From 90f50c6ad0330fe2d8401827e72e442ff19e7129 Mon Sep 17 00:00:00 2001
From: github-actions <github-actions@github.com>
Date: Fri, 12 Apr 2024 01:28:20 +0000
Subject: [PATCH] Updated the data.yml sourced from
 australianbiocommons.github.io

---
 _data/data.yaml | 3618 ++++++++++-------------------------------------
 1 file changed, 724 insertions(+), 2894 deletions(-)

diff --git a/_data/data.yaml b/_data/data.yaml
index 09f7637..ab29a9a 100644
--- a/_data/data.yaml
+++ b/_data/data.yaml
@@ -16,6 +16,7 @@
       scaffolds
     url: https://doi.org/10.1126/science.aal3327
   registry-link: 3d-dna
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -47,6 +48,7 @@
   pawsey: ''
   publications: ''
   registry-link: ABRicate
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -72,66 +74,10 @@
   - title: 10.1101/gr.214346.116
     url: https://doi.org/10.1101/gr.214346.116
   registry-link: abyss
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: aggregate_scores_in_intervals2
-  license: ''
-  name: aggregate_scores_in_intervals2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: allhic
-  bunya: ''
-  description: Genome scaffolding based on HiC data in heterozygous and high ploidy
-    genomes
-  galaxy: ''
-  homepage: https://github.com/tanghaibao/allhic
-  id: allhic
-  license: BSD-2-Clause
-  name: allhic
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Assembly of allele-aware, chromosomal-scale autopolyploid genomes based
-      on Hi-C data
-    url: https://doi.org/10.1038/s41477-019-0487-8
-  registry-link: allhic
-  resource-documentation: .nan
-  topics:
-  - Data mining
-  - Machine learning
-- biocontainers: allpaths-lg
-  bunya: ''
-  description: Short read assembler that works on both small and large (mammalian
-    size) genomes.
-  galaxy: ''
-  homepage: https://www.broadinstitute.org/computational-rd/computational-research-and-development
-  id: allpathslg
-  license: MIT
-  name: allpathslg
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: High-quality draft assemblies of mammalian genomes from massively parallel
-      sequence data
-    url: https://doi.org/10.1073/pnas.1017351108
-  registry-link: allpaths-lg
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-  - Genetic variation
 - biocontainers: amber
   bunya: ''
   description: 'The Assisted Model Building with Energy Refinement tool refers to
@@ -160,6 +106,7 @@
   - title: An overview of the Amber biomolecular simulation package
     url: https://doi.org/10.1002/wcms.1121
   registry-link: amber
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular modelling
@@ -185,29 +132,11 @@
   - title: The Amber biomolecular simulation programs
     url: http://www.ncbi.nlm.nih.gov/pubmed/16200636
   registry-link: ambertools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular modelling
   - Molecular dynamics
-- biocontainers: amos
-  bunya: ''
-  description: AMOS is a Modular, Open-Source whole genome assembler.
-  galaxy: ''
-  homepage: http://amos.sourceforge.net/
-  id: amos
-  license: ''
-  name: amos
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Comparative genome assembly.
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15383210
-  registry-link: amos
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Sequence assembly
 - biocontainers: anaconda
   bunya:
   - '2022.05'
@@ -229,33 +158,11 @@
       primary structure features
     url: http://www.ncbi.nlm.nih.gov/pubmed/16538282
   registry-link: anaconda
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
   - Gene expression
-- biocontainers: angsd
-  bunya: ''
-  description: Software for analyzing next generation sequencing data. The software
-    can handle a number of different input types from mapped reads to imputed genotype
-    probabilities. Most methods take genotype uncertainty into account instead of
-    basing the analysis on called genotypes. This is especially useful for low and
-    medium depth data.
-  galaxy: ''
-  homepage: http://www.popgen.dk/angsd
-  id: angsd
-  license: GPL-2.0
-  name: ANGSD
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'ANGSD: Analysis of Next Generation Sequencing Data'
-    url: https://doi.org/10.1186/s12859-014-0356-4
-  registry-link: angsd
-  resource-documentation: .nan
-  topics:
-  - Population genetics
-  - Statistics and probability
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -281,6 +188,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: annotatemyids
@@ -304,6 +212,7 @@
   pawsey: ''
   publications: ''
   registry-link: annotatemyids
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: antismash
@@ -336,6 +245,7 @@
   - title: 10.1093/NAR/GKAA978
     url: https://doi.org/10.1093/NAR/GKAA978
   registry-link: antismash
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular interactions, pathways and networks
@@ -354,6 +264,7 @@
   pawsey: ''
   publications: ''
   registry-link: any2fasta
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data quality management
@@ -375,6 +286,7 @@
   - title: 'Apollo: a sequence annotation editor.'
     url: http://www.ncbi.nlm.nih.gov/pubmed/12537571
   registry-link: apollo
+  resource-description: Apollo Portal
   resource-documentation: https://apollo-portal.genome.edu.au/
   topics:
   - Data submission, annotation and curation
@@ -400,6 +312,7 @@
   - title: ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
     url: https://doi.org/10.1093/nar/gkh152
   registry-link: aragorn
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Functional, regulatory and non-coding RNA
@@ -418,6 +331,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: Arriba
@@ -445,66 +359,12 @@
   pawsey: ''
   publications: ''
   registry-link: Arriba
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene transcripts
   - RNA splicing
   - DNA structural variation
-- biocontainers: artemis
-  bunya: ''
-  description: Free genome browser and annotation tool that allows visualisation of
-    sequence features, next generation data and the results of analyses within the
-    context of the sequence, and also its six-frame translation.
-  galaxy: ''
-  homepage: http://www.sanger.ac.uk/science/tools/artemis
-  id: artemis
-  license: ''
-  name: Artemis
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Artemis: An integrated platform for visualization and analysis of high-throughput
-      sequence-based experimental data'
-    url: https://doi.org/10.1093/bioinformatics/btr703
-  - title: 'Artemis and ACT: Viewing, annotating and comparing sequences stored in
-      a relational database'
-    url: https://doi.org/10.1093/bioinformatics/btn529
-  - title: Viewing and annotating sequence data with Artemis.
-    url: https://doi.org/10.1093/bib/4.2.124
-  - title: 'Artemis: Sequence visualization and annotation'
-    url: https://doi.org/10.1093/bioinformatics/16.10.944
-  registry-link: artemis
-  resource-documentation: .nan
-  topics:
-  - Data visualisation
-- biocontainers: astral
-  bunya: ''
-  description: Java program for estimating a species tree given a set of unrooted
-    gene trees.
-  galaxy: ''
-  homepage: https://github.com/smirarab/ASTRAL
-  id: astral
-  license: ''
-  name: ASTRAL
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'ASTRAL-II: Coalescent-based species tree estimation with many hundreds
-      of taxa and thousands of genes'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/26072508
-  - title: 'ASTRAL: Genome-scale coalescent-based species tree estimation'
-    url: https://doi.org/10.1093/bioinformatics/btu462
-  - title: 'ASTRAL-III: Polynomial time species tree reconstruction from partially
-      resolved gene trees'
-    url: https://doi.org/10.1186/s12859-018-2129-y
-  registry-link: astral
-  resource-documentation: .nan
-  topics:
-  - Phylogenetics
-  - Molecular genetics
-  - Statistics and probability
 - biocontainers: augustus
   bunya:
   - 3.4.0-foss-2021a
@@ -552,6 +412,7 @@
   - title: Multi-genome annotation with AUGUSTUS
     url: https://doi.org/10.1007/978-1-4939-9173-0_8
   registry-link: augustus
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene transcripts
@@ -588,6 +449,7 @@
   - title: 10.1002/jcc.21334
     url: https://doi.org/10.1002/jcc.21334
   registry-link: autodock_vina
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Drug discovery
@@ -611,49 +473,12 @@
   - title: 10.1099/mgen.0.000685
     url: https://doi.org/10.1099/mgen.0.000685
   registry-link: bakta
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Data submission, annotation and curation
   - Sequence analysis
-- biocontainers: bamkit
-  bunya: ''
-  description: Bamkit is a collection of tools for common BAM file manipulations
-  galaxy: ''
-  homepage: https://github.com/hall-lab/bamkit
-  id: bamkit
-  license: MIT
-  name: bamkit
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: bamkit
-  resource-documentation: .nan
-  topics:
-  - Sequence analysis
-- biocontainers: bamm
-  bunya: ''
-  description: 'de-novo motif discovery and regulatory sequence analysis.
-
-    Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)'
-  galaxy: ''
-  homepage: https://bammmotif.mpibpc.mpg.de
-  id: bamm
-  license: AGPL-3.0
-  name: bamm
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: The BaMM web server for de-novo motif discovery and regulatory sequence
-      analysis
-    url: https://doi.org/10.1093/nar/gky431
-  registry-link: bamm
-  resource-documentation: .nan
-  topics:
-  - Sequence sites, features and motifs
-  - ChIP-seq
 - biocontainers: bamtools
   bunya:
   - 2.5.2-gcc-10.3.0
@@ -683,6 +508,7 @@
   - title: 'Bamtools: A C++ API and toolkit for analyzing and managing BAM files'
     url: http://www.ncbi.nlm.nih.gov/pubmed/21493652
   registry-link: bamtools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -707,6 +533,7 @@
       refinement from population-scale DNA sequence data
     url: https://doi.org/10.1101/gr.176552.114
   registry-link: bamutil
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data management
@@ -733,25 +560,11 @@
   - title: 10.1093/bioinformatics/btv383
     url: https://doi.org/10.1093/bioinformatics/btv383
   registry-link: bandage
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Sequence assembly
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: barchart_gnuplot
-  license: ''
-  name: barchart_gnuplot
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: barrnap
   bunya: ''
   description: Predict the location of ribosomal RNA genes in genomes. It supports
@@ -770,6 +583,7 @@
   pawsey: ''
   publications: ''
   registry-link: barrnap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -789,6 +603,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bbmap
@@ -813,6 +628,7 @@
   - 38.96--h5c4e2a8_0
   publications: ''
   registry-link: bbmap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -848,6 +664,7 @@
       and bioinformatics'
     url: https://doi.org/10.1093/bioinformatics/btp163
   registry-link: gff3_rebase
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bcftools
@@ -980,6 +797,7 @@
   - title: Twelve years of SAMtools and BCFtools
     url: https://doi.org/10.1093/gigascience/giab008
   registry-link: bcftools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -1000,6 +818,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: beagle
@@ -1026,6 +845,7 @@
   - title: A One-Penny Imputed Genome from Next-Generation Reference Panels
     url: https://doi.org/10.1016/j.ajhg.2018.07.015
   registry-link: beagle
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Population genetics
@@ -1049,6 +869,7 @@
       library for statistical phylogenetics'
     url: https://doi.org/10.1093/sysbio/syr100
   registry-link: beagle-lib
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -1080,6 +901,7 @@
   - title: 'BEAST: Bayesian evolutionary analysis by sampling trees'
     url: https://doi.org/10.1186/1471-2148-7-214
   registry-link: beast
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -1107,25 +929,11 @@
   - title: 'BEAST 2: A Software Platform for Bayesian Evolutionary Analysis'
     url: https://doi.org/10.1371/JOURNAL.PCBI.1003537
   registry-link: beast2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
   - Phylogenomics
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: bed_to_bigBed
-  license: ''
-  name: bed_to_bigBed
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: bed_to_protein_map
   bunya: ''
   description: Convert a BED format file of the proteins from a proteomics search
@@ -1143,6 +951,7 @@
   pawsey: ''
   publications: ''
   registry-link: bed_to_protein_map
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Literature and language
@@ -1162,6 +971,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bedtools
@@ -1321,6 +1131,7 @@
   - title: 'BEDTools: A flexible suite of utilities for comparing genomic features'
     url: http://www.ncbi.nlm.nih.gov/pubmed/20110278
   registry-link: bedtools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -1352,6 +1163,7 @@
       chimeras
     url: https://doi.org/10.1002/ECE3.5571
   registry-link: Bellerophon
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
@@ -1375,6 +1187,7 @@
   pawsey: ''
   publications: ''
   registry-link: berokka
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computer science
@@ -1397,21 +1210,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://www.yumpu.com/en/document/view/3851346/bio-roll-users-guide-rocks-clusters
-  id: bio-roll
-  license: ''
-  name: bio-roll
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -1429,6 +1228,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bio3d
@@ -1460,6 +1260,7 @@
   - title: The Bio3D packages for structural bioinformatics
     url: https://doi.org/10.1002/PRO.3923
   registry-link: bio3d
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Structure analysis
@@ -1479,6 +1280,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: biobambam
@@ -1498,35 +1300,10 @@
   - title: 'Biobambam: Tools for read pair collation based algorithms on BAM files'
     url: https://doi.org/10.1186/1751-0473-9-13
   registry-link: biobambam
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
-- biocontainers: bioconductor
-  bunya: ''
-  description: Open development software project, based on the R programming language,
-    providing tools for the analysis of high-throughput genomic data. The project
-    aims to enable interdisciplinary research, collaboration and rapid development
-    of scientific software.
-  galaxy: ''
-  homepage: http://www.bioconductor.org
-  id: bioconductor
-  license: ''
-  name: bioconductor
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1186/gb-2004-5-10-r80
-    url: https://doi.org/10.1186/gb-2004-5-10-r80
-  - title: Orchestrating high-throughput genomic analysis with Bioconductor
-    url: https://doi.org/10.1038/nmeth.3252
-  registry-link: bioconductor
-  resource-documentation: .nan
-  topics:
-  - Bioinformatics
-  - Computational biology
-  - Data management
-  - Statistics and probability
 - biocontainers: ''
   bunya:
   - 3.01-gcc-11.3.0
@@ -1541,21 +1318,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://github.com/Bio-Linux
-  id: biolinux
-  license: ''
-  name: biolinux
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: biomformat
@@ -1584,6 +1347,7 @@
   - title: Orchestrating high-throughput genomic analysis with Bioconductor
     url: https://doi.org/10.1038/nmeth.3252
   registry-link: biomformat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Laboratory information management
@@ -1604,6 +1368,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bioperl
@@ -1625,6 +1390,7 @@
   - title: An introduction to BioPerl
     url: https://doi.org/10.1007/978-1-59745-535-0_26
   registry-link: bioperl
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -1661,6 +1427,7 @@
       and bioinformatics'
     url: http://www.ncbi.nlm.nih.gov/pubmed/19304878
   registry-link: biopython
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Bioinformatics
@@ -1687,6 +1454,7 @@
       products
     url: https://doi.org/10.1093/NAR/GKAC313
   registry-link: biotransformer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Small molecules
@@ -1694,27 +1462,6 @@
   - Metabolomics
   - Carbohydrates
   - NMR
-- biocontainers: bismark
-  bunya: ''
-  description: Bismark is a tool to map bisulfite treated sequencing reads and perform
-    methylation calling in a quick and easy-to-use fashion.
-  galaxy: ''
-  homepage: https://github.com/FelixKrueger/Bismark
-  id: bismark
-  license: GPL-3.0
-  name: bismark
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/21493656
-  registry-link: bismark
-  resource-documentation: .nan
-  topics:
-  - Epigenomics
-  - Genomics
-  - Epigenetics
 - biocontainers: blast
   bunya:
   - 2.11.0-linux_x86_64
@@ -1745,6 +1492,7 @@
   - title: 'BLAST: a more efficient report with usability improvements.'
     url: https://doi.org/10.1093/nar/gkt282
   registry-link: blast
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -1831,33 +1579,7 @@
   - title: 'BLAST: a more efficient report with usability improvements.'
     url: https://doi.org/10.1093/nar/gkt282
   registry-link: blast
-  resource-documentation: .nan
-  topics:
-  - Sequence analysis
-  - Bioinformatics
-- biocontainers: blast
-  bunya: ''
-  description: A tool that finds regions of similarity between biological sequences.
-    The program compares nucleotide or protein sequences to sequence databases and
-    calculates the statistical significance.
-  galaxy: ''
-  homepage: https://blast.ncbi.nlm.nih.gov/Blast.cgi
-  id: blast2
-  license: ''
-  name: BLAST2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Basic local alignment search tool
-    url: https://doi.org/10.1016/S0022-2836(05)80360-2
-  - title: Benchmarking the next generation of homology inference tools
-    url: https://doi.org/10.1093/bioinformatics/btw305
-  - title: 'NCBI BLAST: a better web interface.'
-    url: https://doi.org/10.1093/nar/gkn201
-  - title: 'BLAST: a more efficient report with usability improvements.'
-    url: https://doi.org/10.1093/nar/gkt282
-  registry-link: blast
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -1879,6 +1601,7 @@
   - title: BLAT - The BLAST-like alignment tool
     url: http://www.ncbi.nlm.nih.gov/pubmed/11932250
   registry-link: blat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -1901,6 +1624,7 @@
   - title: Evidence for human microRNA-offset RNAs in small RNA sequencing data
     url: https://doi.org/10.1093/bioinformatics/btp419
   registry-link: blockbuster
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -1921,6 +1645,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -1937,6 +1662,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: boost
@@ -1961,6 +1687,7 @@
   pawsey: ''
   publications: ''
   registry-link: boost
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Pure mathematics
@@ -1993,6 +1720,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: bowtie
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -2036,6 +1764,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: bowtie2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -2057,6 +1786,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -2073,6 +1803,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: braker1
@@ -2096,32 +1827,12 @@
       and AUGUSTUS'
     url: http://www.ncbi.nlm.nih.gov/pubmed/26559507
   registry-link: braker1
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
   - RNA
   - Workflows
-- biocontainers: breakdancer
-  bunya: ''
-  description: Application for detecting structural rearrangements and indels in short
-    read sequencing data.
