;DP=92;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 4189210 . G T 1185.69 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 4194501 . G A 1724.46 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 4197138 . C CT 1910.49 . AB=0;AO=72;DP=76;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4198611 . CG C 2394.01 . AB=0;AO=90;DP=95;QA=2700;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 4204168 . T C 2853.12 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 4204441 . A G 2851.08 . AB=0;AO=107;DP=108;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 4205120 . A G 2451.4 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4205325 . A G 2504.6 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 4210274 . A G 2177.11 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4212832 . GACC G 2581.28 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.803,-29.1999,0 +NC_000962.3 4214988 . G A 2154.17 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 4215484 . G C 2206.03 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4217557 . A G 2318.53 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 4218416 . C A 1864.28 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 4218941 . G A 2415.63 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 4219219 . G A 1893.48 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4221070 . AC A 2015.53 . AB=0;AO=76;DP=79;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 4221423 . C T 2047.44 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4221490 . C G 1907.38 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4222073 . A G 2148.19 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 4222882 . A G 2337.1 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 4223172 . T C 1258.75 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 4229167 . T C 1808.01 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4231859 . CGCGGTCTGTGCGCCGGGCGCACGCACCGAATTCGAGCTATTAGCGGCCGCGGCAAGGGACGCATTCGGCCTGGACGTCCACCCAGCGGT C 626.43 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 4234960 . A C 1804.5 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 4236237 . C T 1434.48 . AB=0;AO=55;DP=57;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:55:1650:-145.779,-14.1581,0 +NC_000962.3 4242643 . C T 2209.14 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4243460 . C T 1659.18 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4251297 . G C 1698.79 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4252066 . T C 2040.84 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 4254290 . T G 1640.09 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4254431 . G A 2063.16 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 4255922 . A G 2273.07 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4256210 . G T 1535.63 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 4257220 . A G 1695.29 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4258106 . G A 1776.73 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 4262388 . C T 2293.2 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 4264381 . G GC 1478.89 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 4267647 . T C 2584.16 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 4280708 . G A 1642.81 . AB=0;AO=63;DP=65;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:63:1890:-167.376,-16.5663,0 +NC_000962.3 4284429 . G A 2771.72 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 4287164 . A G 1777.93 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4290135 . C T 2199.77 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4296015 . G A 1672.58 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4301075 . G C 2341.23 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 4302036 . T C 1049.38 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 4303498 . T TG 2483.89 . AB=0;AO=94;DP=98;QA=2820;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 4305063 . G GA 1745.08 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 4306155 . C T 2546.85 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 4307179 . G A 2822.13 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 4308395 . G A 2207.26 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 4309927 . T G 1933.1 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 4311664 . C T 1490.16 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 4313128 . C T 1567.87 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4314645 . A G 2282.52 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4314800 . G A 2034.93 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 4319985 . G C 1747.69 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 4322039 . AC A 2255.41 . AB=0;AO=86;DP=89;QA=2580;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4329782 . G A 2067.25 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 4338595 . GC G 2582.76 . AB=0;AO=97;DP=99;QA=2910;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 4338732 . G A 2635.12 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 4340028 . G C 3033.81 . AB=0;AO=114;DP=116;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:114:3420:-307.756,-34.3174,0 +NC_000962.3 4350305 . G A 2451.03 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4351039 . G T 2908.51 . AB=0;AO=109;DP=112;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 4356110 . G C 2118.46 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 4357597 . C G 1677.29 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 4357804 . T G 1828.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 4359165 . G C 1020.49 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 4359653 . C T 2764.52 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 4359828 . G A 2130.94 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4362568 . T G 1784.27 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 4366195 . T C 1695.57 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4366272 . G C 1887.43 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 4368084 . G C 2084.76 . AB=0;AO=79;DP=81;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4372353 . G C 2552.38 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 4375628 . G T 2294.99 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 4378504 . T C 3099.57 . AB=0;AO=116;DP=116;QA=3480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:116:3480:-313.455,-34.9195,0 +NC_000962.3 4379044 . CG C 1333.54 . AB=0;AO=51;DP=54;QA=1530;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 4379680 . C G 2264.26 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4382054 . T C 1780.24 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4382275 . G T 1725.09 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 4383144 . C CCGGGG 1268.28 . AB=0;AO=49;DP=54;QA=1470;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:49:1470:-129.581,-12.3519,0 +NC_000962.3 4383655 . A G 1660.02 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 4384007 . C G 2985.61 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 4386228 . T C 2930.57 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 4393178 . A G 2310.58 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 4393590 . C G 1900.65 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4397736 . C T 2880.51 . AB=0;AO=108;DP=109;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:108:3240:-291.558,-32.5112,0 +NC_000962.3 4400660 . AC A 722.605 . AB=0;AO=28;DP=29;QA=840;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:28:840:-75.531,-8.42884,0 +NC_000962.3 4404404 . G A 2215.82 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 4407588 . T C 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4407927 . T G 1559.62 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 4408923 . C T 2047.33 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 diff --git a/.github/data/variants/DRR261181.vcf b/.github/data/variants/DRR261181.vcf new file mode 100644 index 0000000..d0c99ad --- /dev/null +++ b/.github/data/variants/DRR261181.vcf @@ -0,0 +1,2215 @@ +##fileformat=VCFv4.2 +##FILTER= +##fileDate=20240221 +##source=freeBayes v1.3.6 +##reference=reference/ref.fa +##contig= +##phasing=none +##commandline="freebayes -p 2 -P 0 -C 2 -F 0.05 --min-coverage 10 --min-repeat-entropy 1.0 -q 13 -m 60 --strict-vcf -f reference/ref.fa DRR261181.bam --region NC_000962.3:0-299008" +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##bcftools_viewVersion=1.15.1+htslib-1.16 +##bcftools_viewCommand=view --include 'FMT/GT="1/1" && QUAL>=100 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0' DRR261181.raw.vcf; Date=Wed Feb 21 16:22:46 2024 +##bcftools_annotateVersion=1.15.1+htslib-1.16 +##bcftools_annotateCommand=annotate --remove ^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL; Date=Wed Feb 21 16:22:46 2024 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DRR261181 +NC_000962.3 1977 . A G 3123.61 . AB=0;AO=117;DP=118;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:118:0:0:117:3510:-315.854,-35.2205,0 +NC_000962.3 2532 . T C 1887.21 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4013 . T C 2064.5 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 6112 . G C 2194.95 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 7362 . G C 2668.43 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 7585 . G C 2745.53 . AB=0;AO=103;DP=105;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 8452 . C T 2584.87 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 9143 . T C 2721.73 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 9304 . G A 2506.15 . AB=0;AO=95;DP=97;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:95:2850:-253.763,-26.1993,0 +NC_000962.3 10986 . G A 2035.36 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 11879 . A G 2344.56 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 13100 . C T 2610.76 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 13275 . T C 2685.28 . AB=0;AO=101;DP=103;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 13298 . G C 2792.18 . AB=0;AO=105;DP=106;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 13460 . A G 2531.37 . AB=0;AO=97;DP=100;QA=2910;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:2:60:97:2910:-256.463,-24.4028,0 +NC_000962.3 13482 . G A 2651.8 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 14401 . A G 1642.04 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 14785 . T C 2637.58 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 15117 . C G 2560.3 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 15787 . C G 2471.95 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 15900 . G A 2945.81 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 21795 . G A 1386.35 . AB=0;AO=54;DP=57;QA=1620;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:54:1620:-140.38,-11.4585,0 +NC_000962.3 21819 . A C 1296.34 . AB=0;AO=50;DP=53;QA=1500;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:50:1500:-132.281,-12.6529,0 +NC_000962.3 22961 . T G 1858.94 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 23174 . C A 1890.86 . AB=0;AO=72;DP=76;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 24698 . GCCGCGTTGCTCGGGGTAA G 1422.7 . AB=0;AO=59;DP=66;QA=1770;QR=180;RO=6;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:6:180:59:1770:-143.072,-3.42082,0 +NC_000962.3 26347 . C G 2398.35 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 26959 . C G 2054.5 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 27469 . A G 2422.29 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 27996 . T C 1883.54 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 30980 . C CCGAT 2923.83 . AB=0;AO=114;DP=123;QA=3420;QR=150;RO=5;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:123:5:150:114:3420:-294.257,-22.3245,0 +NC_000962.3 34044 . T C 2242.68 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 36538 . T C 1800.91 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 37031 . C G 2209.55 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 37374 . TCG T 2476.77 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 38332 . G T 2313.37 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 39758 . A G 1752.25 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 42281 . C A 2382.26 . AB=0;AO=91;DP=94;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:91:2730:-240.265,-22.5966,0 +NC_000962.3 42967 . G C 2592.96 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 43945 . A G 2638.6 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 46691 . G A 2239.03 . AB=0;AO=85;DP=87;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 50557 . T C 2639.29 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 51949 . A G 2230.92 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 54394 . A G 2992.08 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 55069 . G C 2422.89 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 55549 . GCCGC TCCGCCGCCGCCGT 1549.7 . AB=0;AO=59;DP=71;QA=1770;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 62049 . A G 1394.43 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 64028 . C T 2601.23 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 65159 . G A 2100.89 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 65663 . C G 2591.73 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 66892 . C G 2070.6 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 68174 . T C 2691.21 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 68605 . A G 2710.82 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 69989 . G A 2423.62 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 70267 . G T 2125.37 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 70816 . A G 2341.91 . AB=0;AO=89;DP=91;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 71203 . C T 1693.68 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 71336 . G C 1149.66 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 71584 . C CCGAGCGCTGTTCTGGCGCTAATCTGACGCTAGAATAG 1377.69 . AB=0;AO=53;DP=56;QA=1590;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 74737 . T G 2546.43 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 75940 . G C 2422.1 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 79281 . C CCCACAT 1229.05 . AB=0;AO=47;DP=49;QA=1410;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:47:1410:-126.824,-14.1484,0 +NC_000962.3 79479 . T C 1162 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 80616 . C G 2699.75 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 82843 . TC T 1906.19 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 82897 . C T 1915.16 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 84528 . T G 2643.85 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 89200 . G T 2132.57 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 89871 . C T 2313.58 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 92199 . T G 346.466 . AB=0;AO=15;DP=15;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:15:450:-40.7941,-4.51545,0 +NC_000962.3 97696 . T C 1965.66 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 98966 . G C 2501.75 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 101179 . G A 1505.11 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 102650 . A C 2260.24 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 103600 . A G 1671.77 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 103823 . GGCCGTG CGCCTTT 350.523 . AB=0;AO=16;DP=18;QA=480;QR=30;RO=1;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:18:1:30:16:480:-40.4941,-2.4179,0 +NC_000962.3 103836 . GTTGT TTTGC 426.64 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 103846 . G A 426.64 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 103893 . CAGC GAGG 298.739 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 104712 . C T 2053.73 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 104824 . C A 2567.1 . AB=0;AO=97;DP=100;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 105045 . G C 2959.48 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 108130 . A G 1742.43 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 110728 . C T 2799.64 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 115499 . T G 1315.91 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 116000 . T G 2602.32 . AB=0;AO=99;DP=101;QA=2970;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:99:2970:-261.862,-24.7049,0 +NC_000962.3 117295 . G A 2776.54 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 120522 . C T 2098.5 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 122109 . A G 2303.76 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 122616 . GT G 1932.39 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 123520 . T C 2611.28 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 123740 . TG T 2097.96 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.21,-23.7814,0 +NC_000962.3 125830 . G GA 1638.21 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 126803 . A G 2039.35 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 129351 . C T 1135.37 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 131174 . T TG 2880.03 . AB=0;AO=108;DP=112;QA=3240;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:108:3240:-291.558,-32.5112,0 +NC_000962.3 132417 . C G 436.08 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 132646 . G T 303.587 . AB=0;AO=13;DP=14;QA=390;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:1:30:13:390:-32.3953,-1.21485,0 +NC_000962.3 133839 . C T 2198.2 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 137233 . C T 2903.14 . AB=0;AO=110;DP=113;QA=3300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:110:3300:-294.257,-30.7147,0 +NC_000962.3 139556 . A AC 1907.86 . AB=0;AO=72;DP=79;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 139756 . T C 2208.1 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 139954 . A C 2424.18 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 140857 . C T 1124.18 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 143207 . T C 1893.48 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 144564 . C T 1641.53 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 146087 . T C 2961.97 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 146788 . G A 2260.41 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 146872 . C T 2475.29 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 154191 . A G 1772.8 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 154283 . T C 1747.05 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 160976 . C G 1738.18 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 162226 . G A 2669.12 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 167315 . C T 2285.41 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 167986 . C T 1424.01 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 168787 . C T 1583.37 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 169400 . G A 2526.65 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 170642 . T G 1893.24 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 171129 . G A 2392.48 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 177049 . TG T 2207.38 . AB=0;AO=83;DP=86;QA=2490;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 177150 . G C 2208.93 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 177857 . G A 2376.05 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 188800 . T C 2464.51 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 189948 . C G 2691.97 . AB=0;AO=101;DP=103;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 190207 . C G 2530.56 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 192924 . C A 1702.45 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 194305 . C CGG 2127.08 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 194681 . G C 2558.87 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 195360 . T C 2366.1 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 196255 . CG C 2959.44 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 196353 . C T 2510.49 . AB=0;AO=96;DP=98;QA=2880;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:2:60:96:2880:-253.763,-23.8018,0 +NC_000962.3 196642 . C T 3065.51 . AB=0;AO=115;DP=116;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:115:3450:-310.455,-34.6185,0 +NC_000962.3 196874 . C T 2985.6 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 199470 . T G 2074.35 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 205761 . C T 2449.9 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 206339 . T C 1506.31 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 206481 . CGGG GGGT 843.82 . AB=0;AO=33;DP=37;QA=990;QR=30;RO=1;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:37:1:30:33:990:-86.3875,-7.53541,0 +NC_000962.3 208316 . AT A 2150.1 . AB=0;AO=81;DP=86;QA=2430;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 208322 . T CG 2122.34 . AB=0;AO=80;DP=85;QA=2400;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 211993 . C A 1839.01 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 215238 . C T 2220.06 . AB=0;AO=85;DP=89;QA=2550;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:85:2550:-224.068,-20.7904,0 +NC_000962.3 217201 . T C 2336.28 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 223747 . C CG 2096.59 . AB=0;AO=79;DP=87;QA=2370;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 223942 . T C 1964.92 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 225323 . T C 2381.06 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 225668 . C T 2905.99 . AB=0;AO=110;DP=113;QA=3300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:110:3300:-294.257,-30.7147,0 +NC_000962.3 226676 . G A 2252.27 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 226929 . C T 2826.04 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 227098 . T C 2910.88 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 230576 . G GT 1997.95 . AB=0;AO=76;DP=78;QA=2280;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:76:2280:-202.441,-20.5098,0 +NC_000962.3 231114 . C G 2234.32 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 233358 . A C 2097.18 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 233364 . G C 2023.33 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 234477 . T G 1776.9 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 234496 . C CGT 1632.28 . AB=0;AO=62;DP=67;QA=1860;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 243598 . A G 2236.16 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 244550 . A G 2020.57 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 249522 . T C 1537.41 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 250952 . G A 956.676 . AB=0;AO=38;DP=41;QA=1140;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:2:60:38:1140:-97.1859,-6.64198,0 +NC_000962.3 251575 . G A 2741.99 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 251669 . T C 2689.33 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 254903 . C A 2325.35 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 257788 . G GAGGATCATCAAGGGTGCGTCGCGGAAGTA 1829.08 . AB=0;AO=69;DP=74;QA=2070;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 259689 . G A 1910.25 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 260282 . G T 1864.77 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 261869 . T C 1533.23 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 263149 . A C 1743.76 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 264298 . C A 1773.26 . AB=0;AO=68;DP=70;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:68:2040:-180.874,-18.0715,0 +NC_000962.3 264984 . 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AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 285772 . A C 2589.45 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 285871 . A G 2229.59 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 289300 . C T 2370.85 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 290374 . T C 1797.42 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 290738 . A C 2581.26 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 293628 . A AC 1769.01 . AB=0;AO=67;DP=72;QA=2010;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 304923 . A G 1933.93 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 308121 . C T 1962.6 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 308312 . G A 1038.96 . AB=0;AO=41;DP=43;QA=1230;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:2:60:41:1230:-105.285,-7.24511,0 +NC_000962.3 309756 . C T 1394.69 . AB=0;AO=54;DP=57;QA=1620;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:30:54:1620:-143.079,-13.857,0 +NC_000962.3 309765 . C T 1362.81 . AB=0;AO=52;DP=54;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 310973 . G A 2521.75 . AB=0;AO=95;DP=99;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 311167 . T C 2119.72 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 311613 . G T 2190.25 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 312138 . C A 2376.24 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 313425 . G T 2499.47 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 318149 . C T 1700.16 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 320180 . A G 2097.41 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 325505 . T C 1649.71 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 326002 . A G 2883.67 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 326293 . C T 2380.18 . AB=0;AO=91;DP=94;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:91:2730:-240.265,-22.5966,0 +NC_000962.3 331588 . G A 2399.24 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 333212 . G C 2584.51 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 333292 . A G 2440.9 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 338020 . A C 303.502 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 338100 . T C 311.128 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 339508 . C T 1776.73 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 340372 . T C 1313.57 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.222,-15.0515,0 +NC_000962.3 342146 . A C 2915.74 . AB=0;AO=110;DP=111;QA=3300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:110:3300:-294.257,-30.4148,0 +NC_000962.3 343281 . G C 2365.52 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 344288 . C G 1912.77 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 346275 . C G 1560.57 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 350489 . G C 3070.31 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 355726 . C T 2076.34 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 356528 . A G 1595.82 . 