NAMESPACE

# Generated by roxygen2: do not edit by hand

export(callMethylation)
export(extractPatterns)
export(generateAmpliconReport)
export(generateBedEcdf)
export(generateBedReport)
export(generateCaptureReport)
export(generateCytosineReport)
export(generateMhlReport)
export(generateVcfReport)
export(plotPatterns)
export(preprocessBam)
export(preprocessGenome)
export(simulateBam)
importFrom(BiocGenerics,sort)
importFrom(BiocGenerics,width)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,seqnames)
importFrom(Rcpp,evalCpp)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,merge.data.table)
importFrom(data.table,setDT)
importFrom(data.table,setattr)
importFrom(data.table,setkey)
importFrom(data.table,setorder)
importFrom(methods,is)
importFrom(stats,density)
importFrom(stats,ecdf)
importFrom(stats,setNames)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,packageVersion)
useDynLib(epialleleR, .registration=TRUE)