-  galaxy: ''
-  homepage: http://sourceforge.net/projects/breakdancer/
-  id: breakdancer
-  license: GPL-3.0
-  name: breakdancer
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'BreakDancer: An algorithm for high-resolution mapping of genomic structural
-      variation'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/19668202
-  registry-link: breakdancer
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - DNA structural variation
 - biocontainers: breseq
   bunya: ''
   description: Runs Breseq software on a set of fastq files.
@@ -2146,50 +1857,12 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: breseq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
   - Sequence analysis
   - DNA mutation
-- biocontainers: bsmap
-  bunya: ''
-  description: short reads mapping software for bisulfite sequencing
-  galaxy: ''
-  homepage: https://code.google.com/archive/p/bsmap/
-  id: bsmap
-  license: GPL-3.0
-  name: bsmap
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'BSMAP: Whole genome bisulfite sequence MAPping program'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/19635165
-  registry-link: bsmap
-  resource-documentation: .nan
-  topics:
-  - Epigenetics
-- biocontainers: bs-seeker2
-  bunya: ''
-  description: A versatile aligning pipeline for bisulfite sequencing data.
-  galaxy: ''
-  homepage: http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2/
-  id: bsseeker2
-  license: MIT
-  name: bsseeker2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'BS-Seeker2: A versatile aligning pipeline for bisulfite sequencing data'
-    url: https://doi.org/10.1186/1471-2164-14-774
-  registry-link: bs-seeker2
-  resource-documentation: .nan
-  topics:
-  - Methylated DNA immunoprecipitation
-  - Sequencing
-  - Mapping
-  - Nucleic acid structure analysis
 - biocontainers: busco
   bunya:
   - 5.4.2-foss-2021a
@@ -2220,6 +1893,7 @@
   - title: 10.1093/molbev/msab199
     url: https://doi.org/10.1093/molbev/msab199
   registry-link: busco
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -2243,6 +1917,7 @@
   - title: Accelerated nanopore basecalling with SLOW5 data format
     url: https://doi.org/10.1093/BIOINFORMATICS/BTAD352
   registry-link: buttery_eel
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computer science
@@ -2288,6 +1963,7 @@
   - title: Fast and accurate long-read alignment with Burrows-Wheeler transform
     url: https://doi.org/10.1093/bioinformatics/btp698
   registry-link: bwa
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -2310,6 +1986,7 @@
   - title: Efficient architecture-aware acceleration of BWA-MEM for multicore systems
     url: https://doi.org/10.1109/IPDPS.2019.00041
   registry-link: bwa-mem2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -2329,6 +2006,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -2345,6 +2023,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: bx-python
@@ -2401,6 +2080,7 @@
   pawsey: ''
   publications: ''
   registry-link: bx-python
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -2432,6 +2112,7 @@
   - title: 'C3: Consensus Cancer Driver Gene Caller'
     url: https://doi.org/10.1016/J.GPB.2018.10.004
   registry-link: C3
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -2465,6 +2146,7 @@
   - title: Cactus graphs for genome comparisons
     url: https://doi.org/10.1089/cmb.2010.0252
   registry-link: cactus
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -2499,6 +2181,7 @@
       of liquid chromatography/mass spectrometry data sets'
     url: https://doi.org/10.1021/ac202450g
   registry-link: camera
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -2530,6 +2213,7 @@
       \ weighting and repeat separation"
     url: https://doi.org/10.1101/gr.215087.116
   registry-link: canu
+  resource-description: Testing & optimisation on Gadi (NCI)
   resource-documentation: https://github.com/AustralianBioCommons/Canu
   topics:
   - Genomics
@@ -2551,6 +2235,7 @@
   - title: 'CAP3: A DNA sequence assembly program'
     url: http://www.ncbi.nlm.nih.gov/pubmed/10508846
   registry-link: cap3
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -2603,6 +2288,7 @@
   - title: 10.1093/bioinformatics/btv146
     url: https://doi.org/10.1093/bioinformatics/btv146
   registry-link: cardinal
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -2636,27 +2322,13 @@
       with CAT and BAT
     url: https://doi.org/10.1186/s13059-019-1817-x
   registry-link: cat_bins
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
   - Metagenomic sequencing
   - Taxonomy
   - Sequence assembly
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: cat1
-  license: ''
-  name: cat1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: cd-hit
   bunya:
   - 4.8.1-gcc-10.3.0
@@ -2689,6 +2361,7 @@
   - title: 10.1093/bioinformatics/btq003
     url: https://doi.org/10.1093/bioinformatics/btq003
   registry-link: cd-hit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -2709,29 +2382,12 @@
   - title: 'CEL-Seq2: Sensitive highly-multiplexed single-cell RNA-Seq'
     url: https://doi.org/10.1186/s13059-016-0938-8
   registry-link: celseq2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
   - Transcriptomics
-- biocontainers: cabog
-  bunya: ''
-  description: Celera Assembler is scientific software for DNA research.
-  galaxy: ''
-  homepage: http://wgs-assembler.sourceforge.net/
-  id: celera
-  license: ''
-  name: Celera / wgs-assembler
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Aggressive assembly of pyrosequencing reads with mates
-    url: http://www.ncbi.nlm.nih.gov/pubmed/18952627
-  registry-link: cabog
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-- biocontainers: CellProfiler
+- biocontainers: CellProfiler
   bunya: ''
   description: Tool for quantifying data from biological images, particularly in high-throughput
     experiments.
@@ -2819,6 +2475,7 @@
   - title: 'ImageJ and CellProfiler: Complements in Open-Source Bioimage Analysis'
     url: https://doi.org/10.1002/cpz1.89
   registry-link: CellProfiler
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Imaging
@@ -2839,6 +2496,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: cellxgene
@@ -2861,25 +2519,11 @@
   - title: 10.1101/2021.04.05.438318
     url: https://doi.org/10.1101/2021.04.05.438318
   registry-link: cellxgene
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
   - Cell biology
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: ChangeCase
-  license: ''
-  name: ChangeCase
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: checkm
   bunya:
   - 1.1.3-foss-2021a
@@ -2899,6 +2543,7 @@
       single cells, and metagenomes'
     url: https://doi.org/10.1101/gr.186072.114
   registry-link: checkm
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -2925,31 +2570,7 @@
       single cells, and metagenomes'
     url: https://doi.org/10.1101/gr.186072.114
   registry-link: checkm
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Phylogenomics
-  - Phylogenetics
-  - Taxonomy
-  - Metagenomics
-  - Data quality management
-- biocontainers: checkm
-  bunya: ''
-  description: CheckM provides a set of tools for assessing the quality of genomes
-    recovered from isolates, single cells, or metagenomes.
-  galaxy: ''
-  homepage: https://ecogenomics.github.io/CheckM
-  id: checkm-genome
-  license: GPL-3.0
-  name: checkm-genome
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'CheckM: Assessing the quality of microbial genomes recovered from isolates,
-      single cells, and metagenomes'
-    url: https://doi.org/10.1101/gr.186072.114
-  registry-link: checkm
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -2987,6 +2608,7 @@
   - title: 'The European Bioinformatics Institute in 2016: Data growth and integration'
     url: https://doi.org/10.1093/nar/gkv1352
   registry-link: chembl
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Small molecules
@@ -3031,6 +2653,7 @@
   - title: The chemfp project
     url: https://doi.org/10.1186/s13321-019-0398-8
   registry-link: chemfp
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Cheminformatics
@@ -3070,6 +2693,7 @@
       on the Galaxy platform'
     url: https://doi.org/10.1186/S13321-020-00442-7
   registry-link: chemicaltoolbox
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Cheminformatics
@@ -3100,6 +2724,7 @@
       and visualization'
     url: https://doi.org/10.1093/bioinformatics/btv145
   registry-link: chipseeker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - ChIP-seq
@@ -3124,26 +2749,11 @@
   - title: Ultra-fast genome comparison for large-scale genomic experiments
     url: https://doi.org/10.1038/s41598-019-46773-w
   registry-link: chromeister
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Comparative genomics
   - Sequence analysis
-- biocontainers: chunkchromosome
-  bunya: ''
-  description: ChunkChromosome is a helper utility for minimac and MaCH. It can be
-    used to facilitate analyses of very large datasets in overlapping slices.
-  galaxy: ''
-  homepage: https://genome.sph.umich.edu/wiki/ChunkChromosome
-  id: chunkchromosome
-  license: ''
-  name: chunkchromosome
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: chunkchromosome
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -3160,6 +2770,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3176,6 +2787,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: circos
@@ -3240,6 +2852,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: circos
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Comparative genomics
@@ -3260,6 +2873,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3278,6 +2892,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: clinker
@@ -3320,6 +2935,7 @@
   - title: 10.1101/2020.11.08.370650
     url: https://doi.org/10.1101/2020.11.08.370650
   registry-link: clinker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular interactions, pathways and networks
@@ -3342,6 +2958,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: clustalo
@@ -3366,6 +2983,7 @@
   - title: 10.1002/0471250953.bi0313s48
     url: https://doi.org/10.1002/0471250953.bi0313s48
   registry-link: clustalo
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -3400,46 +3018,10 @@
   - title: 'CLUSTAL: a package for performing multiple sequence alignment on a microcomputer'
     url: https://doi.org/10.1016/0378-1119(88)90330-7
   registry-link: clustalw
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
-- biocontainers: clusteringsuite
-  bunya: ''
-  description: The ClusteringSuite is the software package that includes the cluster
-    analysis tool.
-  galaxy: ''
-  homepage: https://github.com/bsc-performance-tools/clustering-suite
-  id: clusteringsuite
-  license: ''
-  name: clusteringsuite
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: clusteringsuite
-  resource-documentation: .nan
-  topics:
-  - Statistics and probability
-- biocontainers: cnvkit
-  bunya: ''
-  description: CNVkit is a software toolkit to infer and visualize copy number from
-    targeted DNA sequencing data.
-  galaxy: ''
-  homepage: https://github.com/etal/cnvkit
-  id: cnvkit
-  license: BSD-3-Clause
-  name: CNVkit
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted
-      DNA Sequencing'
-    url: https://doi.org/10.1371/journal.pcbi.1004873
-  registry-link: cnvkit
-  resource-documentation: .nan
-  topics:
-  - DNA structural variation
 - biocontainers: colabfold
   bunya: ''
   description: ColabFold databases are MMseqs2 expandable profile databases to generate
@@ -3460,6 +3042,7 @@
   - title: 10.1101/2021.08.15.456425
     url: https://doi.org/10.1101/2021.08.15.456425
   registry-link: colabfold
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Protein folds and structural domains
@@ -3484,6 +3067,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3502,36 +3086,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Convert characters1
-  license: ''
-  name: Convert characters1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: CONVERTER_neostorezip_to_neostore
-  license: ''
-  name: CONVERTER_neostorezip_to_neostore
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3548,6 +3103,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3566,6 +3122,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: cpat
@@ -3592,27 +3149,13 @@
       Model
     url: https://doi.org/10.1007/978-1-0716-1158-6_3
   registry-link: cpat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Functional, regulatory and non-coding RNA
   - Gene transcripts
   - RNA-Seq
   - Transcription factors and regulatory sites
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: createInterval
-  license: ''
-  name: createInterval
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: Crisflash
   bunya:
   - 1.2.0        star-ccm+
@@ -3631,6 +3174,7 @@
       genomes annotated with individual variation'
     url: https://doi.org/10.1093/bioinformatics/btz019
   registry-link: Crisflash
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -3651,6 +3195,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3672,6 +3217,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: cuDNN
@@ -3694,6 +3240,7 @@
   pawsey: ''
   publications: ''
   registry-link: cuDNN
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Machine learning
@@ -3742,6 +3289,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: cufflinks
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA splicing
@@ -3768,6 +3316,7 @@
       experiments with TopHat and Cufflinks (Nature Protocols (2012) 7 (562-578))'
     url: https://doi.org/10.1038/nprot.2012.016
   registry-link: cummerbund
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -3792,26 +3341,12 @@
       RNA-Seq data for proteomics search'
     url: https://doi.org/10.1093/bioinformatics/btt543
   registry-link: customprodb
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data integration and warehousing
   - RNA-Seq
   - Sequencing
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Cut1
-  license: ''
-  name: Cut1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: cutadapt
   bunya:
   - 3.4-gcccore-10.3.0
@@ -3837,6 +3372,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: cutadapt
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -3872,35 +3408,12 @@
   - title: Long-read-based human genomic structural variation detection with cuteSV
     url: https://doi.org/10.1186/s13059-020-02107-y
   registry-link: cuteSV
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA structural variation
   - Sequencing
   - Computer science
-- biocontainers: cytoscape
-  bunya: ''
-  description: Open source software platform for visualizing molecular interaction
-    networks and biological pathways and integrating these networks with annotations,
-    gene expression profiles and other state data.
-  galaxy: ''
-  homepage: http://www.cytoscape.org/
-  id: cytoscape
-  license: ''
-  name: cytoscape
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Cytoscape: A software Environment for integrated models of biomolecular
-      interaction networks'
-    url: https://doi.org/10.1101/gr.1239303
-  registry-link: cytoscape
-  resource-documentation: .nan
-  topics:
-  - Bioinformatics
-  - Molecular interactions, pathways and networks
-  - Data visualisation
-  - Rare diseases
 - biocontainers: dada2
   bunya: ''
   description: This package infers exact sequence variants (SVs) from amplicon data,
@@ -3954,6 +3467,7 @@
   - title: 10.1038/nmeth.3869
     url: https://doi.org/10.1038/nmeth.3869
   registry-link: dada2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -3974,6 +3488,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -3992,6 +3507,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -4010,6 +3526,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -4026,6 +3543,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -4042,6 +3560,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -4058,6 +3577,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: deeptools
@@ -4143,35 +3663,11 @@
   - title: 'DeepTools: A flexible platform for exploring deep-sequencing data'
     url: http://www.ncbi.nlm.nih.gov/pubmed/24799436
   registry-link: deeptools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - ChIP-seq
-- biocontainers: deepvariant
-  bunya: ''
-  description: DeepVariant is a deep learning-based variant caller that takes aligned
-    reads (in BAM or CRAM format), produces pileup image tensors from them, classifies
-    each tensor using a convolutional neural network, and finally reports the results
-    in a standard VCF or gVCF file.
-  galaxy: ''
-  homepage: https://github.com/google/deepvariant
-  id: deepvariant
-  license: BSD-3-Clause
-  name: deepvariant
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Accurate, scalable cohort variant calls using DeepVariant and GLnexus
-    url: https://doi.org/10.1093/BIOINFORMATICS/BTAA1081
-  registry-link: deepvariant
-  resource-documentation: .nan
-  topics:
-  - Whole genome sequencing
-  - Exome sequencing
-  - Genotype and phenotype
-  - Genomics
-  - DNA polymorphism
 - biocontainers: dendropy
   bunya:
   - 4.5.2-gcccore-10.3.0
@@ -4192,6 +3688,7 @@
   - title: 'DendroPy: A Python library for phylogenetic computing'
     url: https://doi.org/10.1093/bioinformatics/btq228
   registry-link: dendropy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -4212,6 +3709,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: deseq2
@@ -4237,6 +3735,7 @@
       DESeq2
     url: https://doi.org/10.1186/s13059-014-0550-8
   registry-link: deseq2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -4249,15 +3748,15 @@
     biological replicates and generalized linear models for testing. The package also
     provides functions for the visualization and exploration of the results.
   galaxy:
-  - description: 'DEXSeq-Count: Prepare and count exon abundancies from RNA-seq data'
-    title: DEXSeq-Count 1.44+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fdexseq_count%2F1.44%2Bgalaxy0
-  - description: 'DEXSeq: Determines differential exon usage from count tables'
-    title: DEXSeq 1.44+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fdexseq%2F1.44%2Bgalaxy0
   - description: 'plotDEXSeq: Visualization of the per gene DEXSeq results'
-    title: plotDEXSeq 1.44+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fplotdexseq%2F1.44%2Bgalaxy0
+    title: plotDEXSeq 1.48.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fplotdexseq%2F1.48.0%2Bgalaxy0
+  - description: 'DEXSeq: Determines differential exon usage from count tables'
+    title: DEXSeq 1.48.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fdexseq%2F1.48.0%2Bgalaxy0
+  - description: 'DEXSeq-Count: Prepare and count exon abundancies from RNA-seq data'
+    title: DEXSeq-Count 1.48.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fdexseq%2Fdexseq_count%2F1.48.0%2Bgalaxy0
   homepage: http://bioconductor.org/packages/release/bioc/html/DEXSeq.html
   id: DEXSeq
   license: GPL-3.0
@@ -4270,6 +3769,7 @@
       species
     url: https://doi.org/10.1073/pnas.1307202110
   registry-link: dexseq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -4291,6 +3791,7 @@
   - title: 10.21203/RS.3.RS-76062/V1
     url: https://doi.org/10.21203/RS.3.RS-76062/V1
   registry-link: dfam
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -4327,6 +3828,7 @@
       coverage in high throughput'
     url: https://doi.org/10.1038/S41592-019-0638-X
   registry-link: DIA-NN
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -4357,6 +3859,7 @@
       acquisition proteomics'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25599550
   registry-link: DIA-Umpire
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -4393,6 +3896,7 @@
   - title: Fast and sensitive protein alignment using DIAMOND
     url: https://doi.org/10.1038/nmeth.3176
   registry-link: diamond
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -4418,6 +3922,7 @@
       \ data-independent acquisition"
     url: https://doi.org/10.1038/S41592-020-00998-0
   registry-link: diapasef
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
@@ -4445,30 +3950,10 @@
   - title: VAV3 mediates resistance to breast cancer endocrine therapy
     url: https://doi.org/10.1186/bcr3664
   registry-link: diffbind
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - ChIP-seq
-- biocontainers: dms_tools2
-  bunya: ''
-  description: dms_tools2 is a software package for analyzing deep mutational scanning
-    data. It is tailored to analyze libraries created using comprehensive codon mutagenesis
-    of protein-coding genes
-  galaxy: ''
-  homepage: https://github.com/jbloomlab/dms_tools2
-  id: dms_tools2
-  license: GPL-3.0
-  name: dms_tools2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Software for the analysis and visualization of deep mutational scanning
-      data
-    url: https://doi.org/10.1186/s12859-015-0590-4
-  registry-link: dms_tools2
-  resource-documentation: .nan
-  topics:
-  - Genetic variation
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -4485,6 +3970,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -4502,6 +3988,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: dropletutils
@@ -4528,35 +4015,13 @@
   - title: 10.1101/177048
     url: https://doi.org/10.1101/177048
   registry-link: dropletutils
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
   - RNA-seq
   - Sequencing
   - Transcriptomics
-- biocontainers: dssp
-  bunya: ''
-  description: DSSP secondary structure database . It produces secondary structure
-    assignments (and much more) for all protein entries in the Protein Data Bank (PDB).