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AB=0;AO=76;DP=78;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:76:2280:-202.471,-20.4797,0 +NC_000962.3 373282 . TA T 1039.49 . AB=0;AO=40;DP=42;QA=1200;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 373942 . C T 2258.15 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 376774 . T C 2069.81 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 378357 . T G 2363.27 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 378939 . G C 2877.26 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 379029 . G A 2564.79 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 381030 . A G 2128.37 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 384380 . A C 2206.64 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 386432 . C G 2135.55 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 390828 . T C 2205.41 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 391853 . A G 2444.45 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 392261 . T C 2371.82 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 393941 . C T 2263.04 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 394803 . G A 1897.09 . AB=0;AO=74;DP=77;QA=2220;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:3:90:74:2220:-191.672,-14.7805,0 +NC_000962.3 396750 . G A 2230.7 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 399909 . TG T 1799.95 . AB=0;AO=68;DP=72;QA=2040;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 403980 . G A 2511.8 . AB=0;AO=96;DP=98;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:96:2880:-256.463,-26.5003,0 +NC_000962.3 404326 . T C 2715.35 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 406274 . T C 1525.74 . AB=0;AO=60;DP=62;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:60:1800:-159.277,-15.6632,0 +NC_000962.3 406389 . G A 1972.96 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 408178 . C T 2554.42 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 412280 . T G 2126.23 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 412975 . T C 1294.88 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 414486 . C T 2530.93 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 420008 . A G 2960.88 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 420405 . C T 2996.02 . AB=0;AO=113;DP=116;QA=3390;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:1:30:113:3390:-302.356,-31.6178,0 +NC_000962.3 423334 . G A 2475.1 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 424250 . A G 2006.1 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 424320 . T TC 2015.76 . AB=0;AO=76;DP=83;QA=2280;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 424790 . C CTA 2046.22 . AB=0;AO=77;DP=80;QA=2310;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 424932 . T A 1787.12 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 426768 . C T 400.031 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 428276 . CCA C 1180.8 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 428698 . C T 2423.08 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 432195 . T C 2515.09 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 434327 . A G 1609.15 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 438271 . G A 1813.36 . AB=0;AO=69;DP=71;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 439711 . T C 2203.09 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 445074 . G A 1453.57 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 445780 . C T 2341.95 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 447442 . C T 2749.58 . AB=0;AO=104;DP=106;QA=3120;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:104:3120:-278.06,-28.9085,0 +NC_000962.3 447525 . G C 2853.76 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 452288 . C T 1042.78 . AB=0;AO=42;DP=48;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:42:1260:-113.369,-12.6433,0 +NC_000962.3 454295 . T C 1121.89 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 455325 . CGGGT GGGGC 2396.31 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 456511 . G A 1972.57 . AB=0;AO=75;DP=77;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 457452 . T G 1823.84 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 459399 . A C 1992.61 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 464914 . G A 1824.35 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 467497 . C CG 1157.45 . AB=0;AO=44;DP=47;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 467508 . C CG 1159 . AB=0;AO=44;DP=46;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 467516 . G C 1195.35 . AB=0;AO=46;DP=47;QA=1380;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:1:30:46:1380:-121.482,-11.1488,0 +NC_000962.3 467526 . C G 1214.83 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 467546 . G C 1211.83 . AB=0;AO=46;DP=49;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 467557 . A C 1321.07 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 467564 . A C 1348.04 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 467585 . G C 1319.78 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 467590 . T C 1347.7 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 467621 . T G 1265.96 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 467638 . G T 1052.82 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 468357 . A G 1670.95 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 469042 . C T 1192.13 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 471469 . C T 1935.45 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 471666 . A G 2464.45 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 472471 . G A 2290.97 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 472711 . T TTTGTGGGCC 1837.98 . AB=0;AO=72;DP=85;QA=2160;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:85:3:90:72:2160:-186.273,-14.4784,0 +NC_000962.3 475178 . T C 2127.08 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 477214 . G T 1988 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 483935 . T G 2671.79 . AB=0;AO=101;DP=103;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:101:3030:-269.961,-28.0055,0 +NC_000962.3 485230 . C T 3122.58 . AB=0;AO=117;DP=119;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:119:0:0:117:3510:-315.854,-35.2205,0 +NC_000962.3 485631 . C T 3131.99 . AB=0;AO=118;DP=120;QA=3540;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:1:30:118:3540:-315.854,-33.123,0 +NC_000962.3 485785 . T G 2657.73 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 489935 . G C 2719.87 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 490972 . C A 2354.82 . AB=0;AO=90;DP=92;QA=2700;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:2:60:90:2700:-237.566,-21.9956,0 +NC_000962.3 491742 . T C 2339.99 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 492150 . G C 1802.99 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 492655 . G A 1885.01 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 495473 . C T 2554.79 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 498531 . A G 2547.95 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 498557 . C A 2232.91 . AB=0;AO=85;DP=88;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 502589 . C G 2326.86 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 503354 . G C 2692.75 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 505974 . G A 2971.27 . AB=0;AO=112;DP=113;QA=3360;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:30:112:3360:-299.657,-31.0168,0 +NC_000962.3 513257 . T C 2655.11 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 514657 . T G 1430.06 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 517358 . T C 1472.24 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 517411 . A G 1570.14 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 519185 . T G 1550.24 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 520400 . T G 2736.28 . AB=0;AO=104;DP=106;QA=3120;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:2:60:104:3120:-275.36,-26.21,0 +NC_000962.3 522081 . A G 2210.38 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 524891 . C A 2458.99 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 527316 . C G 2445.4 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 528354 . C A 1887.91 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 529363 . C T 3738.53 . AB=0;AO=140;DP=140;QA=4200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:140:0:0:140:4200:-378.245,-42.1442,0 +NC_000962.3 534427 . T A 2502.04 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 538622 . C T 2339.01 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 541201 . A G 2125.1 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 542977 . C T 2297 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 546357 . A G 1886.94 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 549251 . C T 2349.88 . AB=0;AO=89;DP=91;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 549747 . G A 2397.01 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 550918 . C A 2001.59 . AB=0;AO=77;DP=79;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:77:2310:-202.471,-18.0822,0 +NC_000962.3 551525 . A C 2286.75 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 555945 . T C 2333.36 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 555991 . A G 2331.93 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 556035 . G T 2341.03 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 556353 . G A 2474.92 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 560664 . CAA TAG 2988.1 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.504,-33.7154,0 +NC_000962.3 564723 . C T 1959.75 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 565404 . G T 2023.28 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 565655 . A G 2824.9 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 568693 . G T 2391.52 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 573262 . A G 2181.53 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 573384 . T G 1799.41 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 580336 . C A 2337.7 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 584171 . T C 1984.56 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 584511 . G T 1801.43 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 590436 . T C 2613.93 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 590763 . G C 2068.05 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 591965 . G A 2557.61 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 595501 . G A 984.375 . AB=0;AO=39;DP=39;QA=1170;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:39:1170:-105.585,-11.7402,0 +NC_000962.3 597816 . A G 2750.2 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 598475 . G A 2390.69 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 599868 . A G 3197.86 . AB=0;AO=120;DP=120;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:120:3600:-324.253,-36.1236,0 +NC_000962.3 610120 . T G 2318.7 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 614989 . AA GC 1830.57 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 615938 . G A 2045.33 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 621390 . G A 2125.35 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 624349 . G GT 938.938 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 624358 . T TC 803.578 . AB=0;AO=31;DP=36;QA=930;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:31:930:-83.6879,-9.33193,0 +NC_000962.3 627350 . C G 1104.41 . AB=0;AO=43;DP=44;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:1:30:43:1290:-113.384,-10.2458,0 +NC_000962.3 630722 . G C 1672.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 634586 . C T 1845.85 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 636783 . C T 2198.87 . AB=0;AO=84;DP=87;QA=2520;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:60:84:2520:-221.368,-20.4894,0 +NC_000962.3 637319 . G A 3102.11 . AB=0;AO=117;DP=118;QA=3510;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:118:1:30:117:3510:-313.155,-32.522,0 +NC_000962.3 643483 . G A 2184.12 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 646531 . A T 2260.24 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 647833 . T G 2098.51 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 648002 . T G 1994.91 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 648856 . T C 2527.28 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 649345 . C T 2075.9 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 655707 . G A 2503.57 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 655986 . T G 2556.35 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 657578 . A G 2072.24 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 659341 . T C 2577.58 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 662911 . T C 2291.37 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 665293 . A G 2394.01 . 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T TCCCGCCGACGCCGCCGGTGCCGCCGGC 226.096 . AB=0;AO=10;DP=13;QA=300;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:10:300:-26.9961,-3.0103,0 +NC_000962.3 678440 . C T 1991.47 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 684290 . A G 2013.27 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 684391 . CT C 2268.74 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.107,-25.8886,0 +NC_000962.3 685461 . C G 2060.97 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 685608 . T C 1694.99 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 685955 . G A 1942.22 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 686972 . T C 1610.53 . AB=0;AO=63;DP=66;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:63:1890:-167.376,-16.5663,0 +NC_000962.3 688792 . T TG 3332.58 . AB=0;AO=125;DP=132;QA=3750;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:132:0:0:125:3750:-337.451,-37.6288,0 +NC_000962.3 690248 . C A 1969.57 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 690450 . A C 2218.78 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 690465 . T G 2236.78 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 698968 . G A 1556.97 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 700776 . T C 1726.93 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 701867 . C T 1726.67 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 704997 . G A 2748.93 . AB=0;AO=104;DP=107;QA=3120;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:1:30:104:3120:-278.06,-28.9085,0 +NC_000962.3 705273 . C T 1609.85 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 705570 . C T 1454.2 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 705602 . T C 1426.57 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 712192 . G GA 2239.04 . AB=0;AO=85;DP=90;QA=2550;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:85:2550:-226.767,-23.189,0 +NC_000962.3 712693 . A G 1774.16 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 713310 . T C 1314.21 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 715266 . A G 1905.54 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 717588 . A G 1396.71 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 719545 . A G 1566.97 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 720863 . G T 1458.08 . AB=0;AO=61;DP=69;QA=1830;QR=210;RO=7;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:7:210:61:1830:-145.779,-1.57277,0 +NC_000962.3 722852 . G A 1667.14 . AB=0;AO=65;DP=68;QA=1950;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:3:90:65:1950:-167.376,-12.0713,0 +NC_000962.3 726498 . C A 1721.63 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 728897 . C T 2470.28 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 730087 . G A 2178.95 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 734116 . T C 2985.08 . AB=0;AO=112;DP=114;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 745876 . C G 819.323 . AB=0;AO=33;DP=35;QA=990;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:2:60:33:990:-83.6879,-4.83687,0 +NC_000962.3 749968 . T C 1862.35 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 752046 . C T 2395.67 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 753668 . C T 1802.99 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 754186 . A G 1117.52 . AB=0;AO=43;DP=44;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 754387 . G A 1112.49 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.383,-12.9443,0 +NC_000962.3 757182 . A G 2574.3 . AB=0;AO=98;DP=100;QA=2940;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:2:60:98:2940:-259.163,-24.4038,0 +NC_000962.3 763031 . T C 2448.96 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 763884 . CCC TCA 2074.49 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.641,-23.4803,0 +NC_000962.3 765171 . C T 2387.9 . AB=0;AO=91;DP=94;QA=2730;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:91:2730:-240.265,-22.5966,0 +NC_000962.3 767414 . G A 1615.66 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 767609 . A G 2097.63 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 771950 . C T 2372.2 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 775639 . T C 2338.09 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 776100 . G A 2839.99 . AB=0;AO=108;DP=111;QA=3240;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:2:60:108:3240:-286.159,-27.7141,0 +NC_000962.3 777581 . G T 1854.06 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 781395 . T C 2171.76 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 781413 . TGCCGG T 1955.36 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 784450 . C T 2422.67 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 786137 . A C 2207.9 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 788354 . C A 2720.71 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 797597 . C T 2254.69 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 799136 . AC A 2153.94 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 800357 . C A 2588.78 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 810287 . C G 1879.33 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 811492 . C G 3035.63 . AB=0;AO=114;DP=116;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:114:3420:-307.756,-34.3174,0 +NC_000962.3 812502 . C T 2929.62 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 815236 . T C 2474.55 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 815851 . A G 1317.03 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 817696 . G A 2313.55 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 819213 . T C 2180.69 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 820483 . G T 1381.59 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 820752 . C T 1597.79 . AB=0;AO=61;DP=65;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 821907 . T C 2183 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 829719 . G A 1636.53 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 830868 . G GGC 1502.27 . AB=0;AO=57;DP=66;QA=1710;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:57:1710:-153.866,-17.1587,0 +NC_000962.3 832201 . C T 1975.51 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 832246 . A G 2252.8 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 833374 . GCCGGCGGGGCCGGCGGATTGTTGTTCGGCAACGGCGGCGCGGGCGGGTCCGGCGCGC G 455.158 . AB=0;AO=18;DP=21;QA=540;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 836272 . A G 221.445 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 836454 . A G 276.084 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 836538 . A G 406.465 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 836658 . A G 528.692 . AB=0;AO=21;DP=21;QA=630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:21:630:-56.9918,-6.32163,0 +NC_000962.3 837033 . A G 238.848 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 841494 . CA GG 2394.97 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 841764 . G C 2443.3 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 842050 . C T 2989.31 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 846996 . G A 1000.8 . AB=0;AO=39;DP=41;QA=1170;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:1:30:39:1170:-102.585,-9.34159,0 +NC_000962.3 847995 . T C 1991.23 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 848407 . C T 2694.12 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 850985 . A G 1791.19 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 851797 . C A 1971.19 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 852910 . C T 2502.59 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 854252 . GC G 2106.7 . AB=0;AO=80;DP=87;QA=2400;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 854832 . T G 2481.14 . AB=0;AO=94;DP=95;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:94:2820:-251.064,-25.5983,0 +NC_000962.3 856034 . T G 2060.1 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 857696 . A G 2793.84 . AB=0;AO=105;DP=106;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 865761 . C T 2777.2 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 867296 . C T 2684.11 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 869893 . G A 1030.09 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 870112 . C T 1512.03 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 871271 . A C 1991.68 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 872113 . C T 2882.07 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 874835 . C CCG 2214.38 . AB=0;AO=84;DP=87;QA=2520;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 880482 . C T 2354.64 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 880562 . G T 2253.03 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 882257 . T C 1453.26 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 885689 . G T 2314.77 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 891404 . C T 1299.04 . AB=0;AO=51;DP=53;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:51:1530:-134.98,-12.954,0 +NC_000962.3 893733 . T G 2485.64 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 894888 . T C 2253.75 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 895082 . A G 2206.58 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 895120 . C T 1833.73 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 896629 . C T 1746.12 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 900221 . T C 2282.55 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 903550 . T C 2210.59 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 903913 . T C 2182.79 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 906857 . A G 2265.47 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 910015 . C A 1867.88 . AB=0;AO=72;DP=75;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 911261 . T C 2016.89 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 913274 . C G 2416.03 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 914027 . C A 2933.1 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 916046 . T G 2016.48 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 921813 . C G 2135.33 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 925342 . C CG 511.368 . AB=0;AO=20;DP=24;QA=600;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:20:600:-53.9838,-6.0206,0 +NC_000962.3 927930 . A G 2331.38 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 928483 . C T 1288.02 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 929748 . C T 504.105 . AB=0;AO=20;DP=20;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:20:600:-54.2922,-6.0206,0 +NC_000962.3 931123 . T C 2775.54 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 932280 . T C 1887.67 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 933699 . G T 2213.35 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 934230 . C G 3174.32 . AB=0;AO=119;DP=120;QA=3570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:119:3570:-321.254,-35.8226,0 +NC_000962.3 934611 . G T 1802.18 . AB=0;AO=70;DP=72;QA=2100;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:70:2100:-183.573,-15.975,0 +NC_000962.3 938246 . A G 2033.66 . AB=0;AO=78;DP=80;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:78:2340:-205.17,-18.3832,0 +NC_000962.3 940455 . G A 1925.97 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 941845 . C A 2046.89 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 945214 . G A 1927.06 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 948294 . T C 2121.91 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 949535 . T C 1938.28 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 951142 . C A 2639.68 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 952597 . C T 1876.25 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 952810 . CT C 1722.38 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.715,-19.567,0 +NC_000962.3 953002 . T G 2298.42 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 955524 . A G 1691.79 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 957117 . T C 2556.89 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 960367 . A G 1260.94 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 968426 . A AGCCGGGTTG 1660.93 . AB=0;AO=64;DP=72;QA=1920;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:2:60:64:1920:-167.376,-14.4688,0 +NC_000962.3 969535 . GC G 1148.7 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 972653 . G A 1938.05 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 976043 . G T 2753.42 . AB=0;AO=104;DP=105;QA=3120;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:1:30:104:3120:-278.06,-28.6086,0 +NC_000962.3 977196 . G A 2125.37 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 979704 . G C 2306.15 . AB=0;AO=89;DP=92;QA=2670;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:3:90:89:2670:-232.166,-19.296,0 +NC_000962.3 986463 . G C 2949.23 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 987601 . C T 2336.11 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 990001 . G C 2044.3 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 992206 . C T 2202.61 . AB=0;AO=83;DP=85;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 993346 . A C 2122.1 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 996219 . G A 2821.96 . AB=0;AO=106;DP=108;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 1002342 . T C 2151.6 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1009490 . C T 2155.45 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1010204 . C CG 2468.58 . AB=0;AO=93;DP=96;QA=2790;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 1014815 . T G 2525.56 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1016131 . C A 2425.13 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 1019284 . C CG 1427.06 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1022613 . G A 2667.05 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 1023884 . C T 1828.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1024346 . A G 2691.72 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 1025106 . T C 2504.3 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1027727 . G C 2440.33 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1029997 . A G 1800.41 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1030965 . C A 1971.42 . AB=0;AO=75;DP=77;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 1032524 . T C 2264.26 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1035797 . T G 2153.6 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1037012 . T C 2453.65 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1037911 . C T 2234.32 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1039981 . T C 1836.92 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1040706 . A C 1880.4 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1043136 . C T 2339.86 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1047165 . T C 1723.41 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1048102 . G A 2023.79 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 1054784 . C G 2560.12 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1061386 . T C 1821.33 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1063765 . G A 1831.