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Remove automatic Nextclade dataset updates and improve provenance tracking #38

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Remove automatic Nextclade dataset updates and improve provenance tracking #38

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Fixes: #37

@jpalmer37 jpalmer37 requested a review from dfornika July 30, 2024 18:33
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The above changes now produce a provenance section that looks as follows:

- process_name: nextclade
  tools:
    - tool_name: nextclade
      tool_version: 3.8.1
      subcommand: run
  databases:
    - database_name: nextclade_flu_h3n2_ha 
      database_path: /path/to/nextclade/dataset/h3n2_ha/latest/ 
      database_sha256: a11110dbfec4b476304a68183b169776c74f2702b761dd648713fbf0d9337438

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@dfornika dfornika Awaiting requested review from dfornika

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Revert automated Nextclade dataset retrieval in favour of fixed datasets and regimented updates
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@jpalmer37