-  galaxy: ''
-  homepage: http://swift.cmbi.ru.nl/gv/dssp/
-  id: dssp
-  license: BSD-2-Clause
-  name: dssp
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: A series of PDB-related databanks for everyday needs
-    url: https://doi.org/10.1093/nar/gku1028
-  - title: "Dictionary of protein secondary structure: Pattern recognition of hydrogen\u2010\
-      bonded and geometrical features"
-    url: http://www.ncbi.nlm.nih.gov/pubmed/6667333
-  registry-link: dssp
-  resource-documentation: .nan
-  topics:
-  - Proteins
-  - Protein secondary structure
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -4590,6 +4055,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: eagleimp
@@ -4608,6 +4074,7 @@
   - title: 10.1101/2022.01.11.475810
     url: https://doi.org/10.1101/2022.01.11.475810
   registry-link: eagleimp
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genotype and phenotype
@@ -4631,6 +4098,7 @@
   pawsey: ''
   publications: ''
   registry-link: easybuild
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computer science
@@ -4650,30 +4118,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: edena
-  bunya: ''
-  description: A program for assembling de novo bacterial genomes from short reads
-    produced by Illumina sequencing platform.
-  galaxy: ''
-  homepage: http://www.genomic.ch/edena
-  id: edena
-  license: GPL-3.0
-  name: Edena
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'De novo bacterial genome sequencing: Millions of very short reads assembled
-      on a desktop computer'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/18332092
-  registry-link: edena
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Microbiology
-  - Sequence assembly
 - biocontainers: edger
   bunya: ''
   description: Differential expression analysis of RNA-seq expression profiles with
@@ -4704,6 +4151,7 @@
       experiments using Rsubread and the edgeR quasi-likelihood pipeline'
     url: https://doi.org/10.12688/f1000research.8987.2
   registry-link: edger
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -4740,6 +4188,7 @@
       experiments using Rsubread and the edgeR quasi-likelihood pipeline'
     url: https://doi.org/10.12688/f1000research.8987.2
   registry-link: edger
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -4762,6 +4211,7 @@
   pawsey: ''
   publications: ''
   registry-link: edirect
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data integration and warehousing
@@ -4804,6 +4254,7 @@
       Prediction at the Metagenomic Scale'
     url: https://doi.org/10.1093/molbev/msab293
   registry-link: eggnog-mapper
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -4828,6 +4279,7 @@
       analyses
     url: https://doi.org/10.1093/bioinformatics/btw623
   registry-link: egsea
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Systems biology
@@ -4872,6 +4324,7 @@
       Cancer
     url: https://doi.org/10.3389/FONC.2019.01297
   registry-link: elastix
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Medical imaging
@@ -5216,6 +4669,7 @@
   - title: 'EMBOSS: The European Molecular Biology Open Software Suite'
     url: http://www.ncbi.nlm.nih.gov/pubmed/10827456
   registry-link: emboss
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular biology
@@ -5229,9 +4683,10 @@
     both as the database of record for the output of the world's sequencing activity
     and as a platform for the management, sharing and publication of sequence data.
   galaxy:
-  - description: 'ENA Upload tool: '
-    title: ENA Upload tool 0.6.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fena_upload%2Fena_upload%2F0.6.3%2Bgalaxy0
+  - description: 'ENA Upload tool: Submission of (meta)data to the European Nucleotide
+      Archive (ENA)'
+    title: ENA Upload tool 0.7.1+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fena_upload%2Fena_upload%2F0.7.1%2Bgalaxy1
   - description: 'ENA upload table builder: create tables for the ENA upload tool
       from metadata templates'
     title: ENA upload table builder 0.1.0+galaxy0
@@ -5249,6 +4704,7 @@
   - title: 10.1093/BIOINFORMATICS/BTAB421
     url: https://doi.org/10.1093/BIOINFORMATICS/BTAB421
   registry-link: ena
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data submission, annotation and curation
@@ -5289,6 +4745,7 @@
       data independent acquisition mass spectrometry
     url: http://www.ncbi.nlm.nih.gov/pubmed/30510204
   registry-link: EncyclopeDIA
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -5307,45 +4764,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: ensembl
-  bunya: ''
-  description: Genome databases for vertebrates genomes.
-  galaxy: ''
-  homepage: http://www.ensembl.org/
-  id: ensembl
-  license: ''
-  name: Ensembl browser
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Ensembl 2015
-    url: https://doi.org/10.1093/nar/gku1010
-  - title: The Ensembl genome database project
-    url: https://doi.org/10.1093/nar/30.1.38
-  - title: 10.1093/nar/gkh038
-    url: https://doi.org/10.1093/nar/gkh038
-  - title: 'Ensembl 2002: Accommodating comparative genomics'
-    url: https://doi.org/10.1093/nar/gkg083
-  - title: Ensembl 2005
-    url: https://doi.org/10.1093/nar/gki138
-  - title: Ensembl 2006.
-    url: https://doi.org/10.1093/nar/gkj133
-  - title: Ensembl 2007
-    url: https://doi.org/10.1093/nar/gkl996
-  - title: Ensembl 2008
-    url: https://doi.org/10.1093/nar/gkm988
-  - title: Ensembl 2009
-    url: https://doi.org/10.1093/nar/gkn828
-  - title: Ensembl's 10th year
-    url: https://doi.org/10.1093/nar/gkp972
-  registry-link: ensembl
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Rare diseases
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -5360,6 +4781,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5376,6 +4798,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5394,6 +4817,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: eupathdb
@@ -5417,35 +4841,13 @@
   - title: 'EuPathDB: A portal to eukaryotic pathogen databases'
     url: http://www.ncbi.nlm.nih.gov/pubmed/19914931
   registry-link: eupathdb
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Model organisms
   - Model organisms
   - Zoology
   - Gene transcripts
-- biocontainers: eval
-  bunya: ''
-  description: Eval is a flexible tool for analyzing the performance of gene-structure
-    prediction programs. It provides summaries and graphical distributions for many
-    statistics describing any set of annotations, regardless of their source. It also
-    compares sets of predictions to standard annotations and to one another.
-  galaxy: ''
-  homepage: https://mblab.wustl.edu/software.html
-  id: eval
-  license: ''
-  name: eval
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Eval: A software package for analysis of genome annotations'
-    url: https://doi.org/10.1186/1471-2105-4-50
-  registry-link: eval
-  resource-documentation: .nan
-  topics:
-  - Gene transcripts
-  - Statistics and probability
-  - Genomics
 - biocontainers: exabayes
   bunya: ''
   description: ExaBayes is a software package for Bayesian phylogenetic tree inference.
@@ -5461,6 +4863,7 @@
   - 1.5.1
   publications: ''
   registry-link: exabayes
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -5480,6 +4883,7 @@
   - title: 'ExaML version 3: A tool for phylogenomic analyses on supercomputers'
     url: https://doi.org/10.1093/bioinformatics/btv184
   registry-link: ExaML
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogeny
@@ -5507,6 +4911,7 @@
   - title: Automated generation of heuristics for biological sequence comparison
     url: http://www.ncbi.nlm.nih.gov/pubmed/15713233
   registry-link: exonerate
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -5528,6 +4933,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: export2graphlan
@@ -5551,6 +4957,7 @@
       GraPhlAn
     url: https://doi.org/10.7717/peerj.1029
   registry-link: export2graphlan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Taxonomy
@@ -5582,27 +4989,13 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: express
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
   - Metagenomics
   - RNA-seq
   - ChIP-seq
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Extract_features1
-  license: ''
-  name: Extract_features1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya:
   - 1.1--h0326b38_1
@@ -5618,26 +5011,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: falcon
-  bunya: ''
-  description: Experimental PacBio diploid assembler.
-  galaxy: ''
-  homepage: https://github.com/pratas/falcon
-  id: falcon
-  license: ''
-  name: Falcon
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.5281/zenodo.35745
-    url: https://doi.org/10.5281/zenodo.35745
-  registry-link: falcon
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
 - biocontainers: falcon
   bunya:
   - 0.0.8--hdfd78af_1
@@ -5654,6 +5030,7 @@
   - title: 10.5281/zenodo.35745
     url: https://doi.org/10.5281/zenodo.35745
   registry-link: falcon
+  resource-description: Install, optimisation and testing at Pawsey
   resource-documentation: https://github.com/AustralianBioCommons/falcon
   topics:
   - Sequence assembly
@@ -5678,6 +5055,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: compute_sequence_length
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Nucleic acids
@@ -5699,21 +5077,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: fasta_extract
-  license: ''
-  name: fasta_extract
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5732,6 +5096,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5751,6 +5116,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5769,6 +5135,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5787,6 +5154,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -5803,6 +5171,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: fastani
@@ -5822,33 +5191,11 @@
   pawsey: ''
   publications: ''
   registry-link: fastani
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Microbiology
   - Genetic variation
-- biocontainers: fastml
-  bunya: ''
-  description: FastML is a webserver for computing and reconstructing ancestral sequences
-    using maximum likelihood.
-  galaxy: ''
-  homepage: http://fastml.tau.ac.il/
-  id: fastml
-  license: ''
-  name: fastml
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'FastML: A web server for probabilistic reconstruction of ancestral sequences'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/22661579
-  registry-link: fastml
-  resource-documentation: .nan
-  topics:
-  - Phylogeny
-  - Statistics and probability
-  - Sequencing
-  - Sequence analysis
-  - Experimental design and studies
 - biocontainers: fastool
   bunya:
   - 0.1.4--h7132678_6
@@ -5864,6 +5211,7 @@
   pawsey: ''
   publications: ''
   registry-link: fastool
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data management
@@ -5889,25 +5237,11 @@
   - title: 10.1093/bioinformatics/bty560
     url: https://doi.org/10.1093/bioinformatics/bty560
   registry-link: fastp
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
   - Probes and primers
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: fastq_quality_boxplot
-  license: ''
-  name: fastq_quality_boxplot
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: fastqc
   bunya:
   - 0.11.9-java-11
@@ -5936,6 +5270,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: fastqc
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -5957,50 +5292,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: faststructure
-  bunya: ''
-  description: fastStructure is an algorithm for inferring population structure from
-    large SNP genotype data. It is based on a variational Bayesian framework for posterior
-    inference and is written in Python2.x.
-  galaxy: ''
-  homepage: http://rajanil.github.io/fastStructure/
-  id: faststructure
-  license: MIT
-  name: faststructure
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'FastSTRUCTURE: Variational inference of population structure in large
-      SNP data sets'
-    url: https://doi.org/10.1534/genetics.114.164350
-  registry-link: faststructure
-  resource-documentation: .nan
-  topics:
-  - Population genetics
-- biocontainers: faststructure
-  bunya: ''
-  description: fastStructure is an algorithm for inferring population structure from
-    large SNP genotype data. It is based on a variational Bayesian framework for posterior
-    inference and is written in Python2.x.
-  galaxy: ''
-  homepage: http://rajanil.github.io/fastStructure/
-  id: biocontainers-faststructure
-  license: MIT
-  name: faststructure (biocontainers)
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'FastSTRUCTURE: Variational inference of population structure in large
-      SNP data sets'
-    url: https://doi.org/10.1534/genetics.114.164350
-  registry-link: faststructure
-  resource-documentation: .nan
-  topics:
-  - Population genetics
 - biocontainers: fasttree
   bunya:
   - 2.1.11-gcccore-10.3.0
@@ -6024,6 +5318,7 @@
   - title: 10.1371/journal.pone.0009490
     url: https://doi.org/10.1371/journal.pone.0009490
   registry-link: fasttree
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -6071,6 +5366,7 @@
   - title: Comparison of DNA sequences with protein sequences
     url: https://doi.org/10.1006/geno.1997.4995
   registry-link: fastx-toolkit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -6105,6 +5401,7 @@
   - title: Comparison of DNA sequences with protein sequences
     url: https://doi.org/10.1006/geno.1997.4995
   registry-link: fastx-toolkit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -6122,6 +5419,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: fgenesh
@@ -6143,6 +5441,7 @@
   - title: 10.1186/gb-2006-7-s1-s10
     url: https://doi.org/10.1186/gb-2006-7-s1-s10
   registry-link: fgenesh
+  resource-description: Fgenesh++
   resource-documentation: https://support.pawsey.org.au/documentation/pages/viewpage.action?pageId=68818716
   topics:
   - Gene structure
@@ -6167,6 +5466,7 @@
   - title: 10.1101/060012
     url: https://doi.org/10.1101/060012
   registry-link: fgsea
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -6186,21 +5486,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Filter1
-  license: ''
-  name: Filter1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: filtlong
@@ -6222,6 +5508,7 @@
   pawsey: ''
   publications: ''
   registry-link: filtlong
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: flashlfq
@@ -6242,6 +5529,7 @@
   pawsey: ''
   publications: ''
   registry-link: flashlfq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
@@ -6262,6 +5550,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: Flye
@@ -6294,6 +5583,7 @@
   - title: 'metaFlye: scalable long-read metagenome assembly using repeat graphs'
     url: https://doi.org/10.1038/s41592-020-00971-x
   registry-link: Flye
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -6316,6 +5606,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: foldseek
@@ -6338,6 +5629,7 @@
   - title: 10.1101/2022.02.07.479398
     url: https://doi.org/10.1101/2022.02.07.479398
   registry-link: foldseek
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteins
@@ -6367,6 +5659,7 @@
   - title: 'Fpocket: An open source platform for ligand pocket detection'
     url: http://www.ncbi.nlm.nih.gov/pubmed/19486540
   registry-link: fpocket
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Protein structural motifs and surfaces
@@ -6390,6 +5683,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: fraggenescan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -6417,35 +5711,12 @@
   pawsey: ''
   publications: ''
   registry-link: freebayes
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Genetic variation
   - Rare diseases
-- biocontainers: freesurfer
-  bunya: ''
-  description: Wrapper functions that interface with 'Freesurfer', a powerful and
-    commonly-used 'neuroimaging' software, using system commands. The goal is to be
-    able to interface with 'Freesurfer' completely in R, where you pass R objects
-    of class 'nifti', implemented by package 'oro.nifti', and the function executes
-    an 'Freesurfer' command and returns an R object of class 'nifti' or necessary
-    output.
-  galaxy: ''
-  homepage: https://cran.r-project.org/web/packages/freesurfer/index.html
-  id: freesurfer
-  license: GPL-3.0
-  name: freesurfer
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Freesurfer: Connecting the Freesurfer software with R [version 1; referees:
-      2 approved]'
-    url: https://doi.org/10.12688/f1000research.14361.1
-  registry-link: freesurfer
-  resource-documentation: .nan
-  topics:
-  - MRI
 - biocontainers: ''
   bunya:
   - 20141119-gcccore-10.3.0
@@ -6460,6 +5731,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: funannotate
@@ -6491,6 +5763,7 @@
   pawsey: ''
   publications: ''
   registry-link: funannotate
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -6523,6 +5796,7 @@
   pawsey: ''
   publications: ''
   registry-link: gaeval
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -6589,6 +5863,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6614,6 +5889,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6653,6 +5929,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6671,6 +5948,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6689,6 +5967,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6720,6 +5999,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6727,8 +6007,8 @@
   description: ''
   galaxy:
   - description: 'Number lines: '
-    title: Number lines 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Fnl%2F9.3%2Bgalaxy0
+    title: Number lines 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Fnl%2F9.3%2Bgalaxy1
   - description: 'Column Regex Find And Replace: '
     title: Column Regex Find And Replace 1.0.3
     url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fgalaxyp%2Fregex_find_replace%2FregexColumn1%2F1.0.3
@@ -6816,6 +6096,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6882,6 +6163,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -6912,6 +6194,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gatk
@@ -6941,6 +6224,7 @@
       DNA sequencing data'
     url: http://www.ncbi.nlm.nih.gov/pubmed/20644199
   registry-link: gatk
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -6970,6 +6254,7 @@
       phylogenetic analysis
     url: https://doi.org/10.1093/oxfordjournals.molbev.a026334
   registry-link: gblocks
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -6993,6 +6278,7 @@
   - title: 'GCTA: A tool for genome-wide complex trait analysis'
     url: https://doi.org/10.1016/j.ajhg.2010.11.011
   registry-link: gcta
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - GWAS study
@@ -7016,6 +6302,7 @@
   - title: Breaking the computational barriers of pairwise genome comparison
     url: https://doi.org/10.1186/s12859-015-0679-9
   registry-link: gecko
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -7118,6 +6405,7 @@
   - title: 10.1371/journal.pcbi.1003153
     url: https://doi.org/10.1371/journal.pcbi.1003153
   registry-link: gemini
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -7143,6 +6431,7 @@
       and fungi
     url: https://doi.org/10.1186/s12859-018-2203-5
   registry-link: gemoma
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -7163,6 +6452,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -7182,33 +6472,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: geneid
-  bunya: ''
-  description: Ab initio gene finding program used to predict genes along DNA sequences
-    in a large set of organisms.