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1063922 . C T 1639.87 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1066038 . A G 2360.67 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1068151 . T C 2172.64 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1068432 . A G 2174.38 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1070702 . T C 1619.04 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1072342 . A G 1362.76 . AB=0;AO=52;DP=54;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 1074558 . G A 1967.05 . AB=0;AO=75;DP=78;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 1075167 . GCAT G 2040.95 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1075279 . T C 2860.41 . AB=0;AO=108;DP=111;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:108:3240:-291.558,-32.5112,0 +NC_000962.3 1075618 . G A 3510.35 . AB=0;AO=132;DP=134;QA=3960;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:134:1:30:132:3960:-353.649,-37.3374,0 +NC_000962.3 1076309 . G T 2221.72 . AB=0;AO=86;DP=89;QA=2580;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:3:90:86:2580:-224.068,-18.3929,0 +NC_000962.3 1077312 . A G 2710.93 . AB=0;AO=102;DP=105;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 1077624 . GC G 2226.98 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1077754 . C T 2438.21 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1079927 . C A 2070.9 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 1080192 . G A 1780.24 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1081457 . A G 2283.56 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1081681 . T C 2002.32 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 1083755 . A G 2196.58 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1086648 . C A 1624.39 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 1087193 . G C 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1090188 . A AG 1562.23 . AB=0;AO=59;DP=61;QA=1770;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1091590 . TGGC T 301.842 . AB=0;AO=12;DP=15;QA=360;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:15:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 1092180 . GCGGCAA G 836.09 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.3292,-9.63296,0 +NC_000962.3 1093406 . A G 1692.29 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1094413 . GCC CCT 674.771 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 1095644 . C T 575.905 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 1095678 . A G 451.347 . AB=0;AO=19;DP=20;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 1096470 . G C 396.124 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 1096508 . CCT GCC 609.792 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 1096633 . T G 1962.31 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1097023 . G A 2825.95 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1098523 . T A 2019.38 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1100234 . T C 2716.99 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1103487 . G A 3044.69 . AB=0;AO=114;DP=114;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:114:3420:-308.055,-34.3174,0 +NC_000962.3 1103995 . C T 2289.57 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1104690 . T G 2965.55 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 1105284 . G A 2724.72 . AB=0;AO=103;DP=104;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:103:3090:-275.36,-28.3076,0 +NC_000962.3 1106422 . T C 2716.3 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1107940 . A C 1435.73 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 1109163 . C G 1607.98 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1109975 . A G 1938.05 . AB=0;AO=73;DP=75;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1110956 . T G 1533.84 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1111455 . C T 2249.66 . AB=0;AO=86;DP=88;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 1111469 . C T 2365.01 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1111518 . T C 2009.65 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1113290 . G C 2955.54 . AB=0;AO=111;DP=114;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 1113403 . G A 2857.58 . AB=0;AO=108;DP=109;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:1:30:108:3240:-288.858,-29.8127,0 +NC_000962.3 1117405 . C T 2156.93 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1119739 . C T 1919.14 . AB=0;AO=73;DP=75;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 1121071 . G A 1185.74 . AB=0;AO=45;DP=46;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:45:1350:-121.482,-13.5464,0 +NC_000962.3 1123597 . A G 2879.39 . AB=0;AO=108;DP=109;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:108:3240:-291.558,-32.5112,0 +NC_000962.3 1126889 . G C 2043.41 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1127648 . C A 2808.56 . AB=0;AO=106;DP=107;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:1:30:106:3180:-283.459,-29.2106,0 +NC_000962.3 1131229 . C CG 1950.03 . AB=0;AO=76;DP=81;QA=2280;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1131300 . G A 2699.38 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 1131565 . C T 2322.41 . AB=0;AO=89;DP=91;QA=2670;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:2:60:89:2670:-234.866,-21.6946,0 +NC_000962.3 1139222 . G A 1823.32 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1143832 . A C 1869.59 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1144585 . A G 2124.94 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1148259 . A G 2429.69 . AB=0;AO=92;DP=94;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:92:2760:-245.664,-25.2962,0 +NC_000962.3 1149551 . C T 1663.27 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1150585 . G A 1749.77 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 1150971 . TC T 2594.02 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 1151163 . A C 2716.65 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1151485 . CGT C 1511.43 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 1155700 . C T 2372.01 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1157771 . G C 2131.4 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1160770 . T A 557.015 . AB=0;AO=24;DP=25;QA=720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:24:720:-64.7906,-7.22472,0 +NC_000962.3 1163134 . T C 1881.12 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1164336 . G A 2532.74 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 1165521 . T TA 1933.1 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1166482 . G A 2233.78 . AB=0;AO=84;DP=87;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1168715 . C CT 1481.64 . AB=0;AO=56;DP=60;QA=1680;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1169360 . G A 2103.05 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1173612 . G A 1807.87 . AB=0;AO=69;DP=73;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:69:2070:-183.573,-18.3725,0 +NC_000962.3 1178116 . T C 2236.58 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1182192 . G A 2182.79 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1184826 . G T 1830.58 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1188277 . G A 1853.58 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1188917 . G A 300.65 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1189253 . TCGCCGCCGGCGCCGGCGGCCGCGCCGTTGCCGCCGG T 269.852 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 1191741 . G A 793.689 . AB=0;AO=34;DP=35;QA=1020;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:34:1020:-91.7867,-10.235,0 +NC_000962.3 1191817 . A C 1601.64 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1192128 . C T 2162.87 . AB=0;AO=82;DP=84;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 1192830 . G A 2088.44 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1199019 . T C 2206.44 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 1199690 . A G 2342.01 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1200418 . A G 1992.14 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1203824 . T C 2685.13 . AB=0;AO=101;DP=102;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 1211369 . A C 2781.8 . AB=0;AO=105;DP=106;QA=3150;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:105:3150:-280.759,-28.9096,0 +NC_000962.3 1212626 . ACGGCGGCGC A 488.563 . AB=0;AO=19;DP=20;QA=570;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:20:0:0:19:570:-51.2926,-5.71957,0 +NC_000962.3 1213007 . CCGGTGGGGCCGGAGGCAA C 594.574 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.276,-6.92369,0 +NC_000962.3 1213679 . T TCGGCGACGGCGGCGCCGGTGGCGGCGGCGGGGCCGGCGGCATCGG 200.172 . AB=0;AO=9;DP=11;QA=270;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 1214509 . GCGGATGTCATACATGATTGCCACACCAGCGGCGTTGACGGCGGCGGCAA G 1777.6 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.115,-20.169,0 +NC_000962.3 1220570 . G T 2883.19 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 1220680 . T C 2555.98 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1224367 . T C 1670.13 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 1228116 . A G 1910.38 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1230778 . G A 2585.18 . AB=0;AO=99;DP=103;QA=2970;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:2:60:99:2970:-261.862,-25.0048,0 +NC_000962.3 1235446 . T C 2263.65 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1237403 . G A 1501.52 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 1248382 . A G 1564.36 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 1248936 . G C 1992.85 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1248978 . T C 1908.93 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1250340 . A G 1803.11 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1250357 . T G 1796.3 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1251199 . C T 2673.15 . AB=0;AO=101;DP=103;QA=3030;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:101:3030:-269.961,-28.0055,0 +NC_000962.3 1252164 . T C 2124.05 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1252538 . G A 3204.08 . AB=0;AO=120;DP=122;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:0:0:120:3600:-323.953,-36.1236,0 +NC_000962.3 1254543 . A C 3235.85 . AB=0;AO=122;DP=123;QA=3660;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:123:1:30:122:3660:-326.653,-34.0271,0 +NC_000962.3 1254562 . A G 2997.77 . AB=0;AO=114;DP=117;QA=3420;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:2:60:114:3420:-302.356,-29.5203,0 +NC_000962.3 1261056 . C T 2369.01 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1262230 . C T 1476.42 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 1271143 . A AG 2235.62 . AB=0;AO=84;DP=87;QA=2520;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1273250 . G GA 1881.52 . AB=0;AO=71;DP=76;QA=2130;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1275957 . T C 2042.73 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1277869 . G GT 2368.43 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1281118 . T C 3204.2 . AB=0;AO=120;DP=120;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:120:3600:-324.253,-36.1236,0 +NC_000962.3 1281771 . T C 1984.54 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1284754 . G T 2132.99 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 1287068 . C T 1937.28 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1287112 . T C 2124.94 . AB=0;AO=80;DP=82;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1287160 . A C 2074.27 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 1292102 . A G 2171.42 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1300786 . G T 2185.72 . AB=0;AO=85;DP=88;QA=2550;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:85:2550:-221.368,-18.0919,0 +NC_000962.3 1302055 . C T 2583.65 . AB=0;AO=97;DP=100;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 1306259 . A G 2332.09 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1307598 . C G 2308.2 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 1310316 . C T 1866.36 . AB=0;AO=71;DP=73;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1313338 . A GC 1318.41 . AB=0;AO=50;DP=53;QA=1500;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 1314617 . C T 1960.52 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1315191 . A C 1780.45 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 1315884 . G A 948.364 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 1320508 . G A 2472.32 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 1320614 . C G 2613.23 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1324847 . T C 2399.88 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1327890 . G A 2354.51 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1328687 . G C 2263.65 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 1334925 . A C 3176.02 . AB=0;AO=120;DP=120;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:120:3600:-324.253,-36.1236,0 +NC_000962.3 1338105 . C T 1456.7 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1340052 . G T 1841.32 . AB=0;AO=71;DP=74;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:71:2130:-186.254,-16.616,0 +NC_000962.3 1340208 . G A 1490.76 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 1340274 . T C 1438.47 . AB=0;AO=56;DP=58;QA=1680;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:2:60:56:1680:-145.779,-11.7606,0 +NC_000962.3 1340775 . C T 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1341040 . CTCAC ATCAT 2125.37 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1344857 . C T 1617.36 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 1348518 . GCCA G 1666.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1351172 . A G 2014.4 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1356648 . C T 1845.89 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1358940 . C A 2082.93 . AB=0;AO=80;DP=83;QA=2400;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:2:60:80:2400:-210.57,-19.2852,0 +NC_000962.3 1360209 . T C 1821.55 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 1362006 . T C 2046.31 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1365837 . C CGG 2018.08 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1367484 . T G 2318.72 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 1368947 . A G 1986.38 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1369389 . C T 1901.73 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 1369735 . G A 2046.54 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1369927 . C T 1931.28 . AB=0;AO=75;DP=77;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:2:60:75:2250:-197.072,-17.4801,0 +NC_000962.3 1374065 . T C 1771.59 . AB=0;AO=67;DP=69;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1374578 . C T 2365.02 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1374639 . T A 2093.32 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1375724 . A C 1911.81 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 1382628 . T C 1919.37 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 1387211 . G A 1779.47 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1389866 . C T 3090.62 . AB=0;AO=116;DP=118;QA=3480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:118:0:0:116:3480:-313.155,-34.9195,0 +NC_000962.3 1390763 . C T 1994.68 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1393626 . A G 808.796 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 1395010 . A G 2346.12 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1396922 . T C 2010.35 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1397201 . A G 1506.32 . AB=0;AO=57;DP=59;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1397215 . C G 1428.52 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.02,-16.2556,0 +NC_000962.3 1398256 . A C 2337.67 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1399129 . C T 2394.78 . AB=0;AO=90;DP=93;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1400396 . A G 1776.47 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 1401718 . C A 2323.01 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 1402817 . A C 2160.14 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1409030 . CGGATTTCTATT C 1752.25 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1410062 . G C 2259.03 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1411210 . T G 1556.99 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1412686 . G A 1968.64 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1413148 . C T 1429.74 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1414021 . C T 3014.85 . AB=0;AO=113;DP=113;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:113:3390:-305.356,-34.0164,0 +NC_000962.3 1414564 . A T 1751.21 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1414653 . C T 1376.41 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1417019 . C T 1385.73 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 1417554 . G C 2377.58 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 1417793 . G A 2163.08 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 1424699 . T C 1649.44 . AB=0;AO=63;DP=65;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:63:1890:-167.376,-16.5663,0 +NC_000962.3 1426928 . C T 2012.33 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1438115 . G A 2334.9 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 1440469 . C G 2477.55 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1443354 . C T 1131.09 . AB=0;AO=46;DP=48;QA=1380;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:2:60:46:1380:-118.783,-8.75026,0 +NC_000962.3 1445781 . A G 2578.49 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 1445977 . C T 3125.58 . AB=0;AO=117;DP=117;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:0:0:117:3510:-316.154,-35.2205,0 +NC_000962.3 1457144 . C T 1959.13 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1458144 . C A 2616.62 . AB=0;AO=99;DP=100;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:99:2970:-264.562,-27.1034,0 +NC_000962.3 1465502 . G A 2314.34 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 1468389 . C T 355.644 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 1468420 . G A 272.474 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1471659 . C T 2612.17 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1474709 . G T 2613.93 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 1479085 . T C 1778.19 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1480972 . T C 2423.08 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1481185 . A C 1984.55 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1481602 . T G 2120.63 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1482627 . T C 2475.32 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1484708 . A C 2045.43 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1490905 . A G 2857.95 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 1490911 . G A 2810.19 . AB=0;AO=106;DP=108;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:1:30:106:3180:-283.459,-29.5106,0 +NC_000962.3 1492194 . T C 2152.02 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1496964 . G T 2035.87 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 1499274 . C G 1975.09 . AB=0;AO=75;DP=77;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:75:2250:-199.771,-20.1787,0 +NC_000962.3 1499293 . C T 1965.64 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1505194 . T C 2128.58 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 1505973 . G A 2479.21 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1509540 . C A 1969.35 . AB=0;AO=76;DP=78;QA=2280;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:76:2280:-199.771,-17.7812,0 +NC_000962.3 1514010 . G T 2152.68 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1517912 . C T 2554.97 . AB=0;AO=96;DP=98;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 1521526 . T C 2576.48 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 1522862 . C T 2440.3 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1523175 . A C 2395.73 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1523791 . A G 2331.58 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1525160 . G A 2369.7 . AB=0;AO=90;DP=92;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:90:2700:-240.265,-24.6941,0 +NC_000962.3 1526100 . A G 2876.32 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 1526819 . C A 2203.85 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1527802 . C T 2529.75 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1533241 . G C 1263.61 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1533466 . TCCCGT CCCCAC 265.43 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 1533546 . TCGCG GAGCC 820.542 . AB=0;AO=34;DP=35;QA=1020;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:34:1020:-91.7867,-10.235,0 +NC_000962.3 1533583 . G A 1168.16 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 1534548 . G A 2506.5 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1535643 . C T 1857.03 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1536251 . G T 2224.55 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 1540141 . T C 1107.65 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 1544255 . C T 2447.65 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1545119 . C T 2954.15 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 1545517 . G A 2100.03 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1546703 . C T 2475.87 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1547125 . T C 2825.62 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1548087 . G A 1937.27 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1550719 . C T 2722.06 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 1552547 . G A 1624.35 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1559562 . C A 1299.72 . AB=0;AO=51;DP=54;QA=1530;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:2:60:51:1530:-132.281,-10.5554,0 +NC_000962.3 1560912 . G A 2016.48 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1563431 . C T 1696.6 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1563686 . G T 1720.03 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1563717 . C T 1832.08 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1568178 . C T 2100.29 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1570566 . C A 2332.34 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 1572851 . T G 376.579 . AB=0;AO=16;DP=17;QA=480;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:1:30:16:480:-40.4941,-2.11794,0 +NC_000962.3 1573660 . T G 2253.95 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1574206 . T C 2369.59 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1575793 . A G 2341.22 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 1580181 . G A 2081.68 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 1581377 . C T 2754.91 . AB=0;AO=104;DP=105;QA=3120;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:1:30:104:3120:-278.06,-28.6086,0 +NC_000962.3 1584379 . A C 2554.07 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 1585283 . A C 1765.51 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 1585404 . G A 2154.78 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1586534 . C A 2244.76 . AB=0;AO=87;DP=90;QA=2610;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:3:90:87:2610:-226.767,-18.6939,0 +NC_000962.3 1588613 . A C 2098.34 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1588899 . G T 1562.4 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 1589739 . C T 2098.33 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1590555 . C T 2395.73 . AB=0;AO=90;DP=96;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 1594513 . G A 2019.6 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1600685 . C T 2457.51 . AB=0;AO=93;DP=95;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:93:2790:-248.364,-25.5972,0 +NC_000962.3 1601528 . C T 1893.72 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 1604290 . A T 2153.53 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1608276 . A C 2236.78 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1609840 . A G 1268.1 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 1610076 . C T 1501.79 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1611283 . T C 2627.55 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 1612624 . T TATCGGTACCGGTGCGCCAGGG 520.116 . AB=0;AO=21;DP=39;QA=630;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:39:1:30:21:630:-53.9922,-3.92305,0 +NC_000962.3 1613035 . T C 2560.66 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 1616572 . C T 1588.67 . AB=0;AO=60;DP=63;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 1616831 . A G 1858.51 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1617833 . C T 1965.64 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1619317 . C G 1197.74 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 1619777 . C T 2371.82 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1624791 . C G 1961.66 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1625259 . A C 1858.94 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1627351 . T C 2125.36 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 1630148 . A C 1903.82 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 1635527 . G A 2338.61 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 1636724 . G GCCGCCGGCC 425.097 . AB=0;AO=17;DP=18;QA=510;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:17:510:-45.8934,-5.11751,0 +NC_000962.3 1636826 . C A 357.658 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 1638020 . T C 1009.39 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 1638364 . C T 2103.29 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 1639418 . A G 1238.05 . AB=0;AO=47;DP=48;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:47:1410:-126.882,-14.1484,0 +NC_000962.3 1639594 . C A 1317.63 . AB=0;AO=51;DP=52;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:51:1530:-134.98,-12.654,0 +NC_000962.3 1639643 . T C 1693.15 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 1640442 . C T 3140.32 . AB=0;AO=119;DP=122;QA=3570;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:1:30:119:3570:-318.554,-33.424,0 +NC_000962.3 1644250 . G C 1826.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1645802 . T C 2503.57 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1647830 . G A 2638.81 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 1650072 . A G 1805.48 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1656178 . C T 744.231 . AB=0;AO=30;DP=33;QA=900;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:1:30:30:900:-78.2887,-6.63232,0 +NC_000962.3 1658535 . G T 1526.05 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 1659902 . T C 2829.69 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1659994 . C T 2850.6 . AB=0;AO=107;DP=109;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 1662424 . T A 1526.09 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 1676290 . C A 2053.17 . AB=0;AO=78;DP=80;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:78:2340:-207.87,-21.0818,0 +NC_000962.3 1688300 . T C 2151.18 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 1689349 . C T 2336.25 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 1691520 . T G 2832.96 . AB=0;AO=107;DP=108;QA=3210;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:1:30:107:3210:-286.159,-29.5117,0 +NC_000962.3 1692141 . A C 4040.26 . AB=0;AO=151;DP=152;QA=4530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:152:0:0:151:4530:-407.641,-45.4555,0 +NC_000962.3 1693561 . A G 2504.24 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 1694277 . A G 2134.48 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 1694547 . A C 2772.23 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 1695674 . G A 3489.88 . AB=0;AO=131;DP=131;QA=3930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:131:0:0:131:3930:-353.949,-39.4349,0 +NC_000962.3 1696499 . G GCGGT 2238.21 . AB=0;AO=86;DP=93;QA=2580;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 1698911 . G A 1860.47 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1699849 . G A 2422.32 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1700727 . C A 1801.61 . AB=0;AO=69;DP=70;QA=2070;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:69:2070:-183.573,-18.0725,0 +NC_000962.3 1706119 . T C 3008.33 . AB=0;AO=113;DP=114;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:113:3390:-305.056,-34.0164,0 +NC_000962.3 1706746 . C A 1584.2 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 1709432 . C T 2428 . AB=0;AO=92;DP=94;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:92:2760:-245.664,-25.2962,0 +NC_000962.3 1710356 . C A 1774.83 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 1713192 . A G 2449.9 . AB=0;AO=92;DP=95;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 1716472 . A G 2575.45 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 1718444 . T C 1884.04 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 1721490 . C G 1836.32 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1726816 . G T 1423.25 . AB=0;AO=54;DP=57;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 1728615 . A C 3126.02 . AB=0;AO=117;DP=117;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:0:0:117:3510:-316.154,-35.2205,0 +NC_000962.3 1728837 . A G 2879.83 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 1731329 . C T 2691.22 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 1731563 . A T 1658.06 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 1735903 . A G 2990.85 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 1739390 . A G 1966.