-  galaxy: ''
-  homepage: http://genome.crg.es/software/geneid/index.html
-  id: geneid
-  license: GPL-3.0
-  name: geneid
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Using geneid to identify genes.
-    url: https://doi.org/10.1002/0471250953.bi0403s18
-  - title: GeneId in Drosophila
-    url: https://doi.org/10.1101/gr.10.4.511
-  registry-link: geneid
-  resource-documentation: .nan
-  topics:
-  - Nucleic acid sites, features and motifs
-  - Sequence analysis
-  - DNA
-  - Gene structure
-  - Molecular genetics
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -7225,6 +6491,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -7243,6 +6510,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -7259,6 +6527,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: GenomeScope_2.0
@@ -7285,6 +6554,7 @@
   - title: 10.1101/747568
     url: https://doi.org/10.1101/747568
   registry-link: GenomeScope_2.0
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -7307,34 +6577,11 @@
       of structured genome annotations'
     url: https://doi.org/10.1109/TCBB.2013.68
   registry-link: genometools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Nucleic acid sites, features and motifs
   - Sequence analysis
-- biocontainers: genomicfeatures
-  bunya: ''
-  description: A set of tools and methods for making and manipulating transcript centric
-    annotations. With these tools the user can easily download the genomic locations
-    of the transcripts, exons and CDS of a given organism, from either the UCSC Genome
-    Browser or a BioMart database. This information is then stored in a local database
-    that keeps track of the relationship between transcripts, exons, CDS and genes.
-  galaxy: ''
-  homepage: http://bioconductor.org/packages/release/bioc/html/GenomicFeatures.html
-  id: genomicfeatures
-  license: Artistic-2.0
-  name: genomicfeatures
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Software for Computing and Annotating Genomic Ranges
-    url: https://doi.org/10.1371/journal.pcbi.1003118
-  registry-link: genomicfeatures
-  resource-documentation: .nan
-  topics:
-  - ChIP-seq
-  - RNA-seq
-  - Data management
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -7351,6 +6598,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -7369,6 +6617,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: getorganelle
@@ -7394,6 +6643,7 @@
       of organelle genomes'
     url: https://doi.org/10.1186/S13059-020-02154-5
   registry-link: getorganelle
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Cell biology
@@ -7418,6 +6668,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gfastats
@@ -7439,54 +6690,10 @@
   pawsey: ''
   publications: ''
   registry-link: gfastats
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computational biology
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: gff
-  license: ''
-  name: gff
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: gff_filter_by_attribute
-  license: ''
-  name: gff_filter_by_attribute
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: gff_filter_by_feature_count
-  license: ''
-  name: gff_filter_by_feature_count
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -7503,6 +6710,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -7519,6 +6727,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gffcompare
@@ -7539,6 +6748,7 @@
   pawsey: ''
   publications: ''
   registry-link: gffcompare
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Nucleic acids
@@ -7559,6 +6769,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gffread
@@ -7579,6 +6790,7 @@
   pawsey: ''
   publications: ''
   registry-link: gffread
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Nucleic acids
@@ -7616,6 +6828,7 @@
   - title: 10.1007/978-3-319-24277-4
     url: https://doi.org/10.1007/978-3-319-24277-4
   registry-link: ggplot2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data visualisation
@@ -7634,56 +6847,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: glimmer
-  bunya: ''
-  description: System for finding genes in microbial DNA, especially the genomes of
-    bacteria, archaea, and viruses. It uses interpolated Markov models (IMMs) to identify
-    the coding regions and distinguish them from noncoding DNA.
-  galaxy: ''
-  homepage: https://ccb.jhu.edu/software/glimmer/
-  id: glimmer
-  license: ''
-  name: glimmer
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Identifying bacterial genes and endosymbiont DNA with Glimmer
-    url: https://doi.org/10.1093/bioinformatics/btm009
-  - title: Improved microbial gene identification with GLIMMER
-    url: https://doi.org/10.1093/nar/27.23.4636
-  - title: Microbial gene identification using interpolated Markov models
-    url: https://doi.org/10.1093/nar/26.2.544
-  registry-link: glimmer
-  resource-documentation: .nan
-  topics:
-  - Gene structure
-- biocontainers: glimmer-hmm
-  bunya: ''
-  description: A new gene finder based on a Generalized Hidden Markov Model. Although
-    the gene finder conforms to the overall mathematical framework of a GHMM, additionally
-    it incorporates splice site models adapted from the GeneSplicer program and a
-    decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models
-    for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes
-    introns of each phase, intergenic regions, and four types of exons.
-  galaxy: ''
-  homepage: https://ccb.jhu.edu/software/glimmerhmm/
-  id: glimmerhmm
-  license: Artistic-1.0
-  name: glimmerhmm
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'TigrScan and GlimmerHMM: Two open source ab initio eukaryotic gene-finders'
-    url: https://doi.org/10.1093/bioinformatics/bth315
-  registry-link: glimmer-hmm
-  resource-documentation: .nan
-  topics:
-  - Gene structure
-  - Genomics
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -7700,6 +6866,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gmap
@@ -7720,64 +6887,10 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: gmap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
-- biocontainers: gmap
-  bunya: ''
-  description: Genomic Mapping and Alignment Program for mRNA and EST Sequences.
-  galaxy: ''
-  homepage: http://research-pub.gene.com/gmap/
-  id: biocontainers-gmap
-  license: ''
-  name: gmap (biocontainers)
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'GMAP: A genomic mapping and alignment program for mRNA and EST sequences'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15728110
-  - title: 10.7490/f1000research.1114334.1
-    url: https://doi.org/10.7490/f1000research.1114334.1
-  registry-link: gmap
-  resource-documentation: .nan
-  topics:
-  - Mapping
-- biocontainers: gmap
-  bunya: ''
-  description: Genomic Mapping and Alignment Program for mRNA and EST Sequences.
-  galaxy: ''
-  homepage: http://research-pub.gene.com/gmap/
-  id: gmap_gsnap
-  license: ''
-  name: gmap_gsnap
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'GMAP: A genomic mapping and alignment program for mRNA and EST sequences'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15728110
-  - title: 10.7490/f1000research.1114334.1
-    url: https://doi.org/10.7490/f1000research.1114334.1
-  registry-link: gmap
-  resource-documentation: .nan
-  topics:
-  - Mapping
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://www.gnu.org/
-  id: gnu
-  license: ''
-  name: GNU
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: parallel
   bunya:
   - 20210622-gcccore-10.3.0
@@ -7799,6 +6912,7 @@
   pawsey: ''
   publications: ''
   registry-link: parallel
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gsl
@@ -7818,6 +6932,7 @@
   pawsey: ''
   publications: ''
   registry-link: gsl
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: goenrichment
@@ -7849,6 +6964,7 @@
   pawsey: ''
   publications: ''
   registry-link: goenrichment
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
@@ -7871,31 +6987,10 @@
   - title: 10.1186/gb-2010-11-2-r14
     url: https://doi.org/10.1186/gb-2010-11-2-r14
   registry-link: goseq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
-- biocontainers: graftm
-  bunya: ''
-  description: Scalable, phylogenetically informed classification of genes within
-    metagenomes.
-  galaxy: ''
-  homepage: https://pypi.org/project/graftm/
-  id: graftm
-  license: GPL-3.0
-  name: GraftM
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'GraftM: a tool for scalable, phylogenetically informed classification
-      of genes within metagenomes'
-    url: https://doi.org/10.1093/nar/gky174
-  registry-link: graftm
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Metagenomics
-  - Transcriptomics
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -7912,6 +7007,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: graphlan
@@ -7939,27 +7035,13 @@
       GraPhlAn
     url: https://doi.org/10.7717/peerj.1029
   registry-link: graphlan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
   - Phylogenetics
   - Phylogenomics
   - Cladistics
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Grep1
-  license: ''
-  name: Grep1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: gromacs
   bunya:
   - 2021.3-foss-2021a
@@ -8055,30 +7137,10 @@
   - title: 'More bang for your buck: Improved use of GPU nodes for GROMACS 2018'
     url: https://doi.org/10.1002/jcc.26011
   registry-link: gromacs
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular dynamics
-- biocontainers: groopm
-  bunya: ''
-  description: GroopM is an automated tool for the recovery of population genomes
-    from related metagenomes.
-  galaxy: ''
-  homepage: http://ecogenomics.github.io/GroopM
-  id: groopm
-  license: GPL-3.0
-  name: groopm
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'GroopM: An automated tool for the recovery of population genomes from
-      related metagenomes'
-    url: https://doi.org/10.7717/peerj.603
-  registry-link: groopm
-  resource-documentation: .nan
-  topics:
-  - Metagenomics
-  - Sequence assembly
 - biocontainers: GTDB-Tk
   bunya:
   - 2.0.0-foss-2021a
@@ -8111,6 +7173,7 @@
   - title: 'GTDB-Tk: A toolkit to classify genomes with the genome taxonomy database'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTZ848
   registry-link: GTDB-Tk
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -8118,21 +7181,6 @@
   - Phylogenetics
   - Database management
   - Proteins
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: gtf_filter_by_attribute_values_list
-  license: ''
-  name: gtf_filter_by_attribute_values_list
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -8149,6 +7197,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -8168,6 +7217,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: gubbins
@@ -8188,27 +7238,13 @@
   publications:
   - title: 10.1093/nar/gku1196
     url: https://doi.org/10.1093/nar/gku1196
-  registry-link: gubbins
-  resource-documentation: .nan
-  topics:
-  - Phylogeny
-  - Genotype and phenotype
-  - Whole genome sequencing
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: guppy
-  license: ''
-  name: guppy
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  registry-link: gubbins
+  resource-description: .nan
   resource-documentation: .nan
-  topics: ''
+  topics:
+  - Phylogeny
+  - Genotype and phenotype
+  - Whole genome sequencing
 - biocontainers: ''
   bunya:
   - 1.10-gcccore-10.3.0
@@ -8227,29 +7263,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: hadoop
-  bunya: ''
-  description: The Apache Hadoop software library is a framework that allows for the
-    distributed processing of large data sets across clusters of computers using simple
-    programming models. It is designed to scale up from single servers to thousands
-    of machines, each offering local computation and storage.
-  galaxy: ''
-  homepage: https://hadoop.apache.org/
-  id: hadoop
-  license: Apache-2.0
-  name: Hadoop
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: hadoop
-  resource-documentation: .nan
-  topics:
-  - Computer science
-  - Data mining
-  - Machine learning
 - biocontainers: hapcut2
   bunya: ''
   description: 'HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes
@@ -8270,6 +7286,7 @@
   pawsey: ''
   publications: ''
   registry-link: hapcut2
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -8288,26 +7305,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: hclust2
-  bunya: ''
-  description: Hclust2 is a handy tool for plotting heat-maps with several useful
-    options to produce high quality figures that can be used in publication.
-  galaxy: ''
-  homepage: https://github.com/SegataLab/hclust2
-  id: hclust2
-  license: MIT
-  name: Hclust2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: hclust2
-  resource-documentation: .nan
-  topics:
-  - Microbiology
-  - Metagenomics
 - biocontainers: heinz
   bunya: ''
   description: Tool for single-species active module discovery.
@@ -8336,6 +7336,7 @@
       flexible conservation model'
     url: http://www.ncbi.nlm.nih.gov/pubmed/26023104
   registry-link: heinz
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -8366,6 +7367,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: hgv_david
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Ontology and terminology
@@ -8395,6 +7397,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: hgv_ldtools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -8426,6 +7429,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: hgv_linktogprofile
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Ontology and terminology
@@ -8467,6 +7471,7 @@
       and single-cell Hi-C data analysis, quality control and visualization'
     url: https://doi.org/10.1093/NAR/GKAA220
   registry-link: hicexplorer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Workflows
@@ -8497,6 +7502,7 @@
       on genome assembly
     url: https://doi.org/10.1186/s12864-022-08375-1
   registry-link: hifiadapterfilt
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -8525,6 +7531,7 @@
   - title: Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
     url: https://doi.org/10.1038/s41592-020-01056-5
   registry-link: hifiasm
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -8544,6 +7551,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: hisat2
@@ -8575,6 +7583,7 @@
   - title: Simulation-based comprehensive benchmarking of RNA-seq aligners
     url: https://doi.org/10.1038/nmeth.4106
   registry-link: hisat2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-seq
@@ -8594,6 +7603,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -8610,6 +7620,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: hmmer3
@@ -8677,6 +7688,7 @@
   - title: 'HMMER web server: 2018 update'
     url: https://doi.org/10.1093/nar/gky448
   registry-link: hmmer3
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -8699,6 +7711,7 @@
   pawsey: ''
   publications: ''
   registry-link: horovod
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Machine learning
@@ -8723,6 +7736,7 @@
   - title: HTSeq-A Python framework to work with high-throughput sequencing data
     url: https://doi.org/10.1093/bioinformatics/btu638
   registry-link: htseq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -8750,6 +7764,7 @@
   - title: 'HTSlib: C library for reading/writing high-Throughput sequencing data'
     url: https://doi.org/10.1093/gigascience/giab007
   registry-link: htslib
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data management
@@ -8814,6 +7829,7 @@
       microbial communities with biobakery 3
     url: https://doi.org/10.7554/eLife.65088
   registry-link: humann
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -8858,6 +7874,7 @@
   - title: Species-level functional profiling of metagenomes and metatranscriptomes
     url: https://doi.org/10.1038/s41592-018-0176-y
   registry-link: humann2
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -8876,6 +7893,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: HyPhy
@@ -8902,30 +7920,12 @@
   - title: 10.1093/bioinformatics/bti079
     url: https://doi.org/10.1093/bioinformatics/bti079
   registry-link: HyPhy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogeny
   - Small molecules
   - Molecular interactions, pathways and networks
-- biocontainers: idba
-  bunya: ''
-  description: A short read assembler based on iterative De Bruijn graph. It is developed
-    under 64-bit Linux, but should be suitable for all unix-like system.
-  galaxy: ''
-  homepage: https://i.cs.hku.hk/%7Ealse/idba
-  id: idba-ud
-  license: Unlicense
-  name: idba-ud
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1007/978-3-642-12683-3_28
-    url: https://doi.org/10.1007/978-3-642-12683-3_28
-  registry-link: idba
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -8941,6 +7941,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -8959,6 +7960,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ipa_hifi
@@ -8978,6 +7980,7 @@
   pawsey: ''
   publications: ''
   registry-link: ipa_hifi
+  resource-description: Install and testing at Pawsey
   resource-documentation: https://github.com/AustralianBioCommons/ipa
   topics:
   - Sequence assembly
@@ -9021,6 +8024,7 @@
   - title: 'Infernal 1.1: 100-fold faster RNA homology searches'
     url: https://doi.org/10.1093/bioinformatics/btt509
   registry-link: infernal
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence sites, features and motifs
@@ -9039,6 +8043,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: igv
@@ -9066,6 +8071,7 @@
       Viewer (IGV)'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTAC830
   registry-link: igv
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -9093,6 +8099,7 @@
       and Smart Strategy of Integrase and Gene Cassette Expression Regulation'
     url: https://doi.org/10.3390/microorganisms10020224
   registry-link: integron_finder
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Functional genomics
@@ -9115,6 +8122,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -9133,6 +8141,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: interproscan_4
@@ -9156,6 +8165,7 @@
   - title: Search and sequence analysis tools services from EMBL-EBI in 2022
     url: https://doi.org/10.1093/nar/gkac240
   registry-link: interproscan_4
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene and protein families
@@ -9176,6 +8186,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -9194,6 +8205,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -9212,6 +8224,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ipyrad
@@ -9235,6 +8248,7 @@
   - title: 'Ipyrad: Interactive assembly and analysis of RADseq datasets'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTZ966
   registry-link: ipyrad
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -9264,6 +8278,7 @@
   - title: 'W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis'
     url: http://www.ncbi.nlm.nih.gov/pubmed/27084950
   registry-link: iq-tree
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -9292,6 +8307,7 @@
       2 approved]'
     url: https://doi.org/10.12688/f1000research.14966.1
   registry-link: isee
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
@@ -9316,27 +8332,13 @@
       genomes'
     url: https://doi.org/10.1093/bioinformatics/btx433
   registry-link: isescan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - DNA structural variation
   - Sequence analysis
   - Genetic variation
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: islandpath
-  license: ''
-  name: islandpath
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: isoformswitchanalyzer
   bunya: ''
   description: Enables identification of isoform switches with predicted functional
@@ -9359,6 +8361,7 @@
   - title: The landscape of isoform switches in human cancers
     url: https://doi.org/10.1158/1541-7786.MCR-16-0459
   registry-link: isoformswitchanalyzer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computational biology
@@ -9380,6 +8383,7 @@
   pawsey: ''
   publications: ''
   registry-link: isoseq3
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene transcripts
@@ -9422,6 +8426,7 @@
   - title: 10.22541/AU.160610419.99549785/V1
     url: https://doi.org/10.22541/AU.160610419.99549785/V1
   registry-link: ivar
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Biological databases
@@ -9455,6 +8460,7 @@
       locations and scales'
     url: https://doi.org/10.1093/bioinformatics/bty090
   registry-link: iwtomics
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Statistics and probability
@@ -9473,6 +8479,7 @@
   pawsey: ''
   publications: ''
   registry-link: jags
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Statistics and probability
@@ -9500,6 +8507,7 @@
   - title: 10.1101/2021.05.27.445886
     url: https://doi.org/10.1101/2021.05.27.445886
   registry-link: jasmine-sv
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Structural variation
@@ -9521,6 +8529,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -9538,6 +8547,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: jbrowse
@@ -9564,6 +8574,7 @@
   - title: 10.1101/gr.094607.109
     url: https://doi.org/10.1101/gr.094607.109
   registry-link: jbrowse
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -9583,6 +8594,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: jellyfish
@@ -9606,6 +8618,7 @@
   - title: 10.1093/bioinformatics/btr011
     url: https://doi.org/10.1093/bioinformatics/btr011
   registry-link: jellyfish
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -9626,6 +8639,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -9644,29 +8658,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: juicebox
-  bunya: ''
-  description: Juicebox is visualization software for Hi-C data.
-  galaxy: ''
-  homepage: https://aidenlab.org/juicebox/
-  id: juicebox
-  license: MIT
-  name: juicebox
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
-    url: https://doi.org/10.1016/j.cels.2016.07.002
-  registry-link: juicebox
-  resource-documentation: .nan
-  topics:
-  - Epigenetics
-  - Sequencing
-  - Mapping
-  - Sequence assembly
 - biocontainers: juicer
   bunya:
   - '1.6'
@@ -9685,6 +8679,7 @@
   - title: Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
     url: https://doi.org/10.1016/j.cels.2016.07.002
   registry-link: juicer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -9706,6 +8701,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: kallisto
@@ -9735,6 +8731,7 @@
   - title: Near-optimal probabilistic RNA-seq quantification
     url: https://doi.org/10.1038/nbt.3519
   registry-link: kallisto
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
@@ -9758,6 +8755,7 @@
       assemblies'
     url: https://doi.org/10.1093/bioinformatics/btw663
   registry-link: kat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -9776,6 +8774,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: khmer
@@ -9833,26 +8832,10 @@
   - title: 10.7287/peerj.preprints.890v1
     url: https://doi.org/10.7287/peerj.preprints.890v1
   registry-link: khmer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
-- biocontainers: kingfisher
-  bunya: ''
-  description: Easier download/extract of FASTA/Q read data and metadata from the
-    ENA, NCBI, AWS or GCP.
-  galaxy: ''
-  homepage: https://github.com/wwood/kingfisher-download
-  id: kingfisher
-  license: GPL-3.0
-  name: Kingfisher
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: kingfisher
-  resource-documentation: .nan
-  topics:
-  - Nucleic acids
 - biocontainers: kmc
   bunya: ''
   description: KMC is a utility designed for counting k-mers (sequences of consecutive
@@ -9870,6 +8853,7 @@
   - title: 'KMC 2: Fast and resource-frugal k-mer counting'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25609798
   registry-link: kmc
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Whole genome sequencing
@@ -9889,6 +8873,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: kraken
@@ -9940,6 +8925,7 @@
   - title: 'Kraken: Ultrafast metagenomic sequence classification using exact alignments'
     url: https://doi.org/10.1186/gb-2014-15-3-r46
   registry-link: kraken
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Taxonomy
@@ -9968,6 +8954,7 @@
   - title: 10.1101/762302
     url: https://doi.org/10.1101/762302
   registry-link: kraken2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Taxonomy
@@ -10001,6 +8988,7 @@
   pawsey: ''
   publications: ''
   registry-link: krakentools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Taxonomy
@@ -10027,6 +9015,7 @@
   - title: Interactive metagenomic visualization in a Web browser
     url: http://www.ncbi.nlm.nih.gov/pubmed/21961884
   registry-link: krona
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -10044,6 +9033,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: lama
@@ -10071,6 +9061,7 @@
   - title: 10.1101/2020.05.04.075853
     url: https://doi.org/10.1101/2020.05.04.075853
   registry-link: lama
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Tomography
@@ -10101,6 +9092,7 @@
   pawsey: ''
   publications: ''
   registry-link: lastz
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -10120,6 +9112,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10138,6 +9131,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: LFQ-Analyst
@@ -10170,6 +9164,7 @@
       label-free proteomics data preprocessed with maxquant'
     url: https://doi.org/10.1021/ACS.JPROTEOME.9B00496
   registry-link: LFQ-Analyst
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -10193,6 +9188,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: limma
@@ -10215,6 +9211,7 @@
       studies
     url: https://doi.org/10.1093/nar/gkv007
   registry-link: limma
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular biology
@@ -10242,40 +9239,12 @@
       reads'
     url: https://doi.org/10.1186/s13742-015-0076-3
   registry-link: links
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
   - Mapping
   - Sequencing
-- biocontainers: lipid_maps
-  bunya: ''
-  description: LIPID Metabolites And Pathways Strategy (LIPID MAPS) is a consortium
-    that presents a collection of tools for performing tasks such as drawing lipid
-    structures and predicting possible structures from mass spectrometry data.
-  galaxy: ''
-  homepage: http://www.lipidmaps.org/tools/index.html
-  id: lipid_maps
-  license: ''
-  name: Lipid Maps
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'LMSD: LIPID MAPS structure database'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/17098933
-  - title: 'LMPD: LIPID MAPS proteome database.'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/16381922
-  - title: A comprehensive classification system for lipids
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15722563
-  - title: LIPID MAPS online tools for lipid research
-    url: http://www.ncbi.nlm.nih.gov/pubmed/17584797
-  registry-link: lipid_maps
-  resource-documentation: .nan
-  topics:
-  - Lipids
-  - Endocrinology and metabolism
-  - Small molecules
-  - Mapping
 - biocontainers: lofreq
   bunya: ''
   description: LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller
@@ -10311,31 +9280,11 @@
       cell-population heterogeneity from high-throughput sequencing datasets'
     url: https://doi.org/10.1093/nar/gks918
   registry-link: lofreq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Genetic variation
-- biocontainers: longranger
-  bunya: ''
-  description: Long Ranger is a set of five analysis pipelines that processes Chromium
-    sequencing output to align reads and call and phase SNPs, indels, and structural
-    variants.
-  galaxy: ''
-  homepage: https://support.10xgenomics.com/genome-exome/software/pipelines/latest/what-is-long-ranger
-  id: longranger
-  license: Proprietary
-  name: Long Ranger
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: longranger
-  resource-documentation: .nan
-  topics:
-  - Exome sequencing
-  - Genomics
-  - Whole genome sequencing
-  - DNA polymorphism
 - biocontainers: longshot
   bunya: ''
   description: Longshot is a variant calling tool for diploid genomes using long error
@@ -10359,6 +9308,7 @@
       long read sequencing
     url: https://doi.org/10.1038/s41467-019-12493-y
   registry-link: longshot
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -10378,6 +9328,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ltr_retriever
@@ -10399,6 +9350,7 @@
       of long terminal repeat retrotransposons'
     url: https://doi.org/10.1104/pp.17.01310
   registry-link: ltr_retriever
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -10417,50 +9369,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: mach
-  bunya: ''
-  description: Markov Chain based haplotyper that can resolve long haplotypes or infer
-    missing genotypes in samples of unrelated individuals.
-  galaxy: ''
-  homepage: http://csg.sph.umich.edu/abecasis/mach/
-  id: mach
-  license: Not licensed
-  name: mach
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'MaCH: Using sequence and genotype data to estimate haplotypes and unobserved
-      genotypes'
-    url: https://doi.org/10.1002/gepi.20533
-  registry-link: mach
-  resource-documentation: .nan
-  topics:
-  - Genotype and phenotype
-  - Genotyping experiment
-  - Quantitative genetics
-- biocontainers: macs
-  bunya: ''
-  description: Model-based Analysis of ChIP-seq data.
-  galaxy: ''
-  homepage: http://liulab.dfci.harvard.edu/MACS/
-  id: macs
-  license: Artistic-2.0
-  name: macs
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Model-based analysis of ChIP-Seq (MACS)
-    url: http://www.ncbi.nlm.nih.gov/pubmed/18798982
-  registry-link: macs
-  resource-documentation: .nan
-  topics:
-  - ChIP-seq
-  - Molecular interactions, pathways and networks
-  - Transcription factors and regulatory sites
 - biocontainers: macs
   bunya:
   - 2.2.9.1
@@ -10510,6 +9421,7 @@
   - title: Model-based analysis of ChIP-Seq (MACS)
     url: http://www.ncbi.nlm.nih.gov/pubmed/18798982
   registry-link: macs
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - ChIP-seq
@@ -10530,6 +9442,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10549,6 +9462,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10567,6 +9481,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10585,6 +9500,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10603,6 +9519,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10621,6 +9538,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10639,6 +9557,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10657,6 +9576,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10675,6 +9595,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10693,6 +9614,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10711,6 +9633,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10729,6 +9652,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: MAFFT
@@ -10768,6 +9692,7 @@
   - title: 'MAFFT version 5: Improvement in accuracy of multiple sequence alignment'
     url: https://doi.org/10.1093/nar/gki198
   registry-link: MAFFT
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -10805,6 +9730,7 @@
   - title: Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
     url: http://www.ncbi.nlm.nih.gov/pubmed/26673418
   registry-link: mageck
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetics
@@ -10838,6 +9764,7 @@
   - title: 10.1186/1471-2105-12-491
     url: https://doi.org/10.1186/1471-2105-12-491
   registry-link: maker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -10873,6 +9800,7 @@
       data'
     url: https://doi.org/10.1093/bioinformatics/bts447
   registry-link: maldi_quant
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
@@ -10893,6 +9821,7 @@
   - title: 10.1186/s13059-016-0997-x
     url: https://doi.org/10.1186/s13059-016-0997-x
   registry-link: mash
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -10917,6 +9846,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -10936,26 +9866,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: maskrc-svg
-  bunya: ''
-  description: Masks recombinant regions in an alignment based on ClonalFrameML or
-    Gubbins output
-  galaxy: ''
-  homepage: https://github.com/kwongj/maskrc-svg
-  id: maskrc-svg
-  license: GPL-3.0
-  name: maskrc-svg
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: maskrc-svg
-  resource-documentation: .nan
-  topics:
-  - DNA replication and recombination
-  - Structure analysis
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -10972,6 +9885,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: masurca
@@ -10996,6 +9910,7 @@
   - title: The MaSuRCA genome assembler
     url: http://www.ncbi.nlm.nih.gov/pubmed/23990416
   registry-link: masurca
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -11054,6 +9969,7 @@
   pawsey: ''
   publications: ''
   registry-link: matchms
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -11074,28 +9990,9 @@
   pawsey: ''
   publications: ''
   registry-link: matplotlib
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: mauve
-  bunya: ''
-  description: Mauve Genome Alignment software, for comparing two or more draft or
-    finished genomes
-  galaxy: ''
-  homepage: http://darlinglab.org/mauve
-  id: mauve
-  license: GPL-3.0
-  name: Mauve
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Mauve: Multiple alignment of conserved genomic sequence with rearrangements'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15231754
-  registry-link: mauve
-  resource-documentation: .nan
-  topics:
-  - Genomics
-  - Transcriptomics
 - biocontainers: maxbin
   bunya: ''
   description: Software for binning assembled metagenomic sequences based on an Expectation-Maximization
@@ -11115,6 +10012,7 @@
   - title: '26515820'
     url: http://www.ncbi.nlm.nih.gov/pubmed/26515820
   registry-link: maxbin
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11154,35 +10052,7 @@
       Modified by Endogenous SUMO and Ubiquitin
     url: https://doi.org/10.1021/ACS.JPROTEOME.0C00892
   registry-link: maxquant
-  resource-documentation: .nan
-  topics:
-  - Proteomics experiment
-  - Proteomics
-  - Statistics and probability
-- biocontainers: maxquant
-  bunya: ''
-  description: Quantitative proteomics software package designed for analyzing large
-    mass-spectrometric data sets. It is specifically aimed at high-resolution MS data.
-  galaxy: ''
-  homepage: http://www.maxquant.org/
-  id: biocontainers-maxquant
-  license: ''
-  name: MaxQuant (biocontainers)
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Visualization of LC-MS/MS proteomics data in MaxQuant
-    url: https://doi.org/10.1002/pmic.201400449
-  - title: MaxQuant for in-depth analysis of large SILAC datasets
-    url: https://doi.org/10.1007/978-1-4939-1142-4_24
-  - title: MaxQuant enables high peptide identification rates, individualized p.p.b.-range
-      mass accuracies and proteome-wide protein quantification
-    url: https://doi.org/10.1038/nbt.1511
-  - title: MaxQuant.Live Enables Enhanced Selectivity and Identification of Peptides
-      Modified by Endogenous SUMO and Ubiquitin
-    url: https://doi.org/10.1021/ACS.JPROTEOME.0C00892
-  registry-link: maxquant
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
@@ -11205,6 +10075,7 @@
   - title: 10.1007/978-1-61779-361-5_15
     url: https://doi.org/10.1007/978-1-61779-361-5_15
   registry-link: mcl
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular interactions, pathways and networks
@@ -11230,6 +10101,7 @@
   - title: 'MDAnalysis: A toolkit for the analysis of molecular dynamics simulations'
     url: https://doi.org/10.1002/jcc.21787
   registry-link: mdanalysis
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular dynamics
@@ -11253,6 +10125,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: medaka
@@ -11284,6 +10157,7 @@
   pawsey: ''
   publications: ''
   registry-link: medaka
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -11311,6 +10185,7 @@
       assembly via succinct de Bruijn graph'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25609793
   registry-link: megahit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11333,21 +10208,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: mergeCols1
-  license: ''
-  name: mergeCols1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: merqury
@@ -11381,6 +10242,7 @@
   - title: 10.1101/2020.03.15.992941
     url: https://doi.org/10.1101/2020.03.15.992941
   registry-link: merqury
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -11406,6 +10268,7 @@
   - title: 10.1186/s13059-020-02134-9
     url: https://doi.org/10.1186/s13059-020-02134-9
   registry-link: meryl
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Whole genome sequencing
@@ -11438,6 +10301,7 @@
       from complex microbial communities
     url: https://doi.org/10.7717/peerj.1165
   registry-link: MetaBAT_2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11459,30 +10323,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: metacv
-  bunya: ''
-  description: MetaCV is a composition and phylogeny based algorithm to classify very
-    short metagenomic reads (75-100 bp) into specific taxonomic and functional groups.
-    MetaCV performs (for both sensitivity and specificity) as good as BlastX-based
-    methods on simulated short reads, but runs 300 times faster thus provides effectively
-    and efficiently analysis on huge amount of NGS data.
-  galaxy: ''
-  homepage: https://sourceforge.net/projects/metacv/
-  id: metacv
-  license: ''
-  name: metacv
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: metacv
-  resource-documentation: .nan
-  topics:
-  - Metagenomics
-  - Sequencing
-  - Sequence composition, complexity and repeats
 - biocontainers: MetaDEGalaxy
   bunya: ''
   description: 'Galaxy workflow for differential abundance analysis of 16s metagenomic
@@ -11539,6 +10382,7 @@
       metagenomic data'
     url: https://doi.org/10.12688/F1000RESEARCH.18866.2
   registry-link: MetaDEGalaxy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11567,28 +10411,11 @@
   - title: 10.1101/851964
     url: https://doi.org/10.1101/851964
   registry-link: MetaEuk
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
   - Gene and protein families
-- biocontainers: metamaps
-  bunya: ''
-  description: MetaMaps is tool specifically developed for the analysis of long-read
-    (PacBio/Oxford Nanopore) metagenomic datasets.
-  galaxy: ''
-  homepage: https://github.com/DiltheyLab/MetaMaps
-  id: metamaps
-  license: Freeware
-  name: MetaMaps
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: metamaps
-  resource-documentation: .nan
-  topics:
-  - Metagenomics
-  - Sequence composition, complexity and repeats
 - biocontainers: metaphlan
   bunya: ''
   description: Computational tool for profiling the composition of microbial communities
@@ -11618,6 +10445,7 @@
       genes
     url: https://doi.org/10.1038/nmeth.2066
   registry-link: metaphlan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11665,6 +10493,7 @@
   - title: Updates on metaQuantome Software for Quantitative Metaproteomics
     url: https://doi.org/10.1021/ACS.JPROTEOME.0C00960
   registry-link: metaQuantome
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -11696,6 +10525,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: metaspades
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -11723,6 +10553,7 @@
       and Computing Sciences 0806 Information Systems
     url: https://doi.org/10.1186/s40168-018-0541-1
   registry-link: metawrap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Whole genome sequencing
@@ -11744,6 +10575,7 @@
   pawsey: ''
   publications: ''
   registry-link: methyldackel
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Epigenomics
@@ -11764,6 +10596,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: MIGRATE
@@ -11786,6 +10619,7 @@
   - title: Fractional coalescent
     url: https://doi.org/10.1073/pnas.1810239116
   registry-link: MIGRATE
+  resource-description: Install and testing on Gadi (NCI)
   resource-documentation: https://github.com/AustralianBioCommons/migrate
   topics:
   - Population genetics
@@ -11809,6 +10643,7 @@
       annotation
     url: https://doi.org/10.1093/gigascience/giy093
   registry-link: mikado
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-seq
@@ -11882,6 +10717,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: minia
@@ -11904,6 +10740,7 @@
       graphs
     url: https://doi.org/10.1186/1748-7188-9-2
   registry-link: minia
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -11929,6 +10766,7 @@
       sequences'
     url: https://doi.org/10.1093/bioinformatics/btw152
   registry-link: miniasm
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -11948,25 +10786,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: minimac4
-  bunya: ''
-  description: Minimac4 is a genotype imputation software.