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 1740766 . C T 2372.01 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 1745446 . T A 2690.43 . AB=0;AO=101;DP=103;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 1748854 . C T 2022.38 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1750465 . T C 3012.62 . AB=0;AO=113;DP=114;QA=3390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:113:3390:-305.056,-34.0164,0 +NC_000962.3 1752561 . T C 1376.81 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.621,-15.6536,0 +NC_000962.3 1753519 . G GC 622.94 . AB=0;AO=24;DP=24;QA=720;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:24:0:0:24:720:-65.0906,-7.22472,0 +NC_000962.3 1754016 . G GC 1719.98 . AB=0;AO=65;DP=68;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 1754299 . A C 2179.64 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1754983 . C T 2010.29 . AB=0;AO=76;DP=78;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 1758790 . C T 2205.73 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 1759252 . G T 2750.26 . AB=0;AO=104;DP=106;QA=3120;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:104:3120:-278.06,-28.9085,0 +NC_000962.3 1760292 . A G 2829.53 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 1760923 . T C 1693.11 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 1766689 . GCA G 2300.33 . AB=0;AO=89;DP=93;QA=2670;QR=90;RO=3;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:93:3:90:89:2670:-232.166,-19.5959,0 +NC_000962.3 1769780 . C T 2452.9 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1771639 . G A 2161.55 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 1778243 . G T 2240.86 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 1778430 . T C 2260.24 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 1789650 . CGTCA TGTCG 211.476 . AB=0;AO=9;DP=11;QA=270;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 1789671 . CGTGACCCA TGTGCTGGG 258.391 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 1789697 . A G 528.249 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 1789756 . A G 881.207 . AB=0;AO=37;DP=40;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 1789795 . ATCA GTCG 1428.47 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 1791823 . T C 1781.77 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 1792777 . TT CC 2149.25 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1797577 . A G 2036.86 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1798355 . G A 2567.25 . AB=0;AO=98;DP=100;QA=2940;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:2:60:98:2940:-259.163,-24.4038,0 +NC_000962.3 1803265 . G A 3256.24 . AB=0;AO=122;DP=122;QA=3660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:0:0:122:3660:-329.652,-36.7257,0 +NC_000962.3 1804409 . C A 2416.62 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 1805166 . G T 2371.04 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1814135 . A G 2005.48 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1817976 . A T 2072.02 . AB=0;AO=78;DP=81;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 1826054 . T C 2511.11 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1826343 . C T 2082.33 . AB=0;AO=79;DP=82;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 1826624 . G A 2010.58 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1827553 . C G 2287.36 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1829576 . C T 1715.8 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1832642 . GG TC 1909.29 . AB=0;AO=72;DP=76;QA=2160;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 1832738 . C T 2100.08 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1834319 . G A 1562.81 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 1836286 . G C 2001.81 . AB=0;AO=77;DP=79;QA=2310;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:60:77:2310:-202.471,-18.0822,0 +NC_000962.3 1839260 . T G 1940.58 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1839306 . A G 1938.05 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1839329 . G A 1876.91 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 1839759 . G C 2069.37 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 1847919 . C G 2372.97 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1848147 . C A 2030.42 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 1849191 . T C 2583.81 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 1849609 . T C 2779.66 . AB=0;AO=105;DP=107;QA=3150;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:1:30:105:3150:-280.759,-29.2096,0 +NC_000962.3 1853974 . C T 2011.19 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 1854045 . A G 1990.53 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1854300 . T C 1377.72 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 1856777 . G C 1446.04 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 1859559 . C A 1693.85 . AB=0;AO=67;DP=70;QA=2010;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:3:90:67:2010:-172.775,-12.6733,0 +NC_000962.3 1859989 . C T 2228.15 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 1862446 . C T 3148.79 . AB=0;AO=118;DP=120;QA=3540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:118:3540:-318.554,-35.5215,0 +NC_000962.3 1863660 . C T 439.012 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 1872959 . A G 1669.85 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 1873954 . G T 2507.6 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 1874710 . G A 1934.03 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 1874993 . CG C 1666.31 . AB=0;AO=63;DP=65;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 1876739 . T G 1544.01 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 1882839 . C T 1149.58 . AB=0;AO=44;DP=46;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 1883443 . C T 1943.52 . AB=0;AO=75;DP=77;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:2:60:75:2250:-197.072,-17.4801,0 +NC_000962.3 1883811 . T C 2076.34 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 1883978 . C T 1988.7 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1885772 . G A 1798.18 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1886263 . C G 2092.45 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 1887284 . G A 1725.55 . AB=0;AO=66;DP=68;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 1887313 . C T 1614.64 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 1889073 . G C 2664.98 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 1890565 . A G 1973.47 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 1894300 . G GGTCTTGCCGC 1799.7 . AB=0;AO=68;DP=71;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1894422 . A G 1960.99 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 1894765 . G A 2275.49 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1897646 . G C 2108.05 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 1900800 . A G 2280.75 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1901493 . T C 2108.69 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 1902156 . G A 2606.35 . AB=0;AO=98;DP=100;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 1906336 . A G 2286.37 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 1907177 . C T 2440.46 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 1907296 . G C 2564.06 . AB=0;AO=98;DP=101;QA=2940;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:98:2940:-259.163,-24.7038,0 +NC_000962.3 1916137 . A G 2372.01 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 1917972 . A G 1739.09 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 1919945 . C T 1712.6 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 1920120 . G T 1855.51 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 1923985 . G A 2129.89 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 1924765 . T C 2476.25 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 1924874 . G C 2526.22 . AB=0;AO=95;DP=102;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:95:2850:-256.455,-28.5979,0 +NC_000962.3 1924959 . T C 2550.47 . AB=0;AO=96;DP=98;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 1931179 . C A 1284.34 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 1931470 . G A 2065.84 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 1931718 . G C 1829.84 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1933988 . G A 2357.55 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 1935695 . T G 2289.17 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 1936525 . G A 2100.93 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 1940307 . G T 1829.84 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 1943535 . G T 2530.11 . AB=0;AO=95;DP=97;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 1943723 . C T 2719.57 . AB=0;AO=102;DP=104;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 1944107 . A G 1856.53 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1944402 . T C 1855.55 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 1945102 . G A 1994.22 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 1946543 . G T 1642.32 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 1950651 . T C 3071.37 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 1950767 . T C 2942.87 . AB=0;AO=111;DP=112;QA=3330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:1:30:111:3330:-296.957,-30.7158,0 +NC_000962.3 1952160 . T C 1431.01 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 1956930 . T G 2905.81 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 1957607 . C T 2531.11 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 1960284 . C A 1704.65 . AB=0;AO=65;DP=68;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:65:1950:-172.775,-17.1684,0 +NC_000962.3 1963383 . G A 2179.79 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 1963890 . C G 1640.98 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 1963957 . T C 1798.92 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 1967237 . C A 2396.05 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 1971725 . G C 2606.35 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 1978807 . G T 2346.4 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 1979026 . C T 1941.04 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 1980325 . G A 3264.4 . AB=0;AO=123;DP=126;QA=3690;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:126:1:30:123:3690:-329.352,-34.6281,0 +NC_000962.3 1983313 . T G 877.715 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 1989370 . C T 1764.27 . AB=0;AO=68;DP=70;QA=2040;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:2:60:68:2040:-178.174,-15.3729,0 +NC_000962.3 1990256 . T G 325.978 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 1992323 . GC G 908.96 . AB=0;AO=35;DP=37;QA=1050;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:35:1050:-94.4579,-10.5361,0 +NC_000962.3 1993808 . A T 1603.3 . AB=0;AO=61;DP=64;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2010614 . G A 2648.33 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 2013943 . G C 1772.35 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2017291 . T C 2175.79 . AB=0;AO=82;DP=84;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2017560 . A T 2612.52 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 2019236 . T G 2776.87 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 2022868 . T C 2048.33 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2023211 . G T 2441.26 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 2028269 . G A 2424.02 . AB=0;AO=91;DP=94;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2028967 . A C 2122.14 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 2030487 . CAT TCA 2179.16 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2030521 . T C 2269.2 . 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A G 2287.35 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2050822 . G C 1386.32 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2051746 . T C 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2052035 . G T 1947.47 . AB=0;AO=75;DP=78;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:2:60:75:2250:-197.072,-17.7801,0 +NC_000962.3 2052687 . G C 2554.19 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2052960 . T TGCAGACCTATGA 2287.77 . AB=0;AO=86;DP=92;QA=2580;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 2055271 . A G 1855.54 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2057774 . 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T C 1532.67 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2072190 . A C 2401.71 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 2074754 . C T 1696.11 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 2078024 . G A 2608.82 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 2083124 . T C 2149.91 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2083610 . G C 2312.18 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2086411 . T C 2988.47 . AB=0;AO=112;DP=113;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 2090306 . G A 1831.82 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2090400 . T TCGCCAACGCCAC 1233.14 . AB=0;AO=50;DP=57;QA=1500;QR=120;RO=4;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:4:120:50:1500:-124.182,-5.45718,0 +NC_000962.3 2091425 . C T 1508.13 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 2091783 . C G 2156.36 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 2091967 . G T 2528.19 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 2092391 . G T 2231.1 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 2092970 . C T 1921.26 . AB=0;AO=73;DP=76;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:73:2190:-194.372,-19.5766,0 +NC_000962.3 2093715 . T C 2368.52 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2094911 . ACAGCGT A 1553.17 . AB=0;AO=59;DP=63;QA=1770;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 2096094 . C T 2487 . AB=0;AO=94;DP=97;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 2096186 . A G 2693.77 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 2096430 . A C 2082.33 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 2097144 . G C 2450.46 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 2103540 . C A 2582.41 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 2104019 . C G 2340.04 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2104779 . C T 2473.25 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 2108141 . T C 1579.62 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2108890 . A C 2021.47 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2109523 . C CG 1800.46 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2110365 . A C 2371.23 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2114734 . G A 2771.88 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 2116903 . C T 1830.33 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2118434 . A G 2262.43 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2118897 . C T 1549.48 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2120796 . T A 2314.37 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2120953 . C G 2340.19 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2122625 . A G 2665.43 . AB=0;AO=100;DP=101;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 2122826 . G A 2297.17 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 2122976 . C G 3171.41 . AB=0;AO=119;DP=120;QA=3570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:120:0:0:119:3570:-321.254,-35.8226,0 +NC_000962.3 2123169 . T G 2709.27 . AB=0;AO=103;DP=105;QA=3090;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:2:60:103:3090:-272.661,-25.909,0 +NC_000962.3 2124766 . C T 1822.84 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2125879 . C T 1962.82 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2128372 . A G 2098.93 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2128870 . A G 1849.87 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2129281 . C A 2213.62 . AB=0;AO=86;DP=89;QA=2580;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:3:90:86:2580:-224.068,-18.3929,0 +NC_000962.3 2130529 . A G 1608.04 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2132062 . C G 2019.21 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2133468 . T TTCGCATGCCGTCACC 1125.33 . AB=0;AO=46;DP=54;QA=1380;QR=120;RO=4;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:54:4:120:46:1380:-113.384,-4.25306,0 +NC_000962.3 2135870 . T C 1859 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2137521 . A ACTCCGATCAC 1800.97 . AB=0;AO=68;DP=71;QA=2040;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2138393 . A G 2474.02 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 2138734 . C T 2552.99 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 2138767 . G C 2398.73 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2143328 . G C 1773.65 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2143523 . C CT 1855.99 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2145878 . A G 960.145 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 2146065 . C CGGCGGTCGCGGCGGGGCGGGCGGTAGAGGCGGCGACGGCGGGCAA 363.678 . AB=0;AO=15;DP=16;QA=450;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 2147022 . A C 1834.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2147641 . C CGTTAGTTCATGCGTA 1669.25 . AB=0;AO=63;DP=65;QA=1890;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:63:1890:-169.988,-18.9649,0 +NC_000962.3 2151678 . G T 2489.78 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2154724 . C A 1514.66 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 2156389 . C G 2334.7 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2156868 . G T 1914.2 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2158109 . T C 1861.45 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 2158563 . GT G 2100.33 . AB=0;AO=79;DP=88;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:79:2370:-213.251,-23.7814,0 +NC_000962.3 2160998 . G A 2394.59 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2161343 . G GT 2193.67 . AB=0;AO=84;DP=91;QA=2520;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:91:2:60:84:2520:-221.368,-20.4894,0 +NC_000962.3 2163087 . C T 2635.99 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 2163493 . AGCA GCCC 940.491 . AB=0;AO=38;DP=39;QA=1140;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:38:1140:-102.585,-11.4391,0 +NC_000962.3 2163504 . G A 1107.46 . AB=0;AO=45;DP=45;QA=1350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1350:-121.782,-13.5464,0 +NC_000962.3 2163790 . A C 513.481 . AB=0;AO=23;DP=25;QA=690;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:1:30:23:690:-59.3914,-4.52511,0 +NC_000962.3 2165256 . T G 1480.65 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 2165286 . A C 1234.63 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2167926 . A G 2310.58 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2167983 . C T 1909.77 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2176778 . CGGCAG C 1431.01 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 2177073 . T C 2470.83 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 2177968 . G T 2207.48 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2183221 . G A 1493.93 . AB=0;AO=58;DP=61;QA=1740;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:2:60:58:1740:-151.178,-12.6626,0 +NC_000962.3 2183792 . G A 2067.47 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2185358 . G A 1726.41 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2197065 . C G 1856.98 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2199052 . C G 2823.92 . AB=0;AO=106;DP=108;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 2199416 . A G 2207.89 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2202939 . A C 2129.23 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2207591 . T TC 3057.67 . AB=0;AO=116;DP=121;QA=3480;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:121:2:60:116:3480:-307.756,-30.1223,0 +NC_000962.3 2209465 . G A 2417.59 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2211826 . A G 2830.34 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 2216370 . G C 2641.07 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 2216443 . C A 2078.85 . AB=0;AO=79;DP=81;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:79:2370:-210.57,-21.3828,0 +NC_000962.3 2218012 . A G 1827.07 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2218488 . G C 2337.67 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2219375 . A G 250.987 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 2219955 . CG C 2183.63 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2220512 . T G 2289.77 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2222308 . T C 1880.3 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2223293 . T C 2232.47 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2237497 . G C 2101.77 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2238930 . A C 2261.23 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2239055 . C T 2335.87 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 2240062 . C G 2377.58 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 2241646 . C T 2206.55 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2241742 . A G 2102.64 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2242808 . G A 2020.11 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2243034 . T G 1750.69 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2246960 . G C 2694.29 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 2247677 . A C 2291.77 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 2249035 . A G 1726.67 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2251999 . A G 2232.47 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2255942 . G T 2256.73 . AB=0;AO=86;DP=88;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 2260100 . C T 1829.59 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2260525 . C T 1625.74 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 2264782 . C A 1461.65 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 2265059 . T G 2932.63 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 2269179 . C T 1944.22 . AB=0;AO=75;DP=77;QA=2250;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:2:60:75:2250:-197.072,-17.4801,0 +NC_000962.3 2269780 . T C 1803.46 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2270102 . A G 1393.05 . AB=0;AO=53;DP=54;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:53:1590:-143.079,-15.9546,0 +NC_000962.3 2281917 . A C 2153.96 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2282376 . CC TT 2450.46 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 2282787 . C T 2557.43 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2285251 . C A 2547.69 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2287121 . A G 2694.97 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 2296042 . G C 3826.17 . AB=0;AO=143;DP=143;QA=4290;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:143:0:0:143:4290:-386.344,-43.0473,0 +NC_000962.3 2297766 . G A 1320.72 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 2300237 . A G 1805.48 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2300546 . A T 1538.59 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2300552 . TGGA GGGG 1482.59 . AB=0;AO=56;DP=57;QA=1680;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:1680:-151.273,-16.8577,0 +NC_000962.3 2301089 . T C 2035.32 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2309356 . G A 2037.95 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2311099 . C G 1662.73 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2311357 . G A 1504.22 . AB=0;AO=57;DP=59;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 2318248 . C G 2104.17 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 2321358 . G C 1682.81 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2326192 . C T 1613.11 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2327903 . ATGAT A 2102.21 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 2328543 . T C 1964.72 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2329393 . C T 1671.36 . AB=0;AO=64;DP=65;QA=1920;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:30:64:1920:-170.075,-16.5674,0 +NC_000962.3 2329533 . A G 1618.76 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2330237 . C T 1929.46 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2331255 . C T 1904 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2331620 . A C 1593.85 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2331789 . G T 2153.54 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2334007 . A G 2614.28 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 2335075 . A G 1912.06 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2335494 . A G 2665.15 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 2335500 . C T 2617.49 . AB=0;AO=99;DP=101;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:99:2970:-264.562,-27.4034,0 +NC_000962.3 2338194 . AC A 1136.86 . AB=0;AO=44;DP=46;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 2339255 . A G 2075.02 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2339719 . AGGGGCGC GGGCGTGG 593.215 . AB=0;AO=23;DP=25;QA=690;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:23:690:-62.0634,-6.92369,0 +NC_000962.3 2340621 . C G 829.182 . AB=0;AO=33;DP=35;QA=990;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:1:30:33:990:-86.3875,-7.53541,0 +NC_000962.3 2341030 . G A 1413.38 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 2341636 . C G 2209.97 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2342403 . C G 1807.5 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 2342649 . A AGGCGTACACAC 1441.48 . AB=0;AO=55;DP=60;QA=1650;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 2344950 . G A 1787.04 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 2345037 . C A 1973.94 . AB=0;AO=75;DP=76;QA=2250;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:1:30:75:2250:-199.771,-19.8787,0 +NC_000962.3 2348446 . C G 1901.24 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2348482 . G T 1889.9 . AB=0;AO=72;DP=74;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:72:2160:-191.672,-19.2756,0 +NC_000962.3 2349634 . C T 1778.66 . AB=0;AO=68;DP=69;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:1:30:68:2040:-180.874,-17.7715,0 +NC_000962.3 2350186 . A G 1829.58 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2357268 . TGCC T 836.144 . AB=0;AO=32;DP=36;QA=960;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:32:960:-86.3875,-9.63296,0 +NC_000962.3 2358029 . T TG 1589.81 . AB=0;AO=60;DP=62;QA=1800;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2358245 . C T 1837.78 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 2361604 . C G 1860.41 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 2362041 . C A 1604.35 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 2367501 . CA C 2473.14 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.034,-27.9958,0 +NC_000962.3 2368564 . TA T 2850.92 . AB=0;AO=107;DP=116;QA=3210;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:107:3210:-288.858,-32.2102,0 +NC_000962.3 2369186 . G C 2910.4 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 2369326 . C G 2524.89 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 2374442 . G A 2313.94 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2376425 . A G 3142.67 . AB=0;AO=118;DP=118;QA=3540;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:118:0:0:118:3540:-318.854,-35.5215,0 +NC_000962.3 2378847 . G A 2018.76 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2379732 . A G 1537.86 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 2379743 . C G 1474.19 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2381034 . C A 2184.68 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2381333 . C T 2129.87 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2384935 . G A 1827.33 . AB=0;AO=69;DP=72;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2386389 . G A 2351.24 . AB=0;AO=89;DP=92;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:89:2670:-237.566,-24.3931,0 +NC_000962.3 2387733 . T C 404.212 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 2388641 . G A 2068.37 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2390299 . A G 2368.04 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2393567 . G A 2911.67 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 2397760 . C G 1818.19 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 2400031 . G A 2391.83 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 2402244 . C T 2717.04 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 2412584 . G A 1688.27 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2413246 . C A 1242.14 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 2415656 . G C 1397.98 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2419142 . A G 1038.58 . AB=0;AO=40;DP=41;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 2421816 . A G 1371.14 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 2421975 . G GGGAA 1212.94 . AB=0;AO=46;DP=47;QA=1380;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:46:1380:-124.182,-13.8474,0 +NC_000962.3 2422687 . C G 1886.06 . AB=0;AO=72;DP=73;QA=2160;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:72:2160:-191.672,-18.9756,0 +NC_000962.3 2424864 . A G 1799.95 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2424925 . A G 1751.29 . AB=0;AO=67;DP=72;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:67:2010:-178.174,-17.7704,0 +NC_000962.3 2425097 . A C 2208.93 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2425471 . T C 2315.53 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2437259 . G T 2450.65 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 2440926 . G T 2640.2 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 2447539 . A G 2936.8 . AB=0;AO=111;DP=112;QA=3330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:1:30:111:3330:-296.957,-30.7158,0 +NC_000962.3 2448288 . G A 2017.8 . AB=0;AO=76;DP=77;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:76:2280:-205.17,-22.8783,0 +NC_000962.3 2448458 . C T 2043.61 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2449295 . G A 2724.89 . AB=0;AO=103;DP=106;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:103:3090:-275.36,-28.6075,0 +NC_000962.3 2450045 . G A 2072.46 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2451081 . C G 2638.42 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 2451927 . G GCAGC 1551.48 . AB=0;AO=61;DP=66;QA=1830;QR=90;RO=3;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:3:90:61:1830:-156.577,-11.1671,0 +NC_000962.3 2462871 . G A 1664.95 . AB=0;AO=63;DP=65;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2464860 . C A 1741.06 . AB=0;AO=68;DP=71;QA=2040;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:3:90:68:2040:-175.475,-12.9743,0 +NC_000962.3 2468471 . G T 1564.65 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2470485 . G T 1377.72 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 2470591 . A C 1399.64 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2470934 . C A 1750.17 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2472956 . T C 1349.72 . AB=0;AO=51;DP=51;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1530:-137.98,-15.3525,0 +NC_000962.3 2473139 . G A 1530.57 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 2478018 . G A 1880.54 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2478541 . C T 2010.09 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2495500 . T C 2496.69 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2499726 . G A 1887.43 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2500892 . C T 2474.92 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 2501148 . T CC 2769.89 . AB=0;AO=104;DP=106;QA=3120;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 2503549 . C A 2035.65 . AB=0;AO=78;DP=80;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:78:2340:-205.17,-18.3832,0 +NC_000962.3 2508395 . G A 1212.42 . AB=0;AO=47;DP=50;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:1:30:47:1410:-124.182,-11.7498,0 +NC_000962.3 2509140 . G C 1268.1 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2509181 . C G 1482.81 . AB=0;AO=56;DP=56;QA=1680;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:1680:-151.478,-16.8577,0 +NC_000962.3 2509722 . A G 2585.94 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 2511712 . G T 1778.44 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2516567 . G C 2265.06 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2517610 . G A 1777.16 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2518132 . C T 2291.36 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2521342 . T C 1358.8 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 2522084 . G A 1992.14 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2523205 . G GCGC 1268.1 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2523486 . G C 1391.48 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 2525722 . CG C 2470.74 . AB=0;AO=93;DP=100;QA=2790;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:93:2790:-251.056,-27.9958,0 +NC_000962.3 2526974 . T C 2156.51 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2528931 . G A 2585.25 . AB=0;AO=97;DP=99;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 2529680 . A G 2538.98 . AB=0;AO=96;DP=99;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:96:2880:-256.463,-26.5003,0 +NC_000962.3 2530434 . G T 2262.78 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 2531742 . A G 2155.87 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2532123 . G C 1364.35 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 2533237 . G A 2610.4 . AB=0;AO=98;DP=101;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 2534562 . GGA G 2371.23 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2536626 . G A 1326.74 . AB=0;AO=51;DP=53;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:1:30:51:1530:-134.98,-12.954,0 +NC_000962.3 2538793 . G A 2308.78 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 2542820 . C CG 1775.19 . AB=0;AO=67;DP=72;QA=2010;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 2544979 . T A 2125.37 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 2547274 . A G 2855.69 . AB=0;AO=107;DP=107;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:107:3210:-289.158,-32.2102,0 +NC_000962.3 2547529 . A AG 2231.94 . AB=0;AO=84;DP=88;QA=2520;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 2553682 . C T 1747.56 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 2562783 . T C 2151.62 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2563958 . A C 2046.09 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2564368 . G GC 2659.4 . AB=0;AO=101;DP=106;QA=3030;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:101:3030:-269.95,-28.0085,0 +NC_000962.3 2566768 . A GC 1848.86 . AB=0;AO=70;DP=74;QA=2100;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 2569593 . A G 1904.63 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2573434 . G T 2990.04 . AB=0;AO=113;DP=115;QA=3390;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:1:30:113:3390:-302.356,-31.6178,0 +NC_000962.3 2573756 . C A 2555.99 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2574598 . C T 1721.56 . AB=0;AO=65;DP=67;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 2575610 . A T 2059.02 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 2577246 . A G 1724.83 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 2578626 . A G 1833.33 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2581109 . C A 2051.84 . AB=0;AO=78;DP=79;QA=2340;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:78:2340:-207.87,-20.7818,0 +NC_000962.3 2582324 . G A 2407.61 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2586127 . A G 2151.81 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2589216 . G C 2154.17 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2592063 . GT G 2664.4 . AB=0;AO=100;DP=105;QA=3000;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 2593192 . G A 2042.41 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2598400 . A G 2870.7 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 2602575 . G A 2774.74 . AB=0;AO=105;DP=106;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 2605293 . G T 2261.42 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2606797 . G GC 1816.78 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2608117 . C A 1963.79 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 2608488 . T C 2129.23 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 2611704 . A C 2880.64 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 2612632 . C A 2886.27 . AB=0;AO=109;DP=110;QA=3270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:1:30:109:3270:-291.558,-30.1137,0 +NC_000962.3 2617402 . A G 2614.81 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 2619271 . T C 2049.44 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2622508 . C T 2097.9 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 2625924 . T C 1666.31 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2626105 . AACC GACG 1878.83 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2626189 . CGC AGT 1990.08 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2626196 . A G 1925.97 . AB=0;AO=73;DP=76;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 2626204 . T C 2176.03 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2626348 . C T 1623.29 . AB=0;AO=62;DP=64;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:62:1860:-164.676,-16.2653,0 +NC_000962.3 2630224 . T TCC 2205.52 . AB=0;AO=83;DP=87;QA=2490;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 2631641 . T G 2021.93 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2632341 . C CA 2260.77 . AB=0;AO=86;DP=95;QA=2580;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:86:2580:-229.467,-23.49,0 +NC_000962.3 2632500 . A G 2802.76 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 2637088 . C T 916.942 . AB=0;AO=37;DP=38;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2637541 . C T 2183.18 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 2641300 . G A 2528.48 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 2641840 . A G 2156.51 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2642383 . C T 2584.16 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 2643653 . G A 2154.15 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2647429 . G A 1831.32 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 2651132 . A G 1536.15 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 2652908 . C G 2013.31 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2656225 . A G 1988.49 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2660319 . C A 2560.12 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2663210 . G A 2593.14 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 2663319 . C A 2507.24 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2677910 . G A 2716.7 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 2680658 . T G 3655.39 . AB=0;AO=137;DP=137;QA=4110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:137:0:0:137:4110:-370.146,-41.2411,0 +NC_000962.3 2688225 . G C 2350.85 . AB=0;AO=89;DP=90;QA=2670;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:30:89:2670:-237.566,-24.0931,0 +NC_000962.3 2691713 . T C 2153.51 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2693194 . CG C 731.464 . AB=0;AO=29;DP=32;QA=870;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:29:870:-78.2524,-8.72987,0 +NC_000962.3 2693377 . T C 312.377 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 2694026 . C T 1161.67 . AB=0;AO=45;DP=46;QA=1350;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:1:30:45:1350:-118.783,-10.8478,0 +NC_000962.3 2695378 . C G 3396.39 . AB=0;AO=127;DP=127;QA=3810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:0:0:127:3810:-343.15,-38.2308,0 +NC_000962.3 2696977 . G C 2540.23 . AB=0;AO=96;DP=99;QA=2880;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:96:2880:-256.463,-26.5003,0 +NC_000962.3 2704291 . G A 1941.52 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2704884 . A ACAGCGACCATATCGCCGAGCT 1155.51 . AB=0;AO=44;DP=50;QA=1320;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 2705561 . A G 1985.92 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2709795 . A G 2178.95 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2712913 . C A 1267.38 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 2713795 . C T 1800.72 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2718852 . T G 2690.94 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 2721562 . C G 2233.71 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2723506 . T C 2211 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 2724180 . TCACGATCGGGTCTCCTCTAG T 1156.28 . AB=0;AO=44;DP=46;QA=1320;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 2726051 . G A 2361.44 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 2727037 . A T 3526.36 . AB=0;AO=132;DP=133;QA=3960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:133:0:0:132:3960:-356.348,-39.736,0 +NC_000962.3 2731741 . G A 2805.96 . AB=0;AO=106;DP=107;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:1:30:106:3180:-283.459,-29.2106,0 +NC_000962.3 2734074 . T C 1453.27 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 2737572 . C A 1066.16 . AB=0;AO=43;DP=46;QA=1290;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:3:90:43:1290:-107.984,-5.44859,0 +NC_000962.3 2739588 . G A 2150.32 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 2740693 . T C 1960.27 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2745739 . G A 2559.58 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2745839 . G A 2380.73 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2751072 . G T 2158.68 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 2751804 . C T 1727.9 . AB=0;AO=66;DP=67;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:1:30:66:1980:-175.475,-17.1694,0 +NC_000962.3 2752698 . C A 2431.93 . AB=0;AO=92;DP=93;QA=2760;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:92:2760:-245.664,-24.9962,0 +NC_000962.3 2755112 . G A 1830.83 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2759534 . C G 1864.46 . AB=0;AO=72;DP=74;QA=2160;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:72:2160:-188.973,-16.577,0 +NC_000962.3 2760152 . A G 2396.88 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2764206 . A G 2182.16 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2764939 . G A 1403.93 . AB=0;AO=55;DP=57;QA=1650;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:2:60:55:1650:-143.079,-11.4595,0 +NC_000962.3 2772960 . G A 2480.32 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 2773181 . C T 1909.06 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2773955 . G C 1592.24 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 2779136 . T C 2500.64 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2786952 . A G 2264.38 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 2790458 . A C 2728.98 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 2791079 . C T 2688.9 . AB=0;AO=101;DP=103;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:101:3030:-272.661,-30.404,0 +NC_000962.3 2791098 . C T 2679.58 . AB=0;AO=102;DP=104;QA=3060;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:2:60:102:3060:-269.961,-25.6079,0 +NC_000962.3 2791257 . A T 2274.26 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 2791475 . A G 1595.55 . AB=0;AO=61;DP=62;QA=1830;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:1:30:61:1830:-161.977,-15.6643,0 +NC_000962.3 2795400 . C A 751.209 . AB=0;AO=29;DP=29;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:29:870:-78.5886,-8.72987,0 +NC_000962.3 2796131 . GC G 1074.06 . AB=0;AO=41;DP=45;QA=1230;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 2796842 . A AC 595.724 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 2799488 . CCGCAA C 1990.09 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 2803867 . G C 586.802 . AB=0;AO=23;DP=25;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:25:0:0:23:690:-62.091,-6.92369,0 +NC_000962.3 2804817 . C T 613.91 . AB=0;AO=25;DP=27;QA=750;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:1:30:25:750:-64.7906,-5.12717,0 +NC_000962.3 2807486 . C A 2761.04 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 2809621 . T C 1937.58 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 2809895 . G A 2152.68 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2817158 . C A 2454.02 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 2818837 . A G 2987.15 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 2821342 . C T 2045.11 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 2824432 . G A 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2825466 . G A 2512.87 . AB=0;AO=95;DP=97;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 2827984 . G T 2323.2 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 2828019 . T C 2264.26 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 2828104 . C T 2105.46 . AB=0;AO=80;DP=82;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:80:2400:-213.269,-21.6838,0 +NC_000962.3 2830525 . C A 2209.05 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 2841022 . A G 1669.04 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 2847281 . A G 1876.41 . AB=0;AO=71;DP=72;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:71:2130:-191.672,-21.3731,0 +NC_000962.3 2855259 . A G 3234.29 . AB=0;AO=122;DP=124;QA=3660;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:124:1:30:122:3660:-326.653,-34.3271,0 +NC_000962.3 2858669 . G T 1987.77 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2865760 . A G 1966.32 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 2865882 . T C 2417.77 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 2867298 . C A 2801.05 . AB=0;AO=106;DP=109;QA=3180;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:1:30:106:3180:-283.459,-29.5106,0 +NC_000962.3 2867347 . A G 2559.58 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 2869242 . T C 1884.52 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 2870386 . C T 2477.36 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 2873093 . G GCCA 1487.46 . AB=0;AO=57;DP=73;QA=1710;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:57:1710:-151.178,-14.7601,0 +NC_000962.3 2878980 . C T 2322.22 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 2880431 . G C 2416.59 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 2880702 . G C 2878.08 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 2881244 . A G 2557.48 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 2881597 . AG A 2658.51 . AB=0;AO=100;DP=102;QA=3000;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 2886570 . A G 2314.34 . AB=0;AO=87;DP=89;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2888201 . T C 2046.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2889633 . T C 2151.41 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 2891267 . C T 2070.47 . AB=0;AO=78;DP=79;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 2891728 . A G 2017.84 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2894208 . G A 2052.46 . AB=0;AO=79;DP=83;QA=2370;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:2:60:79:2370:-207.87,-18.9842,0 +NC_000962.3 2894594 . G A 2478.56 . AB=0;AO=94;DP=95;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:1:30:94:2820:-251.064,-25.5983,0 +NC_000962.3 2894642 . A G 2495.98 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 2897528 . G A 1831.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 2897871 . A G 2506.14 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 2899018 . C CG 2148.1 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.639,-24.3834,0 +NC_000962.3 2899890 . G T 2961.77 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 2907840 . T G 2867.19 . AB=0;AO=109;DP=112;QA=3270;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:2:60:109:3270:-288.858,-28.0151,0 +NC_000962.3 2910461 . G T 2172.64 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 2911293 . C G 1661.33 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 2912294 . T G 2369.69 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 2913880 . G A 1577.76 . AB=0;AO=60;DP=61;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 2915111 . G T 2000.96 . AB=0;AO=76;DP=79;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:76:2280:-202.471,-20.4797,0 +NC_000962.3 2918753 . C T 1911.2 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 2922096 . GGCCGGCGGC G 873.237 . AB=0;AO=34;DP=34;QA=1020;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1020:-92.0283,-10.235,0 +NC_000962.3 2922984 . T C 755.355 . AB=0;AO=29;DP=32;QA=870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:29:870:-78.2887,-8.72987,0 +NC_000962.3 2923119 . T TGGCGGCACC 962 . AB=0;AO=37;DP=41;QA=1110;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 2923391 . T C 1292.93 . AB=0;AO=49;DP=50;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 2925594 . G A 2764.24 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 2925683 . G A 2333.56 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 2925962 . T C 2627.07 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 2926882 . C T 2393.43 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2927511 . G T 1792.84 . AB=0;AO=68;DP=71;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 2927939 . T C 2229.16 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2939373 . G C 2871.43 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 2939657 . T C 2046.76 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 2940608 . C T 2387.26 . AB=0;AO=90;DP=92;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 2948650 . T C 1616.04 . AB=0;AO=61;DP=64;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 2949025 . A G 1933.01 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 2953307 . G T 2571.68 . AB=0;AO=99;DP=103;QA=2970;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:3:90:99:2970:-259.163,-22.6062,0 +NC_000962.3 2954439 . T C 2721.05 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 2954859 . C T 2314.14 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 2955233 . C T 2738.31 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 2957546 . T G 2018.3 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 2957568 . CT C 1847.52 . AB=0;AO=70;DP=71;QA=2100;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:70:2100:-188.913,-21.0721,0 +NC_000962.3 2959324 . A G 2165.67 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 2960857 . C A 693.808 . AB=0;AO=27;DP=27;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:27:0:0:27:810:-73.1894,-8.12781,0 +NC_000962.3 2961099 . G A 523.351 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 2961605 . C G 325.978 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 2964759 . G A 1986.4 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 2983095 . A G 773.168 . AB=0;AO=33;DP=36;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 2984740 . A G 1775.11 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 2985216 . G A 2213.6 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 2987918 . G A 1686.03 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 2988630 . C G 2583.98 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 2989683 . C T 2897.02 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 2992564 . G A 1915.63 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 2993523 . T C 1433.55 . AB=0;AO=55;DP=56;QA=1650;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:55:1650:-145.779,-13.8581,0 +NC_000962.3 2994187 . T C 1748.73 . AB=0;AO=66;DP=69;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 2994964 . C T 2242.02 . AB=0;AO=86;DP=89;QA=2580;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:2:60:86:2580:-226.767,-21.0914,0 +NC_000962.3 3000362 . T C 2613.23 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 3003115 . C G 2938.27 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 3005185 . G T 2502.1 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3006898 . G A 1729.73 . AB=0;AO=66;DP=68;QA=1980;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:30:66:1980:-175.475,-17.4694,0 +NC_000962.3 3007238 . A G 1564.97 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3009692 . A G 2178.11 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3010420 . A G 2560.66 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3015119 . CT C 2449.9 . AB=0;AO=92;DP=105;QA=2760;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3015379 . G A 2226.69 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3017465 . T C 2451.77 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3021283 . G A 2667.4 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3022811 . G A 2933.03 . AB=0;AO=111;DP=112;QA=3330;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:1:30:111:3330:-296.957,-30.7158,0 +NC_000962.3 3025431 . C T 2444.45 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3027606 . C G 2041.06 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3027798 . T C 2369.01 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3030382 . G A 2225.75 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3031168 . A G 2046.76 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3031285 . A T 1508.13 . AB=0;AO=58;DP=60;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:58:1740:-153.878,-15.0612,0 +NC_000962.3 3037367 . C T 2664.05 . AB=0;AO=100;DP=102;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 3037377 . T C 2609.88 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3040078 . C T 1894.39 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3041871 . G T 1821.04 . AB=0;AO=71;DP=76;QA=2130;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:3:90:71:2130:-183.573,-14.1774,0 +NC_000962.3 3053973 . C T 1684.47 . AB=0;AO=64;DP=66;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3054081 . A G 1959.79 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3054321 . A G 1292.04 . AB=0;AO=50;DP=50;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:50:0:0:50:1500:-135.28,-15.0515,0 +NC_000962.3 3064632 . G A 1652.29 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3069167 . A G 1741.29 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3069805 . G C 2399.5 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 3074830 . C T 2097.03 . AB=0;AO=79;DP=82;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3078178 . C T 2339.21 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 3078826 . G A 2901.37 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 3079685 . G T 2313.13 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 3079877 . A G 1994.45 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3080282 . C A 2366.78 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3080795 . A G 2665.33 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3081353 . T G 1481.11 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 3084944 . C G 2307.99 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3085119 . G GC 2400.95 . AB=0;AO=91;DP=101;QA=2730;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:91:2730:-242.965,-24.9952,0 +NC_000962.3 3086261 . T C 2438.25 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3086788 . T C 2288.37 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3088625 . A G 1569.56 . AB=0;AO=60;DP=61;QA=1800;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:1:30:60:1800:-159.277,-15.3633,0 +NC_000962.3 3097349 . C T 2230.7 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3099657 . G A 2282.75 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3103682 . T C 1512.01 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3104189 . A G 2524.3 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 3105144 . C A 2145.54 . AB=0;AO=82;DP=86;QA=2460;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:2:60:82:2460:-215.969,-19.8873,0 +NC_000962.3 3107675 . A G 1842.51 . AB=0;AO=71;DP=73;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:30:71:2130:-188.973,-18.9746,0 +NC_000962.3 3112877 . G A 1740.64 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3113872 . A T 2285.57 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3114814 . G A 3260.75 . AB=0;AO=123;DP=127;QA=3690;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:1:30:123:3690:-329.352,-34.6281,0 +NC_000962.3 3115964 . A C 2295.98 . AB=0;AO=87;DP=89;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:87:2610:-232.166,-23.791,0 +NC_000962.3 3118000 . A G 2208.42 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 3118449 . A G 1781.01 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3119513 . C T 250.68 . AB=0;AO=10;DP=10;QA=300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:10:0:0:10:300:-27.2961,-3.0103,0 +NC_000962.3 3131469 . T TTGTCGGCGA 1651.94 . AB=0;AO=67;DP=76;QA=2010;QR=120;RO=4;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:76:4:120:67:2010:-170.075,-10.5747,0 +NC_000962.3 3132956 . G T 1522.33 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3132963 . ACGT GCTG 1407.06 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3132975 . C G 1598.11 . AB=0;AO=63;DP=64;QA=1890;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:1:30:63:1890:-167.376,-16.2664,0 +NC_000962.3 3133054 . CG GC 2059.09 . AB=0;AO=78;DP=81;QA=2340;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 3133536 . T C 2420 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3135852 . G T 660.228 . AB=0;AO=27;DP=29;QA=810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:29:0:0:27:810:-72.8895,-8.12781,0 +NC_000962.3 3135859 . ACGT GCTG 547.032 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 3135871 . C G 557.72 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 3137058 . G A 3223.55 . AB=0;AO=121;DP=122;QA=3630;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:0:0:121:3630:-326.653,-36.4246,0 +NC_000962.3 3137237 . T C 2704.06 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 3137541 . ATCGGCGCGATCAACGGCGCCGCGGTCACCGGCGGGCTCG A 1453.39 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3137681 . G A 1885.01 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3138245 . G A 2024.41 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3144417 . G A 2445.77 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3152985 . A C 2371.62 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3160075 . G A 2249.02 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3162804 . AC CG 454.14 . AB=0;AO=18;DP=19;QA=540;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:18:540:-48.593,-5.41854,0 +NC_000962.3 3163612 . G C 493.488 . AB=0;AO=20;DP=23;QA=600;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:1:30:20:600:-51.2926,-3.62202,0 +NC_000962.3 3163646 . G T 519.324 . AB=0;AO=21;DP=22;QA=630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:1:30:21:630:-53.9922,-3.62309,0 +NC_000962.3 3169993 . A G 1724.03 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3174496 . A G 2391.72 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 3177884 . C A 2737.08 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3180988 . C A 2128.31 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 3186860 . T G 1662.69 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3188428 . C T 1881.1 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3188769 . A G 1714.67 