-  galaxy: ''
-  homepage: https://genome.sph.umich.edu/wiki/Minimac4
-  id: minimac4
-  license: GPL-3.0
-  name: Minimac4
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: minimac4
-  resource-documentation: .nan
-  topics:
-  - Genotype and phenotype
-  - Sequencing
 - biocontainers: minimap2
   bunya:
   - 2.24-gcccore-11.3.0
@@ -11990,6 +10812,7 @@
   - title: 'Minimap2: Pairwise alignment for nucleotide sequences'
     url: https://doi.org/10.1093/bioinformatics/bty191
   registry-link: minimap2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -12009,6 +10832,7 @@
   pawsey: ''
   publications: ''
   registry-link: miniprot
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence sites, features and motifs
@@ -12030,6 +10854,7 @@
       assembly and SNP detection in sequenced ESTs
     url: http://www.ncbi.nlm.nih.gov/pubmed/15140833
   registry-link: mira
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -12050,6 +10875,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: mirdeep2
@@ -12076,31 +10902,11 @@
   pawsey: ''
   publications: ''
   registry-link: mirdeep2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Functional, regulatory and non-coding RNA
   - RNA immunoprecipitation
-- biocontainers: miso
-  bunya: ''
-  description: An alternative to Cufflinks, MISO (Mixture-of-Isoforms) is a probabilistic
-    framework that quantitates the expression level of alternatively spliced genes.
-  galaxy: ''
-  homepage: http://genes.mit.edu/burgelab/miso/docs/#releases
-  id: miso
-  license: ''
-  name: miso
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Analysis and design of RNA sequencing experiments for identifying isoform
-      regulation
-    url: http://www.ncbi.nlm.nih.gov/pubmed/21057496
-  registry-link: miso
-  resource-documentation: .nan
-  topics:
-  - RNA-Seq
-  - RNA splicing
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -12117,6 +10923,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: mitohifi
@@ -12138,6 +10945,7 @@
       data in target enrichment phylogenomics'
     url: https://doi.org/10.1111/1755-0998.13160
   registry-link: mitohifi
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -12161,6 +10969,7 @@
   - title: 10.1016/j.ympev.2012.08.023
     url: https://doi.org/10.1016/j.ympev.2012.08.023
   registry-link: mitos
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Zoology
@@ -12188,6 +10997,7 @@
   - title: Multilocus sequence typing of total-genome-sequenced bacteria
     url: https://doi.org/10.1128/JCM.06094-11
   registry-link: mlst
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Immunoproteins and antigens
@@ -12229,6 +11039,7 @@
   - title: 10.1093/bioinformatics/btab184
     url: https://doi.org/10.1093/bioinformatics/btab184
   registry-link: MMseqs2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -12270,6 +11081,7 @@
       of host range and epidemiological surveillance
     url: https://doi.org/10.1099/MGEN.0.000435
   registry-link: mob-suite
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mobile genetic elements
@@ -12293,6 +11105,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -12311,6 +11124,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -12329,6 +11143,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: moff
@@ -12349,6 +11164,7 @@
   - title: 'MoFF: A robust and automated approach to extract peptide ion intensities'
     url: https://doi.org/10.1038/nmeth.4075
   registry-link: moff
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -12367,6 +11183,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: morpheus
@@ -12390,6 +11207,7 @@
       tandem mass spectra
     url: https://doi.org/10.1021/pr301024c
   registry-link: morpheus
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -12827,6 +11645,7 @@
   - title: 10.1128/AEM.01541-09
     url: https://doi.org/10.1128/AEM.01541-09
   registry-link: mothur
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Microbial ecology
@@ -12846,33 +11665,19 @@
   homepage: http://www.mousemine.org/mousemine/begin.do
   id: mousemine
   license: ''
-  name: mousemine
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'MouseMine: a new data warehouse for MGI'
-    url: https://doi.org/10.1007/s00335-015-9573-z
-  registry-link: mousemine
-  resource-documentation: .nan
-  topics:
-  - Model organisms
-  - Genotype and phenotype
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: mpiblast
-  license: ''
-  name: mpiBLAST
+  name: mousemine
   nci-gadi: ''
   nci-if89: ''
   pawsey: ''
-  publications: ''
-  registry-link: ''
+  publications:
+  - title: 'MouseMine: a new data warehouse for MGI'
+    url: https://doi.org/10.1007/s00335-015-9573-z
+  registry-link: mousemine
+  resource-description: .nan
   resource-documentation: .nan
-  topics: ''
+  topics:
+  - Model organisms
+  - Genotype and phenotype
 - biocontainers: mrbayes
   bunya:
   - 3.2.7a-foss-2022a
@@ -12897,6 +11702,7 @@
       across a large model space'
     url: https://doi.org/10.1093/sysbio/sys029
   registry-link: mrbayes
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -12926,6 +11732,7 @@
       processing and visualisation'
     url: https://doi.org/10.1016/J.NEUROIMAGE.2019.116137
   registry-link: MRtrix3
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - MRI
@@ -12952,6 +11759,7 @@
   - title: A cross-platform toolkit for mass spectrometry and proteomics
     url: https://doi.org/10.1038/nbt.2377
   registry-link: msconvert
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -12974,6 +11782,7 @@
   - title: 10.21105/joss.04494
     url: https://doi.org/10.21105/joss.04494
   registry-link: msmetaenhancer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -12999,6 +11808,7 @@
       proteomic experiments'
     url: http://www.ncbi.nlm.nih.gov/pubmed/24794931
   registry-link: msstats
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -13022,6 +11832,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13038,6 +11849,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: multiqc
@@ -13066,34 +11878,13 @@
       a single report'
     url: https://doi.org/10.1093/bioinformatics/btw354
   registry-link: multiqc
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
   - Bioinformatics
   - Sequence analysis
   - Genomics
-- biocontainers: multisnv
-  bunya: ''
-  description: multiSNV is a tool for calling somatic single-nucleotide variants (SNVs)
-    using NGS data from a normal and multiple tumour samples of the same patient.
-  galaxy: ''
-  homepage: https://bitbucket.org/joseph07/multisnv/src/master/
-  id: multisnv
-  license: GPL-3.0
-  name: multisnv
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'MultiSNV: A probabilistic approach for improving detection of somatic
-      point mutations from multiple related tumour samples'
-    url: https://doi.org/10.1093/nar/gkv135
-  registry-link: multisnv
-  resource-documentation: .nan
-  topics:
-  - Sequencing
-  - Genetic variation
-  - Oncology
 - biocontainers: mummer
   bunya: ''
   description: MUMmer is a modular system for the rapid whole genome alignment of
@@ -13136,37 +11927,12 @@
   - title: Fast algorithms for large-scale genome alignment and comparison
     url: https://doi.org/10.1093/nar/30.11.2478
   registry-link: mummer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Mapping
   - Sequencing
-- biocontainers: muscle
-  bunya: ''
-  description: This tool performs multiple sequence alignments of nucleotide or amino
-    acid sequences.
-  galaxy: ''
-  homepage: https://www.drive5.com/muscle/
-  id: muscle
-  license: Other
-  name: MUSCLE
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'MUSCLE: Multiple sequence alignment with high accuracy and high throughput'
-    url: https://doi.org/10.1093/nar/gkh340
-  - title: 10.7490/f1000research.1114334.1
-    url: https://doi.org/10.7490/f1000research.1114334.1
-  - title: 'MUSCLE: A multiple sequence alignment method with reduced time and space
-      complexity'
-    url: https://doi.org/10.1186/1471-2105-5-113
-  - title: 10.1101/2021.06.20.449169
-    url: https://doi.org/10.1101/2021.06.20.449169
-  registry-link: muscle
-  resource-documentation: .nan
-  topics:
-  - Sequence analysis
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -13192,6 +11958,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13211,6 +11978,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13231,6 +11999,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: Nanocompore
@@ -13271,6 +12040,7 @@
   - title: 10.1101/843136
     url: https://doi.org/10.1101/843136
   registry-link: Nanocompore
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Functional, regulatory and non-coding RNA
@@ -13294,6 +12064,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: nanoplot
@@ -13317,6 +12088,7 @@
   - title: 'NanoPack: Visualizing and processing long-read sequencing data'
     url: https://doi.org/10.1093/bioinformatics/bty149
   registry-link: nanoplot
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -13352,6 +12124,7 @@
   - title: Detecting DNA cytosine methylation using nanopore sequencing
     url: https://doi.org/10.1038/nmeth.4184
   registry-link: nanopolish
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -13372,6 +12145,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13391,6 +12165,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ncbi_datasets
@@ -13411,6 +12186,7 @@
   pawsey: ''
   publications: ''
   registry-link: ncbi_datasets
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Biological databases
@@ -13431,6 +12207,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13448,6 +12225,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: nccmp
@@ -13468,6 +12246,7 @@
   pawsey: ''
   publications: ''
   registry-link: nccmp
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13484,21 +12263,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://www.ncl.ucar.edu/index.shtml
-  id: ncl_ncarg
-  license: ''
-  name: NCL
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: nco
@@ -13518,6 +12283,7 @@
   pawsey: ''
   publications: ''
   registry-link: nco
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ncview
@@ -13534,6 +12300,7 @@
   pawsey: ''
   publications: ''
   registry-link: ncview
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: netcdf
@@ -13566,32 +12333,9 @@
   pawsey: ''
   publications: ''
   registry-link: netcdf
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: neurodebian
-  bunya: ''
-  description: NeuroDebian is a popular turnkey platform for Neuroscience, where software
-    is integrated, tested, and delivered conveniently and reliably so you could concentrate
-    on your research and not on "system maintenance". It provides a large collection
-    of popular neuroscience research software for the Debian operating system as well
-    as Ubuntu and other derivatives.
-  galaxy: ''
-  homepage: http://neuro.debian.net/
-  id: neurodebian
-  license: ''
-  name: neurodebian
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Open is not enough. Let''s take the next step: An integrated, community-driven
-      computing platform for neuroscience'
-    url: https://doi.org/10.3389/fninf.2012.00022
-  registry-link: neurodebian
-  resource-documentation: .nan
-  topics:
-  - Neurobiology
-  - Medical imaging
 - biocontainers: newick_utilities
   bunya: ''
   description: The Newick Utilities are a set of command-line tools for processing
@@ -13613,6 +12357,7 @@
   - title: 10.1093/bioinformatics/btq243
     url: https://doi.org/10.1093/bioinformatics/btq243
   registry-link: newick_utilities
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogeny
@@ -13635,30 +12380,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: nextdenovo
-  bunya: ''
-  description: NextDenovo is a string graph-based de novo assembler for long reads
-    (CLR, HiFi and ONT). It uses a "correct-then-assemble" strategy similar to canu
-    (no correction step for PacBio Hifi reads), but requires significantly less computing
-    resources and storages.
-  galaxy: ''
-  homepage: https://github.com/Nextomics/NextDenovo
-  id: nextdenovo
-  license: GPL-3.0
-  name: NextDenovo
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1101/2023.03.09.531669.
-    url: https://doi.org/10.1101/2023.03.09.531669.
-  registry-link: nextdenovo
-  resource-documentation: .nan
-  topics:
-  - Sequencing
-  - Sequence assembly
 - biocontainers: nextflow
   bunya:
   - 22.10.1
@@ -13679,6 +12403,7 @@
   - title: Nextflow enables reproducible computational workflows
     url: https://doi.org/10.1038/nbt.3820
   registry-link: nextflow
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Software engineering
@@ -13712,6 +12437,7 @@
   - title: 'NextPolish: A fast and efficient genome polishing tool for long-read assembly'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTZ891
   registry-link: NextPolish
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -13731,6 +12457,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13747,21 +12474,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://github.com/shenlab-sinai/ngsplot
-  id: ngsplot
-  license: ''
-  name: ngsplot
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ngsutils
@@ -13784,6 +12497,7 @@
       sequencing datasets'
     url: http://www.ncbi.nlm.nih.gov/pubmed/23314324
   registry-link: ngsutils
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -13804,6 +12518,7 @@
   pawsey: ''
   publications: ''
   registry-link: ninja
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogeny
@@ -13823,6 +12538,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -13839,41 +12555,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://nucleoatac.readthedocs.io/en/latest/
-  id: nucleoatac
-  license: ''
-  name: nucleoatac
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: nvbio
-  bunya: ''
-  description: NVBIO is a library of reusable components designed by NVIDIA Corporation
-    to accelerate bioinformatics applications using CUDA.
-  galaxy: ''
-  homepage: http://nvlabs.github.io/nvbio/index.html
-  id: nvbio
-  license: BSD-3-Clause
-  name: nvbio
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: nvbio
-  resource-documentation: .nan
-  topics:
-  - Bioinformatics
-  - Computer science
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -13890,34 +12574,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: oases
-  bunya: ''
-  description: De novo transcriptome assembler designed to produce transcripts from
-    short read sequencing technologies. It uploads a preliminary assembly produced
-    by Velvet, and clusters the contigs into small groups, called loci. It then exploits
-    the paired-end read and long read information, when available, to construct transcript
-    isoforms.
-  galaxy: ''
-  homepage: https://github.com/dzerbino/oases
-  id: oases
-  license: GPL-3.0
-  name: Oases
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Oases: Robust de novo RNA-seq assembly across the dynamic range of expression
-      levels'
-    url: https://doi.org/10.1093/bioinformatics/bts094
-  registry-link: oases
-  resource-documentation: .nan
-  topics:
-  - Transcriptomics
-  - Whole genome sequencing
-  - RNA-seq
-  - Sequence assembly
 - biocontainers: obitools
   bunya: ''
   description: Set of python programs developed to simplify the manipulation of sequence
@@ -13968,6 +12627,7 @@
   - title: 'obitools: A unix-inspired software package for DNA metabarcoding'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25959493
   registry-link: obitools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -13987,6 +12647,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: openms
@@ -14141,26 +12802,12 @@
   - title: 'OpenMS and TOPP: open source software for LC-MS data analysis.'
     url: https://doi.org/10.1007/978-1-60761-987-1_23
   registry-link: openms
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
   - Proteomics
   - Metabolomics
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://github.com/CSB5/OPERA-MS
-  id: opera-ms
-  license: ''
-  name: OPERA-MS
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -14175,6 +12822,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: OrthoFinder
@@ -14202,6 +12850,7 @@
   - title: 10.1101/466201
     url: https://doi.org/10.1101/466201
   registry-link: OrthoFinder
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -14209,61 +12858,6 @@
   - Bioinformatics
   - Comparative genomics
   - Sequence analysis
-- biocontainers: pepper-deepvariant
-  bunya: ''
-  description: PEPPER is a genome inference module based on recurrent neural networks
-    that enables long-read variant calling and nanopore assembly polishing in the
-    PEPPER-Margin-DeepVariant pipeline. This pipeline enables nanopore-based variant
-    calling with DeepVariant.
-  galaxy: ''
-  homepage: https://github.com/kishwarshafin/pepper
-  id: pepper+deepvariant
-  license: MIT
-  name: P.E.P.P.E.R. (+ deep variant)
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1101/2021.03.04.433952
-    url: https://doi.org/10.1101/2021.03.04.433952
-  registry-link: pepper-deepvariant
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-  - Mapping
-  - Sequencing
-- biocontainers: pacbioeda
-  bunya: ''
-  description: Python scripts for Exploratory Data Analysis of Pacific Biosciences
-    sequence data
-  galaxy: ''
-  homepage: https://github.com/TomSkelly/PacBioEDA
-  id: pacbioeda
-  license: GPL-3.0
-  name: PacBioEDA
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: pacbioeda
-  resource-documentation: .nan
-  topics:
-  - Sequencing
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://pairtools.readthedocs.io/en/latest/
-  id: pairtools
-  license: ''
-  name: pairtools
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -14296,6 +12890,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -14312,6 +12907,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pangolin
@@ -14337,6 +12933,7 @@
   - title: Predicting RNA splicing from DNA sequence using Pangolin
     url: https://doi.org/10.1186/S13059-022-02664-4
   registry-link: pangolin
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA splicing
@@ -14360,6 +12957,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: paraview
@@ -14389,6 +12987,7 @@
   pawsey: ''
   publications: ''
   registry-link: paraview
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data visualisation
@@ -14410,6 +13009,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: parsnp
@@ -14428,26 +13028,12 @@
   pawsey: ''
   publications: ''
   registry-link: parsnp
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA polymorphism
   - Phylogenetics
   - Structure analysis
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Paste1
-  license: ''
-  name: Paste1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: pathview
   bunya: ''
   description: Tool set for pathway based data integration and visualization that
@@ -14472,6 +13058,7 @@
       and visualization'
     url: https://doi.org/10.1093/bioinformatics/btt285
   registry-link: pathview
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Molecular interactions, pathways and networks
@@ -14500,6 +13087,7 @@
   - title: 10.1101/084715
     url: https://doi.org/10.1101/084715
   registry-link: pavian
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -14521,6 +13109,7 @@
       genomes'
     url: https://doi.org/10.1186/s12859-019-2597-8
   registry-link: pblat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-seq
@@ -14546,6 +13135,7 @@
       open portable platform
     url: https://doi.org/10.1038/S41598-021-98889-7
   registry-link: seqcode
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - ChIP-seq
@@ -14574,6 +13164,7 @@
   - title: 'PEAR: A fast and accurate Illumina Paired-End reAd mergeR'
     url: https://doi.org/10.1093/bioinformatics/btt593
   registry-link: pear
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -14593,6 +13184,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: peptideshaker
@@ -14631,6 +13223,7 @@
       the editor'
     url: https://doi.org/10.1038/nbt.3109
   registry-link: peptideshaker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -14653,6 +13246,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: percolator
@@ -14684,6 +13278,7 @@
       datasets
     url: http://www.ncbi.nlm.nih.gov/pubmed/17952086
   registry-link: percolator
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -14704,6 +13299,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pfamscan
@@ -14723,6 +13319,7 @@
   pawsey: ''
   publications: ''
   registry-link: pfamscan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -14746,6 +13343,7 @@
   - title: 'Pharokka: a fast scalable bacteriophage annotation tool'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTAC776
   registry-link: pharokka
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -14768,45 +13366,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: phosphomatics
-  bunya: ''
-  description: 'Interactive interrogation of substrate-kinase networks in global phosphoproteomics
-    datasets.
-
-
-    Phosphomatics helps you make sense of your high-throughput phosphoproteomics data.
-    Our aim is to help you connect the phosphorylation sties that you observe in your
-    mass spectrometry experiments to known upstream kinases. This provides a greater
-    understanding of the regulatory signaling networks operating in your systems.
-
-
-    You will be automatically redirected to your results once they''re ready.
-
-
-    This may take a minute or two depending on the size of your input data and our
-    server utilisation.'
-  galaxy: ''
-  homepage: https://phosphomatics.com
-  id: phosphomatics
-  license: ''
-  name: Phosphomatics
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Phosphomatics: interactive interrogation of substrate-kinase networks
-      in global phosphoproteomics datasets'
-    url: https://doi.org/10.1093/BIOINFORMATICS/BTAA916
-  registry-link: phosphomatics
-  resource-documentation: .nan
-  topics:
-  - Literature and language
-  - Protein modifications
-  - Proteomics experiment
-  - Small molecules
-  - Molecular interactions, pathways and networks
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -14821,6 +13383,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: phyloseq
@@ -14846,6 +13409,7 @@
       of Microbiome Census Data'
     url: https://doi.org/10.1371/journal.pone.0061217
   registry-link: phyloseq
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Microbiology
@@ -14877,6 +13441,7 @@
   - title: 10.1093/nar/gki352
     url: https://doi.org/10.1093/nar/gki352
   registry-link: phyml
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -15008,6 +13573,7 @@
   pawsey: ''
   publications: ''
   registry-link: picard_tools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -15053,6 +13619,7 @@
       marker gene sequences
     url: https://doi.org/10.1038/nbt.2676
   registry-link: picrust
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -15099,6 +13666,7 @@
   - title: 10.1038/s41587-020-0548-6
     url: https://doi.org/10.1038/s41587-020-0548-6
   registry-link: picrust2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
@@ -15121,6 +13689,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -15139,6 +13708,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pilon
@@ -15162,6 +13732,7 @@
       and genome assembly improvement'
     url: https://doi.org/10.1371/journal.pone.0112963
   registry-link: pilon
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Assembly
@@ -15192,6 +13763,7 @@
   - title: 'PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data'
     url: https://doi.org/10.1038/S41598-019-53155-9
   registry-link: PIPE-T
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - PCR experiment
@@ -15214,6 +13786,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: plink
@@ -15236,44 +13809,10 @@
       analyses'
     url: https://doi.org/10.1086/519795
   registry-link: plink
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - GWAS study
-- biocontainers: plink-seq
-  bunya: ''
-  description: Analytic tool development for variation data from large-scale resequencing
-    and genotyping projects, particularly whole-exome and whole-genome studies. It
-    is independent of (but designed to be complementary to) the existing PLINK package.
-  galaxy: ''
-  homepage: https://atgu.mgh.harvard.edu/plinkseq/
-  id: plinkseq
-  license: Not licensed
-  name: plinkseq
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: plink-seq
-  resource-documentation: .nan
-  topics:
-  - Population genetics
-  - Quantitative genetics
-  - Whole genome sequencing
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: plot_from_lda
-  license: ''
-  name: plot_from_lda
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -15297,6 +13836,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pnetcdf
@@ -15315,6 +13855,7 @@
   - title: 10.1109/SC.2003.10053
     url: https://doi.org/10.1109/SC.2003.10053
   registry-link: pnetcdf
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computer science
@@ -15334,6 +13875,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -15352,6 +13894,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: poretools
@@ -15410,6 +13953,7 @@
   - title: 'Poretools: A toolkit for analyzing nanopore sequence data'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25143291
   registry-link: poretools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -15431,6 +13975,7 @@
   - title: Orchestrating high-throughput genomic analysis with Bioconductor
     url: https://doi.org/10.1038/nmeth.3252
   registry-link: clstutils
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Taxonomy
@@ -15450,6 +13995,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pretextview
@@ -15468,24 +14014,10 @@
   pawsey: ''
   publications: ''
   registry-link: pretextview
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://github.com/GenABEL-Project/ProbABEL
-  id: probabel
-  license: ''
-  name: probabel
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: gmv
   bunya:
   - 2.6.3-gcccore-10.3.0
@@ -15510,6 +14042,7 @@
   - title: Genome majority vote improves gene predictions
     url: http://www.ncbi.nlm.nih.gov/pubmed/22131910
   registry-link: gmv
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -15538,6 +14071,7 @@
   - title: Orchestrating high-throughput genomic analysis with Bioconductor
     url: https://doi.org/10.1038/nmeth.3252
   registry-link: profia
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -15555,6 +14089,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: prokka
@@ -15578,34 +14113,12 @@
   - title: 10.1093/bioinformatics/btu153
     url: https://doi.org/10.1093/bioinformatics/btu153
   registry-link: prokka
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Model organisms
   - Virology
-- biocontainers: proovread
-  bunya: ''
-  description: Hybrid correction pipeline for SMRT reads, which can be flexibly adapted
-    on existing hardware and infrastructure from a laptop to a high performance computing
-    cluster.
-  galaxy: ''
-  homepage: http://www.bioinfo.biozentrum.uni-wuerzburg.de/groups/genomics/research/development_of_bioinformatical_tools/
-  id: proovread
-  license: ''
-  name: proovread
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Proovread: Large-scale high-accuracy PacBio correction through iterative
-      short read consensus'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/25015988
-  registry-link: proovread
-  resource-documentation: .nan
-  topics:
-  - DNA
-  - Sequencing
-  - Data quality management
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -15622,6 +14135,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -15638,6 +14152,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: purge_dups
@@ -15667,6 +14182,7 @@
   - title: 10.1101/729962
     url: https://doi.org/10.1101/729962
   registry-link: purge_dups
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -15685,6 +14201,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: pycoqc
@@ -15705,6 +14222,7 @@
   pawsey: ''
   publications: ''
   registry-link: pycoqc
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -15735,6 +14253,7 @@
   - title: 'pyGenomeTracks: reproducible plots for multivariate genomic datasets'
     url: https://doi.org/10.1093/BIOINFORMATICS/BTAA692
   registry-link: pygenometracks
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Model organisms
@@ -15766,29 +14285,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: pyrad
-  bunya: ''
-  description: Pipeline to assemble de novo RADseq loci with the aim of optimizing
-    coverage across phylogenetic datasets.
-  galaxy: ''
-  homepage: http://dereneaton.com/software/pyrad/
-  id: pyrad
-  license: ''
-  name: PyRAD
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'PyRAD: Assembly of de novo RADseq loci for phylogenetic analyses'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/24603985
-  registry-link: pyrad
-  resource-documentation: .nan
-  topics:
-  - Phylogenetics
-  - Sequence assembly
-  - Sequence analysis
 - biocontainers: pysam
   bunya:
   - 0.16.0.1-gcc-10.3.0
@@ -15806,6 +14305,7 @@
   - title: The Sequence Alignment/Map format and SAMtools
     url: https://doi.org/10.1093/bioinformatics/btp352
   registry-link: pysam
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -15829,33 +14329,11 @@
   pawsey: ''
   publications: ''
   registry-link: pytorch
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Machine learning
   - Computer science
-- biocontainers: qiime
-  bunya: ''
-  description: Open-source bioinformatics pipeline for performing microbiome analysis
-    from raw DNA sequencing data. The pipeline is designed to take users from raw
-    sequencing data generated on the Illumina or other platforms through publication
-    quality graphics and statistics. This includes demultiplexing and quality filtering,
-    OTU picking, taxonomic assignment, and phylogenetic reconstruction, and diversity
-    analyses and visualizations.
-  galaxy: ''
-  homepage: http://qiime.org/
-  id: qiime-modules
-  license: ''
-  name: QIIME
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: QIIME allows analysis of high-throughput community sequencing data
-    url: https://doi.org/10.1038/nmeth.f.303
-  registry-link: qiime
-  resource-documentation: .nan
-  topics:
-  - Biology
 - biocontainers: qiime2
   bunya:
   - '2022.8'
@@ -16453,6 +14931,7 @@
       using QIIME 2
     url: https://doi.org/10.1038/s41587-019-0209-9
   registry-link: qiime2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Microbial ecology
@@ -16475,6 +14954,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: qualimap
@@ -16506,6 +14986,7 @@
   - title: '22914218'
     url: http://www.ncbi.nlm.nih.gov/pubmed/22914218
   registry-link: qualimap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data quality management
@@ -16572,6 +15053,7 @@
   - title: 10.1101/733238
     url: https://doi.org/10.1101/733238
   registry-link: quasitools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Virology
@@ -16599,6 +15081,7 @@
   - title: 'QUAST: Quality assessment tool for genome assemblies'
     url: http://www.ncbi.nlm.nih.gov/pubmed/23422339
   registry-link: quast
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -16624,6 +15107,7 @@
   - title: 'Improve your Galaxy text life: The Query Tabular Tool'
     url: https://doi.org/10.12688/f1000research.16450.2
   registry-link: Query_Tabular
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Bioinformatics
@@ -16650,6 +15134,7 @@
   - title: 10.11120/msor.2001.01010023
     url: https://doi.org/10.11120/msor.2001.01010023
   registry-link: r
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mathematics
@@ -16688,6 +15173,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: Racon
@@ -16721,6 +15207,7 @@
       oxford nanopore technology'
     url: https://doi.org/10.3390/PLANTS8080270
   registry-link: Racon
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Whole genome sequencing
@@ -16750,43 +15237,10 @@
       annotation for metabolomics data'
     url: https://doi.org/10.1021/ac501530d
   registry-link: ramclustr
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
-- biocontainers: randfold
-  bunya: ''
-  description: Secondary structure calculation of non-coding RNA sequences.
-  galaxy: ''
-  homepage: http://bioinformatics.psb.ugent.be/software/details/Randfold
-  id: randfold
-  license: ''
-  name: randfold
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Evidence that microRNA precursors, unlike other non-coding RNAs, have lower
-      folding free energies than random sequences
-    url: https://doi.org/10.1093/bioinformatics/bth374
-  registry-link: randfold
-  resource-documentation: .nan
-  topics:
-  - Functional, regulatory and non-coding RNA
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: random_lines1
-  license: ''
-  name: random_lines1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ratatosk
   bunya:
   - 0.7.6.3--h43eeafb_2
@@ -16807,6 +15261,7 @@
   - title: 10.1101/2020.07.15.204925
     url: https://doi.org/10.1101/2020.07.15.204925
   registry-link: ratatosk
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA polymorphism
@@ -16828,26 +15283,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: rattle
-  bunya: ''
-  description: RATTLE is a tool for reference-free reconstruction and quantification
-    of transcriptomes from long-read sequencing.
-  galaxy: ''
-  homepage: https://github.com/comprna/RATTLE
-  id: rattle
-  license: GPL-3.0
-  name: RATTLE
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: rattle
-  resource-documentation: .nan
-  topics:
-  - Transcriptomics
-  - Sequencing
 - biocontainers: raven
   bunya: ''
   description: 'a de novo genome assembler for long reads.
@@ -16869,6 +15307,7 @@
   - title: 10.1101/2020.08.07.242461
     url: https://doi.org/10.1101/2020.08.07.242461
   registry-link: raven
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -16895,6 +15334,7 @@
       Spectrometer System Management'
     url: https://doi.org/10.1021/acs.jproteome.8b00721
   registry-link: rawtools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics experiment
@@ -16921,25 +15361,11 @@
   - title: 10.1093/bioinformatics/btl446
     url: https://doi.org/10.1093/bioinformatics/btl446
   registry-link: raxml
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
   - Sequence analysis
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://rclone.org/
-  id: rclone
-  license: ''
-  name: rclone
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: RDKit
   bunya: ''
   description: RDKit is an Open-Source Cheminformatics Software. Fast, Efficient Fragment-Based
@@ -16963,6 +15389,7 @@
   - title: 10.26434/CHEMRXIV.7791947.V2
     url: https://doi.org/10.26434/CHEMRXIV.7791947.V2
   registry-link: RDKit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Cheminformatics
@@ -16984,6 +15411,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: recon
@@ -17003,6 +15431,7 @@
   - title: 'RECON: A program for prediction of nucleosome formation potential'
     url: http://www.ncbi.nlm.nih.gov/pubmed/15215408
   registry-link: recon
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -17057,6 +15486,7 @@
   pawsey: ''
   publications: ''
   registry-link: recetox-aplcms
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -17080,29 +15510,12 @@
       sites using rule- based and statistical filters'
     url: http://www.ncbi.nlm.nih.gov/pubmed/26930599
   registry-link: red
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA
   - Sequencing
   - Data visualisation
-- biocontainers: refinem
-  bunya: ''
-  description: RefineM is a set of tools for improving population genomes. It provides
-    methods designed to improve the completeness of a genome along with methods for
-    identifying and removing contamination.
-  galaxy: ''
-  homepage: https://github.com/dparks1134/RefineM
-  id: refinem
-  license: GPL-3.0
-  name: RefineM
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: refinem
-  resource-documentation: .nan
-  topics:
-  - Population genomics
 - biocontainers: ''
   bunya:
   - 3.2.9
@@ -17117,44 +15530,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Remove beginning1
-  license: ''
-  name: Remove beginning1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: repdenovo
-  bunya: ''
-  description: A new method which assembles repeat sequences directly from raw shotgun
-    sequencing data.
-  galaxy: ''
-  homepage: https://github.com/Reedwarbler/REPdenovo
-  id: repdenovo
-  license: ''
-  name: REPdenovo
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'REPdenovo: Inferring De Novo repeat motifs from short sequence reads'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/26977803
-  registry-link: repdenovo
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-  - Sequencing
-  - Sequence composition, complexity and repeats
 - biocontainers: repeatmasker
   bunya:
   - 4.1.5--pl5321hdfd78af_0
@@ -17179,6 +15557,7 @@
   pawsey: ''
   publications: ''
   registry-link: repeatmasker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -17209,6 +15588,7 @@
   - title: 10.1101/856591
     url: https://doi.org/10.1101/856591
   registry-link: RepeatModeler2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Model organisms
@@ -17232,6 +15612,7 @@
   - title: 10.1093/bioinformatics/bti1018
     url: https://doi.org/10.1093/bioinformatics/bti1018
   registry-link: RepeatScout
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -17251,6 +15632,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -17269,6 +15651,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: rjags
@@ -17289,6 +15672,7 @@
   pawsey: ''
   publications: ''
   registry-link: rjags
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Statistics and probability
@@ -17315,6 +15699,7 @@
       annotation
     url: https://doi.org/10.1002/jms.3131
   registry-link: rmassbank
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metabolomics
@@ -17332,6 +15717,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: rmblast
@@ -17351,24 +15737,10 @@
   pawsey: ''
   publications: ''
   registry-link: rmblast
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: https://cran.r-project.org/web/packages/Rmpi/index.html
-  id: rmpi
-  license: ''
-  name: rmpi
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -17389,6 +15761,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: roary
@@ -17412,6 +15785,7 @@
   - title: 10.1093/bioinformatics/btv421
     url: https://doi.org/10.1093/bioinformatics/btv421
   registry-link: roary
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -17434,6 +15808,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: rsem
@@ -17457,6 +15832,7 @@
   - title: RNA-Seq gene expression estimation with read mapping uncertainty
     url: http://www.ncbi.nlm.nih.gov/pubmed/20022975
   registry-link: rsem
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -17560,6 +15936,7 @@
   - title: Measure transcript integrity using RNA-seq data
     url: https://doi.org/10.1186/s12859-016-0922-z
   registry-link: rseqc
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -17581,6 +15958,7 @@
   - title: 'RSTUDIO: A platform-independent IDE for R and sweave'
     url: https://doi.org/10.1002/jae.1278
   registry-link: rstudio
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mathematics
@@ -17601,6 +15979,7 @@
   pawsey: ''
   publications: ''
   registry-link: rtg_core
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -17624,34 +16003,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: saige
-  bunya: ''
-  description: 'SAIGE is an R package with Scalable and Accurate Implementation of
-    Generalized mixed model. It accounts for sample relatedness and is feasible for
-    genetic association tests in large cohorts and biobanks (N > 400,000).
-
-
-    SAIGE performs single-variant association tests for binary traits and quantitative
-    traits. For binary traits, SAIGE uses the saddlepoint approximation (SPA)(mhof,
-    J. P. , 1961; Kuonen, D. 1999; Dey, R. et.al 2017) to account for case-control
-    imbalance.
-
-
-    SAIGE-GENE (implemented in the SAIGE R package) performs gene- or region-based
-    association tests (Burde, SKAT, SKAT-O) for binary traits and quantitative traits.