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3189242 . A G 2479.21 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3189580 . T C 1047.68 . AB=0;AO=40;DP=42;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 3190145 . TC T 1676.85 . AB=0;AO=64;DP=67;QA=1920;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3190342 . G A 1551.67 . AB=0;AO=59;DP=61;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3194241 . C CG 2226.59 . AB=0;AO=84;DP=87;QA=2520;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3194392 . T A 1609.27 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3195731 . T C 1789.98 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3197917 . G A 1375.1 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3200304 . A G 2036.6 . AB=0;AO=77;DP=78;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3200530 . T C 1240.32 . AB=0;AO=47;DP=47;QA=1410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:47:0:0:47:1410:-127.182,-14.1484,0 +NC_000962.3 3202629 . C T 2153.09 . AB=0;AO=81;DP=82;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 3214481 . G T 2404.92 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3216553 . G A 1886.46 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3220545 . C T 2730.82 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3221093 . C T 2294.79 . AB=0;AO=87;DP=88;QA=2610;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:1:30:87:2610:-232.166,-23.4911,0 +NC_000962.3 3226181 . A C 2207.9 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3227768 . C A 2477.73 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3228143 . G T 981.847 . AB=0;AO=38;DP=38;QA=1140;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:38:0:0:38:1140:-102.885,-11.4391,0 +NC_000962.3 3229692 . G A 2697.55 . AB=0;AO=102;DP=103;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:1:30:102:3060:-272.661,-28.0065,0 +NC_000962.3 3233605 . G A 1824.08 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3241244 . G A 1855.76 . AB=0;AO=70;DP=73;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3243197 . G A 2286.75 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3244414 . A G 2606.15 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 3247089 . G A 2028.74 . AB=0;AO=78;DP=80;QA=2340;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:2:60:78:2340:-205.17,-18.3832,0 +NC_000962.3 3247316 . C G 1714.66 . AB=0;AO=65;DP=66;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:65:1950:-175.475,-19.567,0 +NC_000962.3 3247851 . GCCCGG ACTCGC 1640.09 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3247865 . GCAAA TAGGG 1577.68 . AB=0;AO=60;DP=62;QA=1800;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 3247874 . GTTT ATTC 1602.95 . AB=0;AO=61;DP=63;QA=1830;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3247883 . T C 1771.71 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 3248074 . GC AT 1559.33 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3254758 . A C 2367.36 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3254880 . G T 2202.4 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 3256494 . A G 3046.05 . AB=0;AO=114;DP=114;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:114:3420:-308.055,-34.3174,0 +NC_000962.3 3257634 . C T 2908.67 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 3260430 . C T 2233.37 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3266030 . A G 1492.98 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3269245 . G C 2072.81 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 3269581 . A G 2580.96 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 3270784 . A G 2956.19 . AB=0;AO=111;DP=111;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:111:3330:-299.957,-33.4143,0 +NC_000962.3 3271037 . A G 2255.7 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3273138 . C G 2735.12 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3274545 . G A 2781.14 . AB=0;AO=105;DP=106;QA=3150;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:1:30:105:3150:-280.759,-28.9096,0 +NC_000962.3 3280132 . G A 2767.39 . AB=0;AO=104;DP=105;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3120:-280.759,-31.3071,0 +NC_000962.3 3293423 . A G 1714.48 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3293601 . T C 1640.64 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3295124 . C T 1534.36 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 3296371 . G GCCGCGGC 1378.67 . AB=0;AO=53;DP=55;QA=1590;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:55:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 3296721 . C G 2154.39 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3296843 . A G 1988.24 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 3299400 . A C 2475.23 . AB=0;AO=94;DP=96;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 3299413 . G A 2550.11 . AB=0;AO=96;DP=98;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 3302683 . C T 2585.92 . AB=0;AO=98;DP=99;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:98:2940:-261.862,-26.8024,0 +NC_000962.3 3306163 . CGGCACTGTGGCG C 1664.39 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3306594 . T G 1800.91 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3308446 . T C 2564.33 . AB=0;AO=97;DP=98;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 3308606 . G A 2809.07 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 3311119 . G C 1832.58 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3312942 . G A 3341.25 . AB=0;AO=125;DP=125;QA=3750;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:125:0:0:125:3750:-337.751,-37.6288,0 +NC_000962.3 3314243 . G A 2153.32 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3314412 . A G 2291.77 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3315154 . G A 2178.95 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3326150 . A G 2552.8 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 3326554 . A C 2185.06 . AB=0;AO=83;DP=84;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:30:83:2490:-221.368,-22.287,0 +NC_000962.3 3327780 . C T 1754.33 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3328495 . G C 1963.53 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3330403 . G A 2319.12 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 3330725 . C T 1827.34 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3330952 . T G 1645.08 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3331361 . ACG A 2092 . AB=0;AO=79;DP=82;QA=2370;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 3335708 . G C 1989.17 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3336528 . T A 320.75 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3336825 . T C 1007.78 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3338603 . G C 1834.82 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3347293 . C T 2743.88 . AB=0;AO=105;DP=108;QA=3150;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:2:60:105:3150:-278.06,-26.811,0 +NC_000962.3 3350883 . C G 1746.13 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3351472 . G A 1328.42 . AB=0;AO=51;DP=52;QA=1530;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:1:30:51:1530:-134.98,-12.654,0 +NC_000962.3 3351757 . CG C 1662.73 . AB=0;AO=63;DP=68;QA=1890;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3352932 . C G 1562.23 . AB=0;AO=59;DP=60;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3358235 . A T 2534.38 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3363338 . A G 1710.09 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3364142 . G A 1611.14 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3365841 . G A 2435.79 . AB=0;AO=92;DP=94;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3366409 . GATCACATCACC G 2529.02 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 3367765 . G A 1717.93 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3369869 . G T 1897.27 . AB=0;AO=73;DP=77;QA=2190;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:2:60:73:2190:-191.672,-17.178,0 +NC_000962.3 3371260 . T C 1672.04 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3377786 . A G 1548.43 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3378828 . C A 2695.14 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 3379390 . A C 1529.62 . AB=0;AO=60;DP=63;QA=1800;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:3:90:60:1800:-153.878,-10.5661,0 +NC_000962.3 3379708 . GAGCG CAGCC 576.865 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 3379718 . T C 581.444 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 3379726 . CCCCGGCCAAC ACCCCGTCACA 549.865 . AB=0;AO=22;DP=23;QA=660;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:22:660:-59.3914,-6.62266,0 +NC_000962.3 3379742 . T C 660.817 . AB=0;AO=26;DP=26;QA=780;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:26:0:0:26:780:-70.4898,-7.82678,0 +NC_000962.3 3379751 . A C 664.093 . AB=0;AO=27;DP=28;QA=810;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:28:1:30:27:810:-70.1899,-5.42927,0 +NC_000962.3 3379757 . A C 795.166 . AB=0;AO=31;DP=31;QA=930;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:31:0:0:31:930:-83.9879,-9.33193,0 +NC_000962.3 3379763 . G A 825.562 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3379784 . CCCCC ACCCG 1035.46 . AB=0;AO=40;DP=42;QA=1200;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 3380226 . A G 1101.93 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 3382598 . C T 943.972 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3383612 . C T 2346.31 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3385542 . C G 2345.14 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3392523 . G A 1723.77 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3393361 . C G 2009.84 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3397850 . G GT 1595.26 . AB=0;AO=61;DP=63;QA=1830;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:61:1830:-161.977,-15.9643,0 +NC_000962.3 3401850 . G A 2338.42 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 3401871 . A G 2340.83 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 3402816 . C T 2871.81 . AB=0;AO=109;DP=110;QA=3270;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:1:30:109:3270:-291.558,-30.1137,0 +NC_000962.3 3403250 . C T 2384.02 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 3404376 . C G 2553.47 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3406798 . G A 2216.02 . AB=0;AO=84;DP=87;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 3407028 . C T 2235.01 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3415180 . ACACCTAGGGGGTGG A 1687.21 . AB=0;AO=65;DP=68;QA=1950;QR=60;RO=2;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:68:2:60:65:1950:-170.075,-14.7698,0 +NC_000962.3 3415332 . A G 2097.18 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3420825 . A G 2368.33 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3424462 . C T 2412.08 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 3425854 . C T 2287.86 . AB=0;AO=88;DP=92;QA=2640;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:3:90:88:2640:-229.467,-19.2949,0 +NC_000962.3 3427632 . C T 2613.93 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 3428917 . C A 2100.07 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 3429540 . C G 2507.61 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 3431407 . G T 2068.76 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 3435307 . A C 2452.9 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3440464 . TGTGG GGTGC 2086.28 . AB=0;AO=79;DP=83;QA=2370;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:79:2370:-213.316,-23.7814,0 +NC_000962.3 3440542 . A G 2039.99 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3442240 . C A 2615.33 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 3444903 . C CCGG 1261.14 . AB=0;AO=51;DP=56;QA=1530;QR=120;RO=4;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:4:120:51:1530:-126.882,-5.75821,0 +NC_000962.3 3447480 . A C 2642.64 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 3448714 . G C 1791.78 . AB=0;AO=68;DP=70;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 3450725 . T C 2413.22 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 3451002 . A G 2662.2 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3453382 . C T 1855.8 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3454263 . C G 2100.68 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3455686 . G C 2719.74 . AB=0;AO=102;DP=103;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:102:3060:-275.36,-30.7051,0 +NC_000962.3 3456666 . A G 2230.29 . AB=0;AO=84;DP=86;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 3460765 . G C 2203.71 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3461765 . G T 1362.35 . AB=0;AO=53;DP=54;QA=1590;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:1:30:53:1590:-140.38,-13.2561,0 +NC_000962.3 3462135 . G C 1642.08 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3462178 . G A 1699.86 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3464629 . A G 2534.56 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3466919 . C G 2423.26 . AB=0;AO=93;DP=96;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:93:2790:-248.364,-25.5972,0 +NC_000962.3 3467465 . C G 2451.96 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3470149 . C T 2928.83 . AB=0;AO=110;DP=113;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 3473996 . G GA 2473.62 . AB=0;AO=93;DP=95;QA=2790;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 3474597 . C A 2611.98 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3475159 . A G 2692.41 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 3478588 . G A 3070.31 . AB=0;AO=115;DP=115;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:115:0:0:115:3450:-310.755,-34.6185,0 +NC_000962.3 3479373 . C A 2654.61 . AB=0;AO=102;DP=106;QA=3060;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:3:90:102:3060:-267.261,-23.5093,0 +NC_000962.3 3479561 . G A 2750.2 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3480474 . G A 2772.23 . AB=0;AO=104;DP=104;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3120:-281.059,-31.3071,0 +NC_000962.3 3480789 . T C 3126.44 . AB=0;AO=118;DP=119;QA=3540;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:119:1:30:118:3540:-315.854,-32.823,0 +NC_000962.3 3481475 . G A 774.191 . AB=0;AO=33;DP=35;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:33:990:-89.0871,-9.93399,0 +NC_000962.3 3486977 . A G 2288.77 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3494295 . GGC G 2228.75 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3494820 . CG C 2500.94 . AB=0;AO=94;DP=96;QA=2820;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 3496264 . C T 2798.49 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 3497586 . C G 2647.29 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 3498418 . A G 2715.29 . AB=0;AO=103;DP=105;QA=3090;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:1:30:103:3090:-275.36,-28.6075,0 +NC_000962.3 3503895 . C T 2023.11 . AB=0;AO=77;DP=78;QA=2310;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:30:77:2310:-205.17,-20.4808,0 +NC_000962.3 3505005 . A C 1993.94 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 3509091 . G C 2521.28 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3510120 . T G 2392.22 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 3518167 . A G 2150.76 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3518555 . A G 2127.3 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 3521044 . A G 2367.55 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3526986 . A G 3040.93 . AB=0;AO=114;DP=116;QA=3420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:114:3420:-307.756,-34.3174,0 +NC_000962.3 3527483 . T C 2488.47 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3527948 . AGCCGGCGTTTCCGAAGCCCGTGTTGGTGTC A 1277.87 . AB=0;AO=49;DP=57;QA=1470;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:49:1470:-132.249,-14.7505,0 +NC_000962.3 3528971 . TCGC T 2553.06 . AB=0;AO=96;DP=100;QA=2880;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:96:2880:-259.134,-28.8989,0 +NC_000962.3 3530145 . C A 1858.94 . AB=0;AO=70;DP=72;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:70:2100:-188.973,-21.0721,0 +NC_000962.3 3530955 . C G 1994.91 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3533759 . G A 2534.74 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3536008 . G T 1749.25 . AB=0;AO=66;DP=67;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3539139 . CG C 1931.13 . AB=0;AO=73;DP=80;QA=2190;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:73:2190:-197.064,-21.9752,0 +NC_000962.3 3542126 . G C 2340.19 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 3555699 . A G 3211.31 . AB=0;AO=121;DP=122;QA=3630;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:122:1:30:121:3630:-323.953,-33.7261,0 +NC_000962.3 3556275 . A G 2816.23 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 3557634 . G A 1306.88 . AB=0;AO=50;DP=51;QA=1500;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1500:-134.98,-15.0515,0 +NC_000962.3 3560645 . C T 2425.51 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3566923 . A ACGCTTGTCGG 1667.3 . AB=0;AO=69;DP=84;QA=2070;QR=240;RO=8;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:84:8:240:69:2070:-164.676,-1.58243,0 +NC_000962.3 3571834 . T G 2427.02 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 3573636 . T C 1981.99 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3574258 . G A 1957.25 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3577958 . A G 1830.34 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3580636 . CT C 1953.51 . AB=0;AO=74;DP=76;QA=2220;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3581414 . A G 2368.43 . AB=0;AO=89;DP=92;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3590686 . G GC 2287.97 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3591063 . T C 2910.86 . AB=0;AO=110;DP=111;QA=3300;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:110:3300:-294.257,-30.4148,0 +NC_000962.3 3597682 . C T 2315.33 . AB=0;AO=87;DP=89;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 3604821 . G C 1559.97 . AB=0;AO=59;DP=59;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:1770:-159.577,-17.7608,0 +NC_000962.3 3606394 . T C 2479.77 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3610391 . A AC 2103.29 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3610668 . GGGGTC G 2541.57 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3614982 . T C 2826.43 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 3617763 . ACCGGCCGGCACT A 1537.41 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3621423 . A G 2396.05 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 3622441 . A C 2082.33 . AB=0;AO=79;DP=80;QA=2370;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:30:79:2370:-210.57,-21.0828,0 +NC_000962.3 3624486 . T C 2048.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3625065 . T G 2666.36 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 3629776 . A G 2001.41 . AB=0;AO=76;DP=79;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:30:76:2280:-202.471,-20.4797,0 +NC_000962.3 3638093 . G A 1826.82 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 3639650 . C A 2321.63 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 3647041 . A G 2040.05 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3647591 . A G 2549.18 . AB=0;AO=96;DP=97;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:96:2880:-259.163,-28.8989,0 +NC_000962.3 3650996 . T C 1691.27 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3657710 . C G 3096.45 . AB=0;AO=116;DP=116;QA=3480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:116:3480:-313.455,-34.9195,0 +NC_000962.3 3658266 . C G 1673.13 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3661802 . C T 1759.53 . AB=0;AO=67;DP=71;QA=2010;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:67:2010:-178.174,-17.7704,0 +NC_000962.3 3670040 . C T 2365.13 . AB=0;AO=89;DP=90;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3670118 . G T 2372.01 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 3671532 . G C 1858.5 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3671843 . A C 1909.42 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3672105 . G C 1427.38 . AB=0;AO=54;DP=56;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:54:1620:-145.779,-16.2556,0 +NC_000962.3 3678091 . G A 2157.15 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3679949 . A G 1698.25 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 3681548 . A C 1994.68 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3683237 . G T 2744.53 . AB=0;AO=103;DP=104;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3683282 . C T 2579.92 . AB=0;AO=97;DP=99;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:97:2910:-261.862,-29.1999,0 +NC_000962.3 3683715 . T G 2566.57 . AB=0;AO=97;DP=98;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:30:97:2910:-259.163,-26.5014,0 +NC_000962.3 3687372 . A G 2263.04 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3689523 . G T 1671.49 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 3690016 . A G 1612.66 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3693681 . A C 2665.09 . AB=0;AO=100;DP=102;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 3696181 . A G 2122.49 . AB=0;AO=81;DP=83;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:81:2430:-215.969,-21.9849,0 +NC_000962.3 3697708 . A G 2937.49 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 3704261 . C A 2448.78 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3704596 . G C 2612.69 . AB=0;AO=98;DP=99;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3710202 . G A 1588.44 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 3714211 . G T 2000.28 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 3714757 . A C 2045.42 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3715840 . G A 2254.49 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 3718357 . C T 1912.16 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3721806 . G C 1993.21 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 3723901 . G GT 2217.04 . AB=0;AO=84;DP=93;QA=2520;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:93:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 3730411 . G A 1701.38 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 3730426 . G A 1555.2 . AB=0;AO=61;DP=62;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3730466 . A G 1079.41 . AB=0;AO=44;DP=44;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:44:1320:-119.083,-13.2453,0 +NC_000962.3 3730582 . G A 244.966 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 3730978 . G A 1452.45 . AB=0;AO=55;DP=56;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3730993 . A G 1291.19 . AB=0;AO=49;DP=57;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:49:1470:-132.281,-14.7505,0 +NC_000962.3 3732118 . GAAGG CAAGA 1022.14 . AB=0;AO=40;DP=43;QA=1200;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 3733684 . A G 2449.15 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 3734121 . C T 2151.62 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 3735749 . A G 1014.34 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3736179 . G A 1036.2 . AB=0;AO=41;DP=43;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 3736628 . T G 964.718 . AB=0;AO=37;DP=39;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:39:0:0:37:1110:-99.8856,-11.1381,0 +NC_000962.3 3738416 . TG T 273.085 . AB=0;AO=11;DP=16;QA=330;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:11:330:-29.6957,-3.31133,0 +NC_000962.3 3738516 . C CTGCCGCCGCTGCCGCCGT 236.888 . AB=0;AO=10;DP=13;QA=300;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:10:300:-26.9961,-3.0103,0 +NC_000962.3 3740168 . G A 1070.72 . AB=0;AO=41;DP=44;QA=1230;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:44:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 3740430 . C T 396.74 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 3743549 . A G 2253.13 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3745483 . C A 776.074 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 3745816 . C T 2174.33 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3745826 . G A 2126.19 . AB=0;AO=81;DP=82;QA=2430;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:81:2430:-215.969,-21.6849,0 +NC_000962.3 3746409 . A G 1371.77 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 3746660 . A C 1840.48 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 3746702 . CGAC GCTG 1694.18 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 3746845 . T C 1857.77 . AB=0;AO=70;DP=70;QA=2100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2100:-189.273,-21.0721,0 +NC_000962.3 3746854 . T C 1804.98 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 3746869 . GGCCAAT ACCCCAG 1534.41 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3750177 . AA TC 2489.46 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 3750185 . CGAC GGTG 2202.97 . AB=0;AO=83;DP=93;QA=2490;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:83:2490:-224.062,-24.9855,0 +NC_000962.3 3750193 . G A 2480.03 . AB=0;AO=94;DP=96;QA=2820;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:94:2820:-251.064,-25.8982,0 +NC_000962.3 3750205 . CGACAT TGACGG 2609.17 . AB=0;AO=98;DP=101;QA=2940;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 3750407 . G C 3921.96 . AB=0;AO=147;DP=149;QA=4410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:149:0:0:147:4410:-396.843,-44.2514,0 +NC_000962.3 3750417 . AAGCT TAGCC 3759.04 . AB=0;AO=141;DP=149;QA=4230;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:149:0:0:141:4230:-380.645,-42.4452,0 +NC_000962.3 3751397 . C T 2091.47 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3752207 . A G 2098.94 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3752771 . G A 1813.8 . AB=0;AO=69;DP=69;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2070:-186.573,-20.7711,0 +NC_000962.3 3753116 . C T 1553.75 . AB=0;AO=59;DP=62;QA=1770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:59:1770:-159.277,-17.7608,0 +NC_000962.3 3753164 . T G 1750.29 . AB=0;AO=66;DP=68;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3753414 . TC G 890.759 . AB=0;AO=35;DP=36;QA=1050;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:35:1050:-94.4863,-10.5361,0 +NC_000962.3 3757515 . A G 1910.49 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3762346 . G A 2088.89 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3762556 . G A 2049.44 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 3763539 . C T 2417.01 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 3763877 . T C 1553.8 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 3769709 . AG GA 1474.25 . AB=0;AO=56;DP=61;QA=1680;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:56:1680:-151.178,-16.8577,0 +NC_000962.3 3770325 . C T 2147.88 . AB=0;AO=84;DP=88;QA=2520;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:3:90:84:2520:-218.668,-18.0908,0 +NC_000962.3 3771628 . A C 2100.46 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3772616 . G A 2126.66 . AB=0;AO=80;DP=81;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:2400:-215.969,-24.0824,0 +NC_000962.3 3774077 . T A 2478.1 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3774506 . G A 1740.91 . AB=0;AO=66;DP=69;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3779671 . C CGGCAACGGT 559.342 . AB=0;AO=22;DP=32;QA=660;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:22:660:-59.3842,-6.62266,0 +NC_000962.3 3779892 . G C 570.251 . AB=0;AO=22;DP=22;QA=660;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:22:0:0:22:660:-59.6914,-6.62266,0 +NC_000962.3 3782104 . G A 1287.14 . AB=0;AO=53;DP=58;QA=1590;QR=150;RO=5;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:5:150:53:1590:-129.581,-3.66173,0 +NC_000962.3 3785946 . A G 2740.34 . AB=0;AO=103;DP=105;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 3786033 . A G 2802.93 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 3788365 . T G 2400.37 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3789276 . C A 2288.16 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3793428 . G T 3123.07 . AB=0;AO=117;DP=117;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:0:0:117:3510:-316.154,-35.2205,0 +NC_000962.3 3793634 . A G 2661.29 . AB=0;AO=100;DP=101;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:100:3000:-269.961,-30.103,0 +NC_000962.3 3794867 . C CCA 1707.35 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3798095 . A C 2737.11 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 3808103 . T C 2785.1 . AB=0;AO=105;DP=107;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 3809892 . G A 2041.53 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3811007 . C A 937.997 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 3811629 . G A 2476.8 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 3813364 . C T 1894.46 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3815268 . G A 2207.8 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 3815477 . G T 1995.6 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 3817117 . C A 2630.92 . AB=0;AO=99;DP=100;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 3820545 . A G 406.465 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 3821320 . T G 2450.65 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 3823159 . A T 2227.93 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 3826684 . C T 2640.73 . AB=0;AO=99;DP=99;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:2970:-267.561,-29.802,0 +NC_000962.3 3829770 . T C 2529.29 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3830566 . G A 2257.2 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 3830695 . A G 2284.36 . AB=0;AO=86;DP=88;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3838871 . A G 1961.46 . AB=0;AO=74;DP=75;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 3842620 . A G 343.466 . AB=0;AO=15;DP=16;QA=450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:15:450:-40.4941,-4.51545,0 +NC_000962.3 3842625 . A G 369.635 . AB=0;AO=16;DP=18;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 3843407 . CG C 2466.2 . AB=0;AO=93;DP=98;QA=2790;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 3844756 . GC G 1588.96 . AB=0;AO=60;DP=63;QA=1800;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:60:1800:-161.977,-18.0618,0 +NC_000962.3 3844992 . T A 1774.93 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 3845328 . T C 2400.38 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3845695 . C T 1875.05 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3847351 . A T 4997.03 . AB=0;AO=188;DP=189;QA=5640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:189:0:0:188:5640:-507.527,-56.5936,0 +NC_000962.3 3847562 . GA AC 1896.36 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 3847578 . TCAG CGAC 1589.31 . AB=0;AO=61;DP=65;QA=1830;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 3851084 . A G 2173.89 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3851887 . AT CC 1125.62 . AB=0;AO=43;DP=43;QA=1290;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:43:1290:-116.083,-12.9443,0 +NC_000962.3 3854899 . T C 2695.48 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 3859893 . C T 1538 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3861914 . C T 1990.3 . AB=0;AO=75;DP=78;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 3862472 . GA G 1372.75 . AB=0;AO=52;DP=53;QA=1560;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:52:1560:-140.38,-15.6536,0 +NC_000962.3 3864041 . G A 1643.19 . AB=0;AO=62;DP=64;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 3864995 . T C 1991.48 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 3868738 . C A 1956.99 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 3871246 . T C 1532.07 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3874722 . AT A 2531.2 . AB=0;AO=95;DP=97;QA=2850;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 3876953 . G A 1532.97 . AB=0;AO=58;DP=58;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:1740:-156.877,-17.4597,0 +NC_000962.3 3877421 . A G 3066.87 . AB=0;AO=115;DP=116;QA=3450;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:115:3450:-310.455,-34.6185,0 +NC_000962.3 3878630 . CG C 635.264 . AB=0;AO=26;DP=30;QA=780;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:26:780:-70.1768,-7.82678,0 +NC_000962.3 3883444 . T G 2242.28 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 3883467 . A G 2128.37 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 3883605 . T C 1180.48 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 3883626 . A G 1048.82 . AB=0;AO=42;DP=42;QA=1260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1260:-113.684,-12.6433,0 +NC_000962.3 3883664 . T C 738.194 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 3883682 . TGGGTCACG CCCAGCACA 415.521 . AB=0;AO=17;DP=17;QA=510;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:17:510:-46.1933,-5.11751,0 +NC_000962.3 3883707 . TGACG CGACA 365.514 . AB=0;AO=16;DP=17;QA=480;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:17:0:0:16:480:-43.1938,-4.81648,0 +NC_000962.3 3884787 . ACAAC GCAAA 753.647 . AB=0;AO=30;DP=30;QA=900;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:30:0:0:30:900:-81.2882,-9.0309,0 +NC_000962.3 3884906 . A G 1541.66 . AB=0;AO=59;DP=60;QA=1770;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:1:30:59:1770:-156.577,-15.0622,0 +NC_000962.3 3885886 . T C 2560.12 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 3888485 . C T 1401.9 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 3892671 . A G 2591.2 . AB=0;AO=98;DP=100;QA=2940;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:1:30:98:2940:-261.862,-27.1024,0 +NC_000962.3 3893480 . G A 2403.98 . AB=0;AO=91;DP=92;QA=2730;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:1:30:91:2730:-242.965,-24.6952,0 +NC_000962.3 3895247 . T CGCC 1531.45 . AB=0;AO=58;DP=62;QA=1740;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 3895257 . G C 1623.01 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 3895269 . G C 1645.64 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3895281 . TG CA 1670.4 . AB=0;AO=63;DP=64;QA=1890;QR=0;RO=0;TYPE=mnp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:63:1890:-170.075,-18.9649,0 +NC_000962.3 3895304 . CCAGCTGGGTTCG C 1454.32 . AB=0;AO=55;DP=57;QA=1650;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:55:1650:-148.479,-16.5567,0 +NC_000962.3 3895727 . C A 2258.35 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 3896221 . G A 1510.53 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 3896340 . T G 1638.96 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 3898408 . A G 2203.33 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.368,-24.9855,0 +NC_000962.3 3898869 . C A 1288.89 . AB=0;AO=49;DP=49;QA=1470;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:0:0:49:1470:-132.581,-14.7505,0 +NC_000962.3 3899654 . C A 2046.22 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 3902763 . G A 2206.16 . AB=0;AO=84;DP=85;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:84:2520:-224.068,-22.588,0 +NC_000962.3 3907069 . CA C 2003.56 . AB=0;AO=76;DP=80;QA=2280;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:76:2280:-205.142,-22.8783,0 +NC_000962.3 3909235 . G C 1932.39 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 3913737 . G A 2882.39 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 3920109 . G T 1933.72 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 3921094 . C T 2794.18 . AB=0;AO=105;DP=105;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:105:3150:-283.759,-31.6082,0 +NC_000962.3 3922836 . T C 2529.84 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 3929949 . AGGCAACGGC A 461.881 . AB=0;AO=18;DP=18;QA=540;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:18:0:0:18:540:-48.8929,-5.41854,0 +NC_000962.3 3929996 . G T 416.085 . AB=0;AO=17;DP=18;QA=510;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:18:1:30:17:510:-43.1938,-2.41897,0 +NC_000962.3 3932146 . C T 290.381 . AB=0;AO=12;DP=14;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:12:360:-32.3953,-3.61236,0 +NC_000962.3 3934542 . T G 352.887 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 3934699 . G A 206.039 . AB=0;AO=9;DP=11;QA=270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 3936696 . A G 1334.91 . AB=0;AO=51;DP=52;QA=1530;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:51:1530:-137.68,-15.3525,0 +NC_000962.3 3938875 . T C 2209.42 . AB=0;AO=84;DP=87;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 3940802 . A G 304.841 . AB=0;AO=12;DP=12;QA=360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:12:360:-32.6953,-3.61236,0 +NC_000962.3 3942239 . C A 1114.41 . AB=0;AO=43;DP=46;QA=1290;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:1:30:43:1290:-113.384,-10.5457,0 +NC_000962.3 3942377 . C T 1051.11 . AB=0;AO=40;DP=40;QA=1200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:40:1200:-108.284,-12.0412,0 +NC_000962.3 3942481 . C G 974.673 . AB=0;AO=37;DP=37;QA=1110;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:37:0:0:37:1110:-100.186,-11.1381,0 +NC_000962.3 3942640 . T C 1207.73 . AB=0;AO=46;DP=46;QA=1380;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1380:-124.482,-13.8474,0 +NC_000962.3 3942917 . C T 864.273 . AB=0;AO=33;DP=33;QA=990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:33:0:0:33:990:-89.3871,-9.93399,0 +NC_000962.3 3943019 . C G 443.65 . AB=0;AO=19;DP=19;QA=570;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:19:0:0:19:570:-51.5925,-5.71957,0 +NC_000962.3 3943680 . G A 764.453 . AB=0;AO=30;DP=34;QA=900;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:30:900:-80.9883,-9.0309,0 +NC_000962.3 3944807 . T C 824.507 . AB=0;AO=32;DP=32;QA=960;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:960:-86.6875,-9.63296,0 +NC_000962.3 3951036 . G C 307.325 . AB=0;AO=13;DP=13;QA=390;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:13:0:0:13:390:-35.3949,-3.91339,0 +NC_000962.3 3952518 . A C 2505.24 . AB=0;AO=95;DP=96;QA=2850;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:30:95:2850:-253.763,-25.8993,0 +NC_000962.3 3952800 . G A 2367.08 . AB=0;AO=89;DP=92;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 3958007 . C T 2178.99 . AB=0;AO=83;DP=87;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 3958403 . A G 2099.58 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 3959418 . C T 1748.99 . AB=0;AO=66;DP=69;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 3961373 . T G 2324.57 . AB=0;AO=88;DP=89;QA=2640;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:1:30:88:2640:-234.866,-23.7921,0 +NC_000962.3 3961802 . A G 2287.97 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 3967223 . G A 2901.85 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 3969907 . A G 2288.37 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 3970069 . G C 1908.34 . AB=0;AO=72;DP=74;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 3970112 . C T 1874.06 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 3974142 . G A 1257.69 . AB=0;AO=48;DP=48;QA=1440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1440:-129.881,-14.4494,0 +NC_000962.3 3979151 . T A 2500.99 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 3980806 . C A 2266 . AB=0;AO=86;DP=87;QA=2580;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:30:86:2580:-229.467,-23.19,0 +NC_000962.3 3984321 . G A 2693.43 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 3984926 . G A 1514.08 . AB=0;AO=58;DP=59;QA=1740;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:1:30:58:1740:-153.878,-14.7612,0 +NC_000962.3 3989107 . C T 2179.37 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 3989914 . G T 1929.25 . AB=0;AO=74;DP=76;QA=2220;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:60:74:2220:-194.372,-17.1791,0 +NC_000962.3 3994898 . A G 1719.5 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 3998895 . G A 569.48 . AB=0;AO=23;DP=23;QA=690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:23:0:0:23:690:-62.391,-6.92369,0 +NC_000962.3 4003645 . C T 2827.83 . AB=0;AO=106;DP=108;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 4005114 . G C 1804.97 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4005607 . T C 2400.26 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 4008747 . A G 1590.81 . AB=0;AO=60;DP=60;QA=1800;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:1800:-162.277,-18.0618,0 +NC_000962.3 4012219 . T C 3390.95 . AB=0;AO=127;DP=127;QA=3810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:0:0:127:3810:-343.15,-38.2308,0 +NC_000962.3 4013076 . G A 1760.04 . AB=0;AO=67;DP=68;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:67:2010:-180.874,-20.169,0 +NC_000962.3 4014431 . C T 1696.6 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.775,-19.2659,0 +NC_000962.3 4019103 . G T 2825.13 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 4020786 . G A 2069.81 . AB=0;AO=78;DP=80;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:78:2340:-210.57,-23.4803,0 +NC_000962.3 4022652 . G A 1965.18 . AB=0;AO=74;DP=77;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:74:2220:-199.771,-22.2762,0 +NC_000962.3 4024079 . T C 2045.64 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4024273 . T C 2257.96 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4024967 . C G 2001.94 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4026800 . G C 1837.54 . AB=0;AO=70;DP=71;QA=2100;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:30:70:2100:-186.273,-18.3736,0 +NC_000962.3 4026899 . G A 2046.1 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4028752 . A G 2718 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 4034827 . C T 2743.52 . AB=0;AO=103;DP=105;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:103:3090:-278.06,-31.0061,0 +NC_000962.3 4037187 . G GCCGCCGGGCGCGCCGGGGCCACCGTTT 266.852 . AB=0;AO=11;DP=12;QA=330;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:12:0:0:11:330:-29.6957,-3.31133,0 +NC_000962.3 4037283 . T G 508.095 . AB=0;AO=20;DP=21;QA=600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:21:0:0:20:600:-53.9922,-6.0206,0 +NC_000962.3 4040517 . A G 2900.4 . AB=0;AO=109;DP=109;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:109:0:0:109:3270:-294.557,-32.8123,0 +NC_000962.3 4054364 . C T 2693.09 . AB=0;AO=101;DP=101;QA=3030;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3030:-272.961,-30.404,0 +NC_000962.3 4054637 . A G 2906.14 . AB=0;AO=109;DP=111;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 4055161 . G A 2748.03 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 4055801 . GTG ATA 2233.5 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4056416 . C A 3068.19 . AB=0;AO=118;DP=121;QA=3540;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:121:3:90:118:3540:-310.455,-28.0258,0 +NC_000962.3 4058711 . T C 1901.59 . AB=0;AO=72;DP=75;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4059715 . G A 2617.15 . AB=0;AO=99;DP=104;QA=2970;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:1:30:99:2970:-264.562,-27.4034,0 +NC_000962.3 4059904 . A G 3098.08 . AB=0;AO=116;DP=116;QA=3480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:116:0:0:116:3480:-313.455,-34.9195,0 +NC_000962.3 4060100 . G A 1294.58 . AB=0;AO=52;DP=52;QA=1560;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1560:-140.68,-15.6536,0 +NC_000962.3 4060201 . G A 355.644 . AB=0;AO=16;DP=16;QA=480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:16:0:0:16:480:-43.4937,-4.81648,0 +NC_000962.3 4060210 . T A 305.734 . AB=0;AO=14;DP=14;QA=420;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:14:0:0:14:420:-38.0945,-4.21442,0 +NC_000962.3 4060230 . G A 180.776 . AB=0;AO=9;DP=11;QA=270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:9:270:-24.2965,-2.70927,0 +NC_000962.3 4061113 . G T 2340.19 . AB=0;AO=88;DP=89;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 4067152 . G A 1976.74 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4069292 . G A 2315.72 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 4069797 . C T 2092.65 . AB=0;AO=79;DP=80;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4071619 . G A 2190.66 . AB=0;AO=83;DP=86;QA=2490;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:83:2490:-221.368,-22.5869,0 +NC_000962.3 4072697 . G A 2127.5 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4077177 . G A 2236.78 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 4078863 . C T 2905.66 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 4081987 . G C 2283.75 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4081996 . G C 2164.4 . AB=0;AO=83;DP=85;QA=2490;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:2:60:83:2490:-218.668,-19.8884,0 +NC_000962.3 4083360 . T G 1704.65 . AB=0;AO=65;DP=66;QA=1950;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:1:30:65:1950:-172.775,-16.8684,0 +NC_000962.3 4085200 . G C 1884.28 . AB=0;AO=71;DP=71;QA=2130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2130:-191.972,-21.3731,0 +NC_000962.3 4089058 . T C 2577.38 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 4091160 . T C 2345.14 . AB=0;AO=88;DP=88;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:2640:-237.866,-26.4906,0 +NC_000962.3 4093719 . G A 1803.96 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4094866 . C T 1207.65 . AB=0;AO=47;DP=49;QA=1410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:49:1:30:47:1410:-124.182,-11.7498,0 +NC_000962.3 4095001 . CG C 1070.29 . AB=0;AO=41;DP=43;QA=1230;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:41:1230:-110.684,-12.3422,0 +NC_000962.3 4095295 . T C 2102.86 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4096190 . G A 1498.47 . AB=0;AO=57;DP=58;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:57:1710:-153.878,-17.1587,0 +NC_000962.3 4100975 . T C 1991.91 . AB=0;AO=75;DP=77;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 4101018 . C T 1858.45 . AB=0;AO=71;DP=72;QA=2130;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:1:30:71:2130:-188.973,-18.6746,0 +NC_000962.3 4102929 . G A 2157.84 . AB=0;AO=82;DP=86;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 4105537 . G A 2610.06 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 4105757 . C T 2610.4 . AB=0;AO=98;DP=100;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:98:2940:-264.562,-29.5009,0 +NC_000962.3 4106154 . C T 1937.75 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 4106239 . G A 1530.68 . AB=0;AO=60;DP=62;QA=1800;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:2:60:60:1800:-156.577,-12.9647,0 +NC_000962.3 4107074 . T C 2796.64 . AB=0;AO=105;DP=106;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:105:3150:-283.459,-31.6082,0 +NC_000962.3 4111303 . G C 1778.7 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4112429 . T C 1994.45 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4115029 . G A 1749.12 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4116682 . T C 2917.08 . AB=0;AO=110;DP=110;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:110:3300:-297.257,-33.1133,0 +NC_000962.3 4117161 . C A 2646.44 . AB=0;AO=101;DP=104;QA=3030;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:2:60:101:3030:-267.261,-25.6069,0 +NC_000962.3 4119246 . T C 1507.22 . AB=0;AO=57;DP=57;QA=1710;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:1710:-154.178,-17.1587,0 +NC_000962.3 4120983 . A G 937.522 . AB=0;AO=36;DP=36;QA=1080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:36:0:0:36:1080:-97.4859,-10.8371,0 +NC_000962.3 4126087 . T G 2179.43 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4130711 . G C 1697.99 . AB=0;AO=64;DP=64;QA=1920;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:1920:-173.075,-19.2659,0 +NC_000962.3 4133907 . G A 1794.28 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4135267 . C A 1403.84 . AB=0;AO=53;DP=53;QA=1590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1590:-143.379,-15.9546,0 +NC_000962.3 4137190 . T C 1943.97 . AB=0;AO=74;DP=75;QA=2220;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:30:74:2220:-197.072,-19.5777,0 +NC_000962.3 4138377 . A G 1456.39 . AB=0;AO=55;DP=55;QA=1650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:1650:-148.778,-16.5567,0 +NC_000962.3 4139074 . G C 1941.04 . AB=0;AO=73;DP=73;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2190:-197.371,-21.9752,0 +NC_000962.3 4142689 . G A 1639.87 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 4145737 . A G 1669.31 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4151855 . A G 2098.94 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4155266 . C G 1668.77 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4156099 . C A 2575 . AB=0;AO=98;DP=101;QA=2940;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:2:60:98:2940:-259.163,-24.7038,0 +NC_000962.3 4156239 . A G 2533.83 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 4156503 . C T 1779.44 . AB=0;AO=68;DP=70;QA=2040;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:30:68:2040:-180.874,-18.0715,0 +NC_000962.3 4158361 . A G 1907.86 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4159195 . T C 2443.13 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 4160533 . TGCGCCCGGC T 2227.13 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4162339 . A G 2933.24 . AB=0;AO=110;DP=111;QA=3300;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:110:3300:-296.957,-33.1133,0 +NC_000962.3 4163558 . G C 2105.25 . AB=0;AO=80;DP=82;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:30:80:2400:-213.269,-21.6838,0 +NC_000962.3 4169666 . GT G 2235.42 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4169719 . C T 2044.53 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4170964 . G GA 2831.82 . AB=0;AO=108;DP=114;QA=3240;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:114:2:60:108:3240:-286.159,-27.7141,0 +NC_000962.3 4177882 . C A 2414.34 . AB=0;AO=92;DP=94;QA=2760;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:2:60:92:2760:-242.965,-22.5976,0 +NC_000962.3 4179089 . C T 2987.15 . AB=0;AO=112;DP=112;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:112:3360:-302.656,-33.7154,0 +NC_000962.3 4182492 . G A 2152.02 . AB=0;AO=81;DP=83;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:81:2430:-218.668,-24.3834,0 +NC_000962.3 4182695 . G A 2234.56 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 4183957 . G A 2098.55 . AB=0;AO=79;DP=81;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:79:2370:-213.269,-23.7814,0 +NC_000962.3 4184811 . C T 3913.06 . AB=0;AO=147;DP=149;QA=4410;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:149:1:30:147:4410:-394.143,-41.8528,0 +NC_000962.3 4187063 . G A 2286.56 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4187485 . T C 2859.51 . AB=0;AO=108;DP=111;QA=3240;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:1:30:108:3240:-288.858,-30.1127,0 +NC_000962.3 4187817 . A G 2176.64 . AB=0;AO=82;DP=83;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 4189721 . G T 1931.66 . AB=0;AO=73;DP=74;QA=2190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:73:2190:-197.072,-21.9752,0 +NC_000962.3 4190285 . T C 2716.48 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 4190532 . A C 2358.88 . AB=0;AO=91;DP=94;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:91:2730:-237.566,-19.898,0 +NC_000962.3 4190596 . A C 2884.15 . AB=0;AO=108;DP=108;QA=3240;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:108:0:0:108:3240:-291.858,-32.5112,0 +NC_000962.3 4193467 . A G 2530.83 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 4193625 . G A 2448.78 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 4195004 . C A 2242.89 . AB=0;AO=85;DP=86;QA=2550;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:85:2550:-226.767,-22.889,0 +NC_000962.3 4197138 . C CT 1906.41 . AB=0;AO=72;DP=73;QA=2160;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:72:2160:-194.372,-21.6742,0 +NC_000962.3 4197189 . A G 1992.62 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4198611 . CG C 2283.56 . AB=0;AO=86;DP=89;QA=2580;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4200220 . A G 2126 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4201105 . G A 2259.03 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 4202383 . A C 2153.42 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 4203135 . G A 2260.24 . AB=0;AO=85;DP=86;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:85:2550:-229.467,-25.5876,0 +NC_000962.3 4204441 . A G 2960.37 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 4205120 . A G 2183.84 . AB=0;AO=82;DP=82;QA=2460;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:2460:-221.668,-24.6845,0 +NC_000962.3 4210274 . A G 1644.25 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4210876 . T C 2477.88 . AB=0;AO=93;DP=94;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 4215484 . G C 2426.45 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 4216255 . C G 1977.66 . AB=0;AO=76;DP=77;QA=2280;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:30:76:2280:-202.471,-20.1797,0 +NC_000962.3 4216742 . G A 2124.48 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4217557 . A G 2531.38 . AB=0;AO=95;DP=98;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 4218940 . G T 1911.08 . AB=0;AO=73;DP=74;QA=2190;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:1:30:73:2190:-194.372,-19.2767,0 +NC_000962.3 4221490 . C G 2013.29 . AB=0;AO=76;DP=76;QA=2280;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2280:-205.47,-22.8783,0 +NC_000962.3 4222073 . A G 2036.59 . AB=0;AO=77;DP=77;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2310:-208.17,-23.1793,0 +NC_000962.3 4222852 . G C 2313.37 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 4222882 . A G 2368.04 . AB=0;AO=89;DP=91;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:89:2670:-240.265,-26.7917,0 +NC_000962.3 4223172 . T C 1503.77 . AB=0;AO=58;DP=61;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 4232327 . A G 2075.9 . AB=0;AO=78;DP=78;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2340:-210.87,-23.4803,0 +NC_000962.3 4234844 . T C 2129.66 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4235582 . G A 2532.38 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 4240671 . C T 2109.55 . AB=0;AO=80;DP=81;QA=2400;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:30:80:2400:-213.269,-21.3839,0 +NC_000962.3 4241042 . A G 2440.88 . AB=0;AO=92;DP=93;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:92:2760:-248.364,-27.6948,0 +NC_000962.3 4242643 . C T 2079.53 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4243848 . G A 1672.85 . AB=0;AO=63;DP=63;QA=1890;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:1890:-170.375,-18.9649,0 +NC_000962.3 4244096 . C T 2288.56 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4245969 . C T 2502.47 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4247646 . A C 2506.5 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4251297 . G C 1472.02 . AB=0;AO=57;DP=58;QA=1710;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:30:57:1710:-151.178,-14.4602,0 +NC_000962.3 4254109 . G A 253.91 . AB=0;AO=11;DP=11;QA=330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:11:0:0:11:330:-29.9957,-3.31133,0 +NC_000962.3 4254265 . A G 1111.8 . AB=0;AO=44;DP=45;QA=1320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:44:1320:-118.783,-13.2453,0 +NC_000962.3 4254330 . CCCAATTCGTA C 1421.13 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4254346 . TT A 1425.31 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4255922 . A G 2152.93 . AB=0;AO=82;DP=85;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:30:82:2460:-218.668,-22.2859,0 +NC_000962.3 4257220 . A G 1630.43 . AB=0;AO=62;DP=63;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 4261499 . G A 2718 . AB=0;AO=102;DP=102;QA=3060;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3060:-275.66,-30.7051,0 +NC_000962.3 4263279 . A G 1800.46 . AB=0;AO=68;DP=69;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:68:2040:-183.573,-20.47,0 +NC_000962.3 4269387 . T G 2537.09 . AB=0;AO=98;DP=102;QA=2940;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:3:90:98:2940:-256.463,-22.3052,0 +NC_000962.3 4269606 . A G 2825.22 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 4275218 . G A 1693.01 . AB=0;AO=67;DP=71;QA=2010;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:3:90:67:2010:-172.775,-12.9733,0 +NC_000962.3 4275935 . A G 2985.85 . AB=0;AO=112;DP=114;QA=3360;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:114:0:0:112:3360:-302.356,-33.7154,0 +NC_000962.3 4276306 . C T 2441.65 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4277032 . G C 2034.93 . AB=0;AO=77;DP=79;QA=2310;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:77:2310:-207.87,-23.1793,0 +NC_000962.3 4277541 . A G 3311.76 . AB=0;AO=124;DP=127;QA=3720;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:127:0:0:124:3720:-334.752,-37.3277,0 +NC_000962.3 4280441 . C A 2646.95 . AB=0;AO=100;DP=102;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:1:30:100:3000:-267.261,-27.7044,0 +NC_000962.3 4281143 . C G 2233.71 . AB=0;AO=84;DP=84;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:2520:-227.067,-25.2865,0 +NC_000962.3 4281272 . G A 2208.83 . AB=0;AO=83;DP=84;QA=2490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4286156 . T C 2141.38 . AB=0;AO=81;DP=81;QA=2430;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:2430:-218.968,-24.3834,0 +NC_000962.3 4287164 . A G 2315.53 . AB=0;AO=87;DP=88;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:87:2610:-234.866,-26.1896,0 +NC_000962.3 4287361 . C T 2586.29 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 4289953 . A G 2662.05 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 4290564 . G T 2742.64 . AB=0;AO=103;DP=103;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3090:-278.36,-31.0061,0 +NC_000962.3 4290827 . C G 2506.32 . AB=0;AO=94;DP=94;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:2820:-254.063,-28.2968,0 +NC_000962.3 4294034 . C T 2420.04 . AB=0;AO=91;DP=93;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 4296015 . G A 2373.56 . AB=0;AO=90;DP=91;QA=2700;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:1:30:90:2700:-240.265,-24.3942,0 +NC_000962.3 4296381 . G T 2635.81 . AB=0;AO=99;DP=101;QA=2970;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:99:2970:-267.261,-29.802,0 +NC_000962.3 4300694 . A G 3120.7 . AB=0;AO=117;DP=117;QA=3510;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:117:0:0:117:3510:-316.154,-35.2205,0 +NC_000962.3 4302036 . T C 1740.75 . AB=0;AO=66;DP=66;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:1980:-178.474,-19.868,0 +NC_000962.3 4303407 . A C 2301.9 . AB=0;AO=88;DP=90;QA=2640;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:2:60:88:2640:-232.166,-21.3935,0 +NC_000962.3 4306155 . C T 2337.05 . AB=0;AO=88;DP=90;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:88:2640:-237.566,-26.4906,0 +NC_000962.3 4306339 . G T 2216.02 . AB=0;AO=84;DP=86;QA=2520;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:30:84:2520:-224.068,-22.8879,0 +NC_000962.3 4307179 . G A 2254.3 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4307344 . C G 1748.73 . AB=0;AO=66;DP=69;QA=1980;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:66:1980:-178.174,-19.868,0 +NC_000962.3 4309005 . C T 1614.64 . AB=0;AO=62;DP=63;QA=1860;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:1:30:62:1860:-164.676,-15.9653,0 +NC_000962.3 4310580 . C T 2562.3 . AB=0;AO=97;DP=99;QA=2910;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:1:30:97:2910:-259.163,-26.8013,0 +NC_000962.3 4310743 . T TG 2180.21 . AB=0;AO=82;DP=86;QA=2460;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:82:2460:-221.368,-24.6845,0 +NC_000962.3 4313128 . C T 1905.06 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4314216 . G A 2948.22 . AB=0;AO=111;DP=112;QA=3330;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:112:0:0:111:3330:-299.657,-33.4143,0 +NC_000962.3 4314645 . A G 2702.11 . AB=0;AO=102;DP=105;QA=3060;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:1:30:102:3060:-272.661,-28.3065,0 +NC_000962.3 4314843 . G A 2221.66 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4316566 . C G 2643.33 . AB=0;AO=100;DP=101;QA=3000;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:1:30:100:3000:-267.261,-27.4045,0 +NC_000962.3 4318424 . TC G 1634.23 . AB=0;AO=64;DP=65;QA=1920;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:64:1920:-172.716,-19.2659,0 +NC_000962.3 4323006 . G A 2546.99 . AB=0;AO=96;DP=96;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:2880:-259.462,-28.8989,0 +NC_000962.3 4323302 . T C 2900.11 . AB=0;AO=109;DP=110;QA=3270;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:110:0:0:109:3270:-294.257,-32.8123,0 +NC_000962.3 4323354 . C CG 2451.26 . AB=0;AO=94;DP=100;QA=2820;QR=60;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:100:2:60:94:2820:-248.364,-23.4997,0 +NC_000962.3 4329782 . G A 2827.25 . AB=0;AO=106;DP=106;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3180:-286.459,-31.9092,0 +NC_000962.3 4334425 . G C 2100.46 . AB=0;AO=79;DP=79;QA=2370;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2370:-213.569,-23.7814,0 +NC_000962.3 4336597 . C A 1953.38 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 4337574 . A G 1968.55 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4338242 . G C 1973.15 . AB=0;AO=75;DP=75;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2250:-202.771,-22.5773,0 +NC_000962.3 4338595 . GC G 2502.4 . AB=0;AO=94;DP=95;QA=2820;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:2820:-253.763,-28.2968,0 +NC_000962.3 4338603 . G A 2531.47 . AB=0;AO=95;DP=95;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:2850:-256.763,-28.5979,0 +NC_000962.3 4338732 . G A 2371.04 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 4340984 . T TTCCCCGGGTTCCCCTCCCTACCCGGTTTCCCCGGGC 1049.82 . AB=0;AO=40;DP=45;QA=1200;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:40:1200:-107.984,-12.0412,0 +NC_000962.3 4341396 . A AAGGCGCGGCCGC 1382.55 . AB=0;AO=53;DP=56;QA=1590;QR=30;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:56:1:30:53:1590:-140.38,-13.556,0 +NC_000962.3 4344058 . T C 1830.82 . AB=0;AO=69;DP=70;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 4351039 . G T 2416.24 . AB=0;AO=91;DP=92;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:91:2730:-245.664,-27.3937,0 +NC_000962.3 4351759 . G C 2233.16 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4356110 . G C 2580.95 . AB=0;AO=97;DP=97;QA=2910;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:2910:-262.162,-29.1999,0 +NC_000962.3 4356864 . C CTG 2476.21 . AB=0;AO=93;DP=101;QA=2790;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:93:2790:-251.064,-27.9958,0 +NC_000962.3 4357597 . C G 1420.81 . AB=0;AO=54;DP=54;QA=1620;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:1620:-146.079,-16.2556,0 +NC_000962.3 4357773 . G A 2215.79 . AB=0;AO=84;DP=85;QA=2520;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:84:2520:-226.767,-25.2865,0 +NC_000962.3 4357946 . C T 2355.86 . AB=0;AO=91;DP=94;QA=2730;QR=90;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:3:90:91:2730:-237.566,-19.898,0 +NC_000962.3 4366195 . T C 2366.37 . AB=0;AO=89;DP=89;QA=2670;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:2670:-240.565,-26.7917,0 +NC_000962.3 4366272 . G C 2393.06 . AB=0;AO=90;DP=91;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:90:2700:-242.965,-27.0927,0 +NC_000962.3 4367649 . A G 2815.77 . AB=0;AO=106;DP=107;QA=3180;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:107:0:0:106:3180:-286.159,-31.9092,0 +NC_000962.3 4369499 . G A 1518.54 . AB=0;AO=59;DP=63;QA=1770;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:2:60:59:1770:-153.878,-12.9636,0 +NC_000962.3 4369848 . G A 2533.85 . AB=0;AO=97;DP=99;QA=2910;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:2:60:97:2910:-256.463,-24.1028,0 +NC_000962.3 4372353 . G C 2529.93 . AB=0;AO=95;DP=96;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 4372653 . G A 3423.52 . AB=0;AO=128;DP=128;QA=3840;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:128:0:0:128:3840:-345.85,-38.5318,0 +NC_000962.3 4373519 . C T 1957.91 . AB=0;AO=74;DP=74;QA=2220;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2220:-200.071,-22.2762,0 +NC_000962.3 4374228 . T C 2285.56 . AB=0;AO=86;DP=87;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:86:2580:-232.166,-25.8886,0 +NC_000962.3 4374244 . G C 2446.13 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4375318 . G A 2422.1 . AB=0;AO=91;DP=91;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:2730:-245.964,-27.3937,0 +NC_000962.3 4375628 . G T 2611.28 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 4377033 . G C 1700.19 . AB=0;AO=65;DP=65;QA=1950;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:1950:-175.775,-19.567,0 +NC_000962.3 4379680 . C G 2263.04 . AB=0;AO=85;DP=85;QA=2550;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:2550:-229.767,-25.5876,0 +NC_000962.3 4382054 . T C 2123.39 . AB=0;AO=80;DP=80;QA=2400;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2400:-216.269,-24.0824,0 +NC_000962.3 4382275 . G T 2613.93 . AB=0;AO=98;DP=98;QA=2940;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:2940:-264.862,-29.5009,0 +NC_000962.3 4383144 . C CCGGGG 1607.58 . AB=0;AO=61;DP=65;QA=1830;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:61:1830:-164.676,-18.3628,0 +NC_000962.3 4383442 . T C 1617.07 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4383655 . A G 1530.25 . AB=0;AO=58;DP=59;QA=1740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:1740:-156.577,-17.4597,0 +NC_000962.3 4384007 . C G 2313.97 . AB=0;AO=87;DP=87;QA=2610;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:2610:-235.166,-26.1896,0 +NC_000962.3 4385031 . CG C 673.29 . AB=0;AO=27;DP=34;QA=810;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:27:810:-72.8895,-8.12781,0 +NC_000962.3 4385187 . A G 1618.2 . AB=0;AO=61;DP=61;QA=1830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:1830:-164.976,-18.3628,0 +NC_000962.3 4385937 . C T 2530.29 . AB=0;AO=95;DP=111;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:111:0:0:95:2850:-256.463,-28.5979,0 +NC_000962.3 4386228 . T C 3555.23 . AB=0;AO=133;DP=133;QA=3990;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:133:0:0:133:3990:-359.348,-40.037,0 +NC_000962.3 4390380 . A G 1784.81 . AB=0;AO=68;DP=68;QA=2040;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2040:-183.873,-20.47,0 +NC_000962.3 4393178 . A G 2388.5 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 4394210 . G C 1831.07 . AB=0;AO=69;DP=71;QA=2070;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:69:2070:-186.273,-20.7711,0 +NC_000962.3 4395387 . A G 1831.29 . AB=0;AO=71;DP=74;QA=2130;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:2:60:71:2130:-186.273,-16.576,0 +NC_000962.3 4395468 . C T 1978.1 . AB=0;AO=75;DP=76;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2250:-202.471,-22.5773,0 +NC_000962.3 4398732 . G A 1910.86 . AB=0;AO=72;DP=72;QA=2160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2160:-194.672,-21.6742,0 +NC_000962.3 4400625 . T C 1775.62 . AB=0;AO=67;DP=67;QA=2010;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2010:-181.174,-20.169,0 +NC_000962.3 4400660 . AC A 1640.98 . AB=0;AO=62;DP=65;QA=1860;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:62:1860:-167.376,-18.6639,0 +NC_000962.3 4401400 . A G 1645.08 . AB=0;AO=62;DP=62;QA=1860;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:1860:-167.676,-18.6639,0 +NC_000962.3 4404247 . G A 2394.52 . AB=0;AO=90;DP=90;QA=2700;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:2700:-243.265,-27.0927,0 +NC_000962.3 4407588 . T C 2448.97 . AB=0;AO=92;DP=92;QA=2760;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:2760:-248.664,-27.6948,0 +NC_000962.3 4407873 . C A 2163.92 . AB=0;AO=82;DP=83;QA=2460;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:30:82:2460:-218.668,-21.9859,0 +NC_000962.3 4408920 . AGGC GGGT 2201.36 . AB=0;AO=83;DP=83;QA=2490;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:2490:-224.068,-24.9855,0 +NC_000962.3 4409660 . C A 2653.89 . AB=0;AO=100;DP=100;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3000:-270.261,-30.103,0 +NC_000962.3 4410386 . G T 2459.73 . AB=0;AO=93;DP=94;QA=2790;QR=30;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:30:93:2790:-248.364,-25.2973,0 +NC_000962.3 4410487 . G A 2292.57 . AB=0;AO=86;DP=86;QA=2580;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:2580:-232.466,-25.8886,0 +NC_000962.3 4411016 . G A 2478.1 . AB=0;AO=93;DP=93;QA=2790;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:2790:-251.364,-27.9958,0 +NC_000962.3 4411501 . C T 1168.18 . AB=0;AO=51;DP=53;QA=1530;QR=60;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:2:60:51:1530:-132.281,-10.2554,0 diff --git a/.github/environments/art.yml b/.github/environments/art.yml new file mode 100644 index 0000000..bb6458a --- /dev/null +++ b/.github/environments/art.yml @@ -0,0 +1,7 @@ +name: art +channels: + - conda-forge + - bioconda + - defaults +dependencies: + - art=2016.06.05 diff --git a/.github/environments/check-outputs.yml b/.github/environments/check-outputs.yml new file mode 100644 index 0000000..414072e --- /dev/null +++ b/.github/environments/check-outputs.yml @@ -0,0 +1,9 @@ +name: check-outputs +channels: + - conda-forge + - bioconda + - defaults +dependencies: + - python=3 + - jsonschema=4.20.0 + - pyyaml=6.0.1 diff --git a/.github/scripts/apply_variants.py b/.github/scripts/apply_variants.py new file mode 100755 index 0000000..cdbc496 --- /dev/null +++ b/.github/scripts/apply_variants.py @@ -0,0 +1,73 @@ +#!/usr/bin/env python3 + + +import argparse +import json + +def parse_fasta(fasta): + """ + Parse a fasta file into a header and a sequence. + """ + with open(fasta, 'r') as f: + lines = f.readlines() + header = lines[0].strip() + sequence = ''.join(lines[1:]) + sequence = sequence.replace('\n', '') + parsed_fasta = { + 'header': header, + 'sequence': sequence + } + + return parsed_fasta + +def parse_vcf(vcf): + """ + """ + parsed_vcf = [] + header = [] + with open(vcf, 'r') as f: + for line in f: + if line.startswith('##'): + continue + elif line.startswith('#'): + header = line.strip().lstrip('#').split('\t') + else: + vcf_line_split = line.strip().split('\t') + vcf_dict = dict(zip(header, vcf_line_split)) + vcf_dict['POS'] = int(vcf_dict['POS']) + vcf_dict['INFO'] = dict([x.split('=') for x in vcf_dict['INFO'].split(';')]) + if 'ANN' in vcf_dict['INFO']: + vcf_dict['INFO']['ANN'] = vcf_dict['INFO']['ANN'].split(',') + parsed_vcf.append(vcf_dict) + + return parsed_vcf + + +def apply_variants(genome, variants): + """ + Apply variants to a reference genome. + """ + for variant in variants: + if variant['ALT'] == '.': + continue + genome['sequence'] = genome['sequence'][:variant['POS']-1] + variant['ALT'] + genome['sequence'][variant['POS']:] + + return genome + + + +def main(args): + genome = parse_fasta(args.genome) + variants = parse_vcf(args.variants) + genome = apply_variants(genome, variants) + with open(args.output, 'w') as f: + f.write(genome['header'] + '\n') + f.write(genome['sequence'] + '\n') + +if __name__ == '__main__': + parser = argparse.ArgumentParser(description='') + parser.add_argument('-g', '--genome', type=str, help='Input reference genome') + parser.add_argument('-v', '--variants', type=str, help='Variants to apply to the reference genome (vcf format)') + parser.add_argument('-o', '--output', type=str, help='Output file path, (fasta format)') + args = parser.parse_args() + main(args) diff --git a/.github/scripts/apply_variants.sh b/.github/scripts/apply_variants.sh new file mode 100755 index 0000000..9e42c86 --- /dev/null +++ b/.github/scripts/apply_variants.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +.github/scripts/apply_variants.py --genome .github/data/assemblies/NC_000962.3.fa --variants .github/data/variants/DRR261178.vcf -o .github/data/assemblies/DRR261178.fa +.github/scripts/apply_variants.py --genome .github/data/assemblies/NC_000962.3.fa --variants .github/data/variants/DRR261179.vcf -o .github/data/assemblies/DRR261179.fa +.github/scripts/apply_variants.py --genome .github/data/assemblies/NC_000962.3.fa --variants .github/data/variants/DRR261180.vcf -o .github/data/assemblies/DRR261180.fa +.github/scripts/apply_variants.py --genome .github/data/assemblies/NC_000962.3.fa --variants .github/data/variants/DRR261181.vcf -o .github/data/assemblies/DRR261181.fa diff --git a/.github/scripts/check_outputs.py b/.github/scripts/check_outputs.py new file mode 100755 index 0000000..d966ca6 --- /dev/null +++ b/.github/scripts/check_outputs.py @@ -0,0 +1,118 @@ +#!/usr/bin/env python3 + +import argparse +import csv +import glob +import json +import urllib.request + +from jsonschema import validate +import yaml + + +def check_provenance_format_valid(provenance_files, schema): + """ + Check that the provenance files are valid according to the schema. + """ + for provenance_file in provenance_files: + with open(provenance_file) as f: + try: + provenance = yaml.load(f, Loader=yaml.BaseLoader) + validate(provenance, schema) + except Exception as e: + return False + + return True + + +def check_expected_mutations(resistance_mutations_files, expected_mutations_by_sample_id): + """ + Check that the resistance mutations files contain the expected mutations. + """ + found_mutations_by_sample = {} + for resistance_mutations_file in resistance_mutations_files: + with open(resistance_mutations_file) as f: + reader = csv.DictReader(f) + for row in reader: + sample_id = row['sample_id'] + gene = row['gene'] + mutation = row['mutation'] + if sample_id not in found_mutations_by_sample: + found_mutations_by_sample[sample_id] = set([]) + if mutation != '': + found_mutations_by_sample[sample_id].add(':'.join([gene, mutation])) + + for sample_id, expected_mutations in expected_mutations_by_sample_id.items(): + if sample_id not in found_mutations_by_sample: + return False + if expected_mutations != found_mutations_by_sample[sample_id]: + return False + + return True + + +def main(args): + provenance_schema_url = "https://raw.githubusercontent.com/BCCDC-PHL/pipeline-provenance-schema/main/schema/pipeline-provenance.json" + provenance_schema_path = ".github/data/pipeline-provenance.json" + urllib.request.urlretrieve(provenance_schema_url, provenance_schema_path) + + provenance_schema = None + with open(provenance_schema_path) as f: + provenance_schema = json.load(f) + + provenace_files_glob = f"{args.pipeline_outdir}/**/*_provenance.yml" + provenance_files = glob.glob(provenace_files_glob, recursive=True) + + resistance_mutations_files_glob = f"{args.pipeline_outdir}/**/*tbprofiler_resistance_mutations.csv" + resistance_mutations_files = glob.glob(resistance_mutations_files_glob, recursive=True) + + expected_mutations_by_sample_id = { + 'NC000962.3': set([]), + 'ERR1664619': set([ + 'inhA:p.Ile194Thr', + 'embA:c.-16C>T', + 'embB:p.Met306Val', + 'embB:p.Met423Thr', + 'gyrA:p.Asp94Ala', + 'rrs:n.1401A>G', + ]), + } + + tests = [ + { + "test_name": "provenance_format_valid", + "test_passed": check_provenance_format_valid(provenance_files, provenance_schema), + }, + { + "test_name": "expected_mutations", + "test_passed": check_expected_mutations(resistance_mutations_files, expected_mutations_by_sample_id), + }, + ] + + output_fields = [ + "test_name", + "test_result" + ] + + output_path = args.output + with open(output_path, 'w') as f: + writer = csv.DictWriter(f, fieldnames=output_fields, extrasaction='ignore') + writer.writeheader() + for test in tests: + if test["test_passed"]: + test["test_result"] = "PASS" + else: + test["test_result"] = "FAIL" + writer.writerow(test) + + for test in tests: + if not test['test_passed']: + exit(1) + + +if __name__ == '__main__': + parser = argparse.ArgumentParser(description='Check outputs') + parser.add_argument('--pipeline-outdir', type=str, help='Path to the pipeline output directory') + parser.add_argument('-o', '--output', type=str, help='Path to the output file') + args = parser.parse_args() + main(args) diff --git a/.github/scripts/check_outputs.sh b/.github/scripts/check_outputs.sh new file mode 100755 index 0000000..c4e1986 --- /dev/null +++ b/.github/scripts/check_outputs.sh @@ -0,0 +1,10 @@ +#!/usr/bin/env bash + +source ${HOME}/.bashrc + +eval "$(conda shell.bash hook)" + +conda activate check-outputs + + +.github/scripts/check_outputs.py --pipeline-outdir .github/data/test_output -o artifacts/check_outputs_results.csv diff --git a/.github/scripts/create_art_environment.sh b/.github/scripts/create_art_environment.sh new file mode 100755 index 0000000..d393421 --- /dev/null +++ b/.github/scripts/create_art_environment.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +conda env create -f .github/environments/art.yml diff --git a/.github/scripts/create_output_checking_environment.sh b/.github/scripts/create_output_checking_environment.sh new file mode 100755 index 0000000..0f9a4a4 --- /dev/null +++ b/.github/scripts/create_output_checking_environment.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +conda env create -f .github/environments/check-outputs.yml diff --git a/.github/scripts/download_assemblies.sh b/.github/scripts/download_assemblies.sh new file mode 100755 index 0000000..bb936db --- /dev/null +++ b/.github/scripts/download_assemblies.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +mkdir -p .github/data/assemblies + +curl -o .github/data/assemblies/NC_000962.3.fa "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?retmode=text&id=NC_000962.3&db=nucleotide&rettype=fasta" diff --git a/.github/scripts/install_conda.sh b/.github/scripts/install_conda.sh new file mode 100755 index 0000000..fd82b1a --- /dev/null +++ b/.github/scripts/install_conda.sh @@ -0,0 +1,22 @@ +#!/bin/bash +set -eo pipefail + +artifacts_dir="artifacts" + +echo "Install Miniconda .." >> ${artifacts_dir}/test.log + +export PATH=/opt/miniconda3/bin:$PATH + +wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh + +/bin/bash ~/miniconda.sh -b -p /opt/miniconda3 + +rm ~/miniconda.sh + +echo ". /opt/minconda3/etc/profile.d/conda.sh" >> ~/.bashrc + +conda update -n base -c defaults conda + +conda install -y -c conda-forge mamba + +conda init bash diff --git a/.github/scripts/install_nextflow.sh b/.github/scripts/install_nextflow.sh new file mode 100755 index 0000000..ae5cde8 --- /dev/null +++ b/.github/scripts/install_nextflow.sh @@ -0,0 +1,11 @@ +#!/bin/bash + +set -eo pipefail + +artifacts_dir="artifacts" + +echo Install Nextflow .. >> ${artifacts_dir}/test.log + +wget -qO- https://get.nextflow.io | bash + +sudo mv nextflow /usr/local/bin/ diff --git a/.github/scripts/prepare_artifacts.sh b/.github/scripts/prepare_artifacts.sh new file mode 100755 index 0000000..2ac7069 --- /dev/null +++ b/.github/scripts/prepare_artifacts.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +artifacts_dir="artifacts" + +echo "Prepare artifacts .." >> ${artifacts_dir}/test.log + +mkdir -p ${artifacts_dir}/fastq + +mv .github/data/fastq/*.fastq.gz ${artifacts_dir}/fastq + +mkdir -p ${artifacts_dir}/pipeline_outputs + +mv .github/data/test_output/* ${artifacts_dir}/pipeline_outputs diff --git a/.github/scripts/run_pipeline.sh b/.github/scripts/run_pipeline.sh new file mode 100755 index 0000000..cde0db6 --- /dev/null +++ b/.github/scripts/run_pipeline.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +set -eo pipefail + +sed -i 's/cpus = 8/cpus = 4/g' nextflow.config + +nextflow run main.nf \ + -profile conda \ + --cache ${HOME}/.conda/envs \ + --fastq_input .github/data/fastq \ + --ref .github/data/assemblies/NC_000962.3.fa \ + --outdir .github/data/test_output \ + -with-report .github/data/test_output/nextflow_report.html \ + -with-trace .github/data/test_output/nextflow_trace.tsv diff --git a/.github/scripts/simulate_reads.sh b/.github/scripts/simulate_reads.sh new file mode 100755 index 0000000..7001cce --- /dev/null +++ b/.github/scripts/simulate_reads.sh @@ -0,0 +1,35 @@ +#!/bin/bash + + +source ${HOME}/.bashrc + +eval "$(conda shell.bash hook)" + +conda activate art + +mkdir -p .github/data/fastq + +while IFS=',' read -r sample_id assembly; do + art_illumina \ + --paired \ + --in ${assembly} \ + --fcov 12 \ + --len 150 \ + --mflen 400 \ + --sdev 100 \ + --rndSeed 42 \ + --qShift 0 \ + --qShift2 0 \ + --out .github/data/fastq/${sample_id}_R + + rm -f .github/data/fastq/${sample_id}_R1.aln + rm -f .github/data/fastq/${sample_id}_R2.aln + + mv .github/data/fastq/${sample_id}_R1.fq .github/data/fastq/${sample_id}_R1.fastq + mv .github/data/fastq/${sample_id}_R2.fq .github/data/fastq/${sample_id}_R2.fastq + + gzip -f .github/data/fastq/${sample_id}_R1.fastq + gzip -f .github/data/fastq/${sample_id}_R2.fastq + +done < .github/data/reads_to_simulate.csv + diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml new file mode 100644 index 0000000..4cd8e15 --- /dev/null +++ b/.github/workflows/tests.yml @@ -0,0 +1,50 @@ +on: + pull_request: + branches: + - main + push: + branches: + - main + workflow_dispatch: +name: Tests +jobs: + test: + strategy: + fail-fast: false + matrix: + nextflow_version: ["21.04.3", "23.10.1"] + name: Run tests + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@master + - name: Create Artifacts Directory + run: mkdir artifacts + - name: Install Miniconda + run: bash .github/scripts/install_conda.sh + - name: Install Nextflow + env: + NXF_VER: ${{ matrix.nextflow_version }} + run: bash .github/scripts/install_nextflow.sh + - name: Create ART Read-Simulation Environment + run: bash .github/scripts/create_art_environment.sh + - name: Download Assemblies + run: bash .github/scripts/download_assemblies.sh + - name: Apply Variants + run: bash .github/scripts/apply_variants.sh + - name: Simulate Reads + run: bash .github/scripts/simulate_reads.sh + - name: Run Pipeline + run: bash .github/scripts/run_pipeline.sh + - name: Create Output Checking Environment + run: bash .github/scripts/create_output_checking_environment.sh + - name: Check Outputs + run: bash .github/scripts/check_outputs.sh + - name: Prepare Artifacts + if: always() + run: bash .github/scripts/prepare_artifacts.sh + - name: Upload Artifacts + uses: actions/upload-artifact@v4 + if: always() + with: + name: artifacts-BCCDC-PHL-tbprofiler-nf-nextflow-v${{ matrix.nextflow_version }}-${{ github.run_id }}.${{ github.run_attempt }} + path: artifacts From 354d012218da418b25e9eafb10cb50d7bb3f8743 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Wed, 21 Feb 2024 16:41:26 -0800 Subject: [PATCH 2/7] Add conda.enabled --- nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nextflow.config b/nextflow.config index e5dd027..175acac 100644 --- a/nextflow.config +++ b/nextflow.config @@ -51,6 +51,7 @@ process { profiles { conda { + conda.enabled = true process.conda = "$baseDir/environments/environment.yml" if (params.cache){ conda.cacheDir = params.cache From 4b9a5de2267a001247b41588f5d83a1db2a44571 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Wed, 21 Feb 2024 16:45:09 -0800 Subject: [PATCH 3/7] lower mincov to 6 --- .github/scripts/run_pipeline.sh | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/scripts/run_pipeline.sh b/.github/scripts/run_pipeline.sh index cde0db6..260ce8e 100755 --- a/.github/scripts/run_pipeline.sh +++ b/.github/scripts/run_pipeline.sh @@ -9,6 +9,7 @@ nextflow run main.nf \ --cache ${HOME}/.conda/envs \ --fastq_input .github/data/fastq \ --ref .github/data/assemblies/NC_000962.3.fa \ + --mincov 6 \ --outdir .github/data/test_output \ -with-report .github/data/test_output/nextflow_report.html \ -with-trace .github/data/test_output/nextflow_trace.tsv From 04b190cbd691828193198884b2ef06a4fb4a24bf Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Wed, 21 Feb 2024 16:48:28 -0800 Subject: [PATCH 4/7] Add status badge --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index fbaa471..2391d4c 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,5 @@ +[![Tests](https://github.com/BCCDC-PHL/snippy-variants/actions/workflows/tests.yml/badge.svg)](https://github.com/BCCDC-PHL/snippy-variants/actions/workflows/tests.yml) + # snippy-variants Perform read mapping and variant calling using [snippy](https://github.com/tseemann/snippy). From 8dde2a033661b7246d35b3337a06f71a9be5a50e Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Thu, 22 Feb 2024 09:14:57 -0800 Subject: [PATCH 5/7] Simulate reads at lower depth --- .github/scripts/simulate_reads.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/scripts/simulate_reads.sh b/.github/scripts/simulate_reads.sh index 7001cce..bfa1d38 100755 --- a/.github/scripts/simulate_reads.sh +++ b/.github/scripts/simulate_reads.sh @@ -13,7 +13,7 @@ while IFS=',' read -r sample_id assembly; do art_illumina \ --paired \ --in ${assembly} \ - --fcov 12 \ + --fcov 10 \ --len 150 \ --mflen 400 \ --sdev 100 \ From 8736cd62571c2b21b4dcc7384c0464380d08f5d4 Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Thu, 22 Feb 2024 14:38:58 -0800 Subject: [PATCH 6/7] Copy work dir to artifacts on failure --- .github/workflows/tests.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 4cd8e15..e6d0eb7 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -35,6 +35,9 @@ jobs: run: bash .github/scripts/simulate_reads.sh - name: Run Pipeline run: bash .github/scripts/run_pipeline.sh + - name: Copy work dir to artifacts + if: failure() + run: cp -r work artifacts/ - name: Create Output Checking Environment run: bash .github/scripts/create_output_checking_environment.sh - name: Check Outputs From 3600ff7f5b00f7ebd83ced5c139e263762cb538d Mon Sep 17 00:00:00 2001 From: Dan Fornika Date: Thu, 22 Feb 2024 14:39:40 -0800 Subject: [PATCH 7/7] Move work dir to artifacts on failure --- .github/workflows/tests.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index e6d0eb7..dc5780c 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -37,7 +37,7 @@ jobs: run: bash .github/scripts/run_pipeline.sh - name: Copy work dir to artifacts if: failure() - run: cp -r work artifacts/ + run: mv work artifacts/work - name: Create Output Checking Environment run: bash .github/scripts/create_output_checking_environment.sh - name: Check Outputs