-    Note: SAIGE-GENE accounts for case-control imbalance in gene-based tests (>= 0.35.8.5)'
-  galaxy: ''
-  homepage: https://github.com/weizhouUMICH/SAIGE
-  id: saige
-  license: ''
-  name: SAIGE
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: saige
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: sailfish
@@ -17675,6 +16027,7 @@
       using lightweight algorithms
     url: http://www.ncbi.nlm.nih.gov/pubmed/24752080
   registry-link: sailfish
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -17703,6 +16056,7 @@
   - title: Salmon provides fast and bias-aware quantification of transcript expression
     url: https://doi.org/10.1038/nmeth.4197
   registry-link: salmon
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -17725,6 +16079,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: SALSA
@@ -17752,6 +16107,7 @@
   - title: Integrating Hi-C links with assembly graphs for chromosome-scale assembly
     url: https://doi.org/10.1371/JOURNAL.PCBI.1007273
   registry-link: SALSA
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -17773,6 +16129,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -17791,6 +16148,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -17809,6 +16167,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: sambamba
@@ -17832,6 +16191,7 @@
   - title: 'Sambamba: Fast processing of NGS alignment formats'
     url: http://www.ncbi.nlm.nih.gov/pubmed/25697820
   registry-link: sambamba
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -17854,6 +16214,7 @@
   - title: 'SAMBLASTER: Fast duplicate marking and structural variant read extraction'
     url: http://www.ncbi.nlm.nih.gov/pubmed/24812344
   registry-link: samblaster
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -17875,6 +16236,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: samtools
@@ -17969,32 +16331,13 @@
       mapping and population genetical parameter estimation from sequencing data
     url: https://doi.org/10.1093/bioinformatics/btr509
   registry-link: samtools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
   - Sequence analysis
   - Sequencing
   - Rare diseases
-- biocontainers: sas-access
-  bunya: ''
-  description: SAS is an integrated system of software that enables you to do everything
-    from accessing data across multiple sources to performing sophisticated analyses
-    and delivering information across your organization. SAS foundation products are
-    available as individual software modules, and they serve as the foundation for
-    SAS solutions.
-  galaxy: ''
-  homepage: https://www.sas.com/en_us/software/foundation.html
-  id: sas
-  license: Proprietary
-  name: SAS
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: sas-access
-  resource-documentation: .nan
-  topics:
-  - Statistics and probability
 - biocontainers: scanpy
   bunya: ''
   description: Scalable toolkit for analyzing single-cell gene expression data. It
@@ -18118,34 +16461,12 @@
   - title: 'SCANPY: Large-scale single-cell gene expression data analysis'
     url: https://doi.org/10.1186/s13059-017-1382-0
   registry-link: scanpy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
   - Cell biology
   - Genetics
-- biocontainers: scarpa
-  bunya: ''
-  description: Scarpa is a stand-alone scaffolding tool for NGS data. It can be used
-    together with virtually any genome assembler and any NGS read mapper that supports
-    SAM format. Other features include support for multiple libraries and an option
-    to estimate insert size distributions from data.
-  galaxy: ''
-  homepage: http://compbio.cs.toronto.edu/hapsembler/scarpa.html
-  id: scarpa
-  license: GPL-3.0
-  name: Scarpa
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'SCARPA: Scaffolding reads with practical algorithms'
-    url: https://doi.org/10.1093/bioinformatics/bts716
-  registry-link: scarpa
-  resource-documentation: .nan
-  topics:
-  - Sequencing
-  - Sequence assembly
-  - DNA polymorphism
 - biocontainers: scater
   bunya: ''
   description: Pre-processing, quality control, normalization and visualization of
@@ -18183,6 +16504,7 @@
       of single-cell RNA-seq data in R'
     url: https://doi.org/10.1093/bioinformatics/btw777
   registry-link: scater
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-seq
@@ -18202,6 +16524,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: scikit-image
@@ -18241,6 +16564,7 @@
   - title: 10.7287/PEERJ.PREPRINTS.336V2
     url: https://doi.org/10.7287/PEERJ.PREPRINTS.336V2
   registry-link: scikit-image
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Imaging
@@ -18308,6 +16632,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18324,24 +16649,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: screed
-  bunya: ''
-  description: screed is a tool for short read sequence utils in Python.
-  galaxy: ''
-  homepage: https://pypi.org/project/screed/
-  id: screed
-  license: BSD-3-Clause
-  name: screed
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: screed
-  resource-documentation: .nan
-  topics:
-  - Sequencing
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -18358,21 +16668,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: secure_hash_message_digest
-  license: ''
-  name: secure_hash_message_digest
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18391,6 +16687,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: sepp
@@ -18412,6 +16709,7 @@
   - title: 10.1142/9789814366496_0024
     url: https://doi.org/10.1142/9789814366496_0024
   registry-link: sepp
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -18431,6 +16729,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18449,6 +16748,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: seqkit
@@ -18477,34 +16777,7 @@
   - title: 10.1371/journal.pone.0163962
     url: https://doi.org/10.1371/journal.pone.0163962
   registry-link: seqkit
-  resource-documentation: .nan
-  topics:
-  - Database management
-  - Sequence analysis
-- biocontainers: seqkit
-  bunya: ''
-  description: FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide
-    and protein sequences. Common manipulations of FASTA/Q file include converting,
-    searching, filtering, deduplication, splitting, shuffling, and sampling. Existing
-    tools only implement some of these manipulations, and not particularly efficiently,
-    and some are only available for certain operating systems. Furthermore, the complicated
-    installation process of required packages and running environments can render
-    these programs less user friendly. SeqKit demonstrates competitive performance
-    in execution time and memory usage compared to similar tools. The efficiency and
-    usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file
-    manipulations.
-  galaxy: ''
-  homepage: https://bioinf.shenwei.me/seqkit/
-  id: biocontainers-seqkit
-  license: ''
-  name: SeqKit (biocontainer)
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1371/journal.pone.0163962
-    url: https://doi.org/10.1371/journal.pone.0163962
-  registry-link: seqkit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Database management
@@ -18523,6 +16796,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: seqtk
@@ -18591,25 +16865,10 @@
       sequence data'
     url: https://doi.org/10.1186/s13104-017-2616-7
   registry-link: seqtk
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data management
-- biocontainers: seqtk-trinity
-  bunya: ''
-  description: seqtk-trinity is a toolkit for processing sequences in FASTA/Q formats.
-  galaxy: ''
-  homepage: https://github.com/trinityrnaseq/seqtk-trinity
-  id: seqtk-trinity
-  license: MIT
-  name: seqtk-trinity
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: seqtk-trinity
-  resource-documentation: .nan
-  topics:
-  - Sequencing
 - biocontainers: seurat
   bunya: ''
   description: Seurat is an R package designed for QC, analysis, and exploration of
@@ -18631,6 +16890,7 @@
   - title: Integrated analysis of multimodal single-cell data
     url: https://doi.org/10.1016/j.cell.2021.04.048
   registry-link: seurat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -18651,28 +16911,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: shapeit
-  bunya: ''
-  description: Fast and accurate method for estimation of haplotypes (aka phasing)
-    from genotype or sequencing data.
-  galaxy: ''
-  homepage: https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html
-  id: shapeit
-  license: Other
-  name: shapeit
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: A linear complexity phasing method for thousands of genomes
-    url: https://doi.org/10.1038/nmeth.1785
-  registry-link: shapeit
-  resource-documentation: .nan
-  topics:
-  - Genotype and phenotype
-  - Genotyping experiment
 - biocontainers: shasta
   bunya: ''
   description: De novo assembly from Oxford Nanopore reads.
@@ -18692,6 +16933,7 @@
       of eleven human genomes
     url: https://doi.org/10.1038/s41587-020-0503-6
   registry-link: shasta
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -18718,41 +16960,12 @@
   pawsey: ''
   publications: ''
   registry-link: shovill
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
   - Microbiology
   - Sequence assembly
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Show beginning1
-  license: ''
-  name: Show beginning1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: Show tail1
-  license: ''
-  name: Show tail1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: sicer
   bunya: ''
   description: A clustering approach for identification of enriched domains from histone
@@ -18774,29 +16987,11 @@
       modification ChIP-Seq data
     url: http://www.ncbi.nlm.nih.gov/pubmed/19505939
   registry-link: sicer
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - ChIP-seq
   - Epigenomics
-- biocontainers: sickle
-  bunya: ''
-  description: A  tool that uses sliding windows along with quality and length thresholds
-    to determine when quality is sufficiently low to trim the 3'-end of reads and
-    also determines when the quality is sufficiently high enough to trim the 5'-end
-    of reads.
-  galaxy: ''
-  homepage: https://github.com/najoshi/sickle
-  id: sickle
-  license: MIT
-  name: sickle
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: sickle
-  resource-documentation: .nan
-  topics:
-  - Data quality management
 - biocontainers: simtext
   bunya: ''
   description: 'A text mining framework for interactive analysis and visualization
@@ -18830,6 +17025,7 @@
   - title: 10.1101/2020.07.06.190629
     url: https://doi.org/10.1101/2020.07.06.190629
   registry-link: simtext
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Natural language processing
@@ -18850,6 +17046,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: SISTR
@@ -18874,36 +17071,14 @@
       of salmonella spp. Based on whole-genome short-read sequencing data
     url: https://doi.org/10.1128/AEM.02265-19
   registry-link: SISTR
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Whole genome sequencing
   - Immunoproteins and antigens
   - Sequence assembly
   - Zoology
-  - Public health and epidemiology
-- biocontainers: skewer
-  bunya: ''
-  description: Skewer implements a novel dynamic programming algorithm dedicated to
-    the task of adapter trimming and it is specially designed for processing illumina
-    paired-end sequences.
-  galaxy: ''
-  homepage: https://sourceforge.net/projects/skewer/
-  id: skewer
-  license: ''
-  name: skewer
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Skewer: A fast and accurate adapter trimmer for next-generation sequencing
-      paired-end reads'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/24925680
-  registry-link: skewer
-  resource-documentation: .nan
-  topics:
-  - RNA-Seq
-  - Sequence assembly
-  - Sequencing
+  - Public health and epidemiology
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -18918,6 +17093,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18934,6 +17110,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18952,6 +17129,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -18968,29 +17146,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: smrt_analysis
-  bunya: ''
-  description: Abioinformatics software suite for analyzing single molecule, real-time
-    DNA sequencing data from Pacific Biosciences.
-  galaxy: ''
-  homepage: http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/
-  id: smrtlink
-  license: ''
-  name: SMRT Link / Analysis
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: '22185597'
-    url: http://www.ncbi.nlm.nih.gov/pubmed/22185597
-  registry-link: smrt_analysis
-  resource-documentation: .nan
-  topics:
-  - DNA
-  - Sequencing
-  - Data visualisation
 - biocontainers: Smudgeplots
   bunya: ''
   description: 'Reference-free profiling of polyploid genomes | Inference of ploidy
@@ -19020,6 +17178,7 @@
   - title: 10.1101/747568
     url: https://doi.org/10.1101/747568
   registry-link: Smudgeplots
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -19046,6 +17205,7 @@
   - title: Snakemake-a scalable bioinformatics workflow engine
     url: http://www.ncbi.nlm.nih.gov/pubmed/22908215
   registry-link: snakemake
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Bioinformatics
@@ -19071,6 +17231,7 @@
   - title: 10.1186/1471-2105-5-59
     url: https://doi.org/10.1186/1471-2105-5-59
   registry-link: snap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -19104,6 +17265,7 @@
       pairing'
     url: https://doi.org/10.1093/ve/vez050
   registry-link: SNAPPy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Phylogenetics
@@ -19130,6 +17292,7 @@
       sequencing
     url: https://doi.org/10.1038/s41592-018-0001-7
   registry-link: sniffles
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA structural variation
@@ -19158,6 +17321,7 @@
   pawsey: ''
   publications: ''
   registry-link: snippy
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -19180,6 +17344,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -19199,6 +17364,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: snpeff
@@ -19235,6 +17401,7 @@
   - title: '22728672'
     url: http://www.ncbi.nlm.nih.gov/pubmed/22728672
   registry-link: snpeff
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA polymorphism
@@ -19256,6 +17423,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -19275,6 +17443,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: snpsift
@@ -19318,54 +17487,11 @@
       studies with a new program, SnpSift
     url: https://doi.org/10.3389/fgene.2012.00035
   registry-link: snpsift
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Data management
   - Data architecture, analysis and design
-- biocontainers: soap
-  bunya: ''
-  description: Short Oligonucleotide Analysis Package. Efficient gapped and ungapped
-    alignment of short oligonucleotides onto reference sequences and full solution
-    to next generation sequencing data analysis.
-  galaxy: ''
-  homepage: http://soap.genomics.org.cn/
-  id: soap
-  license: GPL-3.0
-  name: soap
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'SOAP: Short oligonucleotide alignment program'
-    url: https://doi.org/10.1093/bioinformatics/btn025
-  - title: 'SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner'
-    url: https://doi.org/10.1371/journal.pone.0065632
-  - title: 'SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner'
-    url: https://doi.org/10.1371/journal.pone.0065632
-  registry-link: soap
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-- biocontainers: soap3-gpu
-  bunya: ''
-  description: SOAP3 is a GPU-based software for aligning short reads to a reference
-    sequence.
-  galaxy: ''
-  homepage: https://i.cs.hku.hk/2bwt-tools/soap3/index.html
-  id: soap3-gpu
-  license: GPL-2.0
-  name: soap3-gpu
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'SOAP3: Ultra-fast GPU-based parallel alignment tool for short reads'
-    url: https://doi.org/10.1093/bioinformatics/bts061
-  registry-link: soap3-gpu
-  resource-documentation: .nan
-  topics:
-  - Sequence analysis
-  - Whole genome sequencing
 - biocontainers: soapdenovo2
   bunya: ''
   description: SOAPdenovo2 is a next generation sequencing reads de novo assembler.
@@ -19383,48 +17509,12 @@
       assembler'
     url: https://doi.org/10.1186/2047-217X-1-18
   registry-link: soapdenovo2
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
   - Sequencing
   - Metagenomics
-- biocontainers: soapsnp
-  bunya: ''
-  description: Accurate consensus sequence builder based on soap1 and SOAPaligner/soap2's
-    alignment output. It calculates a quality score for each consensus base, which
-    can be used for any latter process to call SNPs.
-  galaxy: ''
-  homepage: http://soap.genomics.org.cn/soapsnp.html
-  id: soapsnp
-  license: ''
-  name: SOAPsnp
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: SNP detection for massively parallel whole-genome resequencing
-    url: http://www.ncbi.nlm.nih.gov/pubmed/19420381
-  registry-link: soapsnp
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-  - DNA polymorphism
-  - Human biology
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: sort1
-  license: ''
-  name: sort1
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: sortmerna
   bunya:
   - 4.3.6--h9ee0642_0
@@ -19445,6 +17535,7 @@
       data'
     url: https://doi.org/10.1093/bioinformatics/bts611
   registry-link: sortmerna
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metatranscriptomics
@@ -19463,6 +17554,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: spades
@@ -19518,6 +17610,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: spades
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -19535,6 +17628,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: srf
@@ -19555,6 +17649,7 @@
       using Fourier transformation'
     url: https://doi.org/10.1093/bioinformatics/bth103
   registry-link: srf
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computational biology
@@ -19574,6 +17669,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -19590,6 +17686,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -19608,33 +17705,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: squeezemeta
-  bunya: ''
-  description: SqueezeMeta is a fully automated metagenomics pipeline, from reads
-    to bins.
-  galaxy: ''
-  homepage: https://github.com/jtamames/SqueezeMeta
-  id: squeezemeta
-  license: GPL-3.0
-  name: SqueezeMeta
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: SqueezeMeta, a highly portable, fully automatic metagenomic analysis pipeline
-    url: https://doi.org/10.3389/fmicb.2018.03349
-  - title: 'SQMtools: Automated processing and visual analysis of ''omics data with
-      R and anvi''o'
-    url: https://doi.org/10.1186/s12859-020-03703-2
-  registry-link: squeezemeta
-  resource-documentation: .nan
-  topics:
-  - Metagenomics
-  - Metatranscriptomics
-  - RNA-Seq
-  - Microbial ecology
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -19651,6 +17724,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: sra-tools
@@ -19661,14 +17735,14 @@
     for using data in the INSDC Sequence Read Archives.
   galaxy:
   - description: 'Download and Extract Reads in BAM: format from NCBI SRA'
-    title: Download and Extract Reads in BAM 3.0.10+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Fsam_dump%2F3.0.10%2Bgalaxy0
+    title: Download and Extract Reads in BAM 3.1.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Fsam_dump%2F3.1.0%2Bgalaxy0
   - description: 'Faster Download and Extract Reads in FASTQ: format from NCBI SRA'
-    title: Faster Download and Extract Reads in FASTQ 3.0.10+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Ffasterq_dump%2F3.0.10%2Bgalaxy0
+    title: Faster Download and Extract Reads in FASTQ 3.1.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Ffasterq_dump%2F3.1.0%2Bgalaxy0
   - description: 'Download and Extract Reads in FASTQ: format from NCBI SRA'
-    title: Download and Extract Reads in FASTQ 3.0.10+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Ffastq_dump%2F3.0.10%2Bgalaxy0
+    title: Download and Extract Reads in FASTQ 3.1.0+galaxy0
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fsra_tools%2Ffastq_dump%2F3.1.0%2Bgalaxy0
   homepage: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc
   id: sra-tools
   license: ''
@@ -19681,6 +17755,7 @@
   - title: Database resources of the National Center for Biotechnology Information.
     url: http://www.ncbi.nlm.nih.gov/pubmed/16381840
   registry-link: sra-tools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
@@ -19700,6 +17775,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ssw
@@ -19719,6 +17795,7 @@
   - title: 'SSW library: An SIMD Smith-Waterman C/C++ library for use in genomic applications'
     url: http://www.ncbi.nlm.nih.gov/pubmed/24324759
   registry-link: ssw
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sample collections
@@ -19826,6 +17903,7 @@
   - title: 'Stacks: An analysis tool set for population genomics'
     url: https://doi.org/10.1111/mec.12354
   registry-link: stacks
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
@@ -19857,6 +17935,7 @@
   - title: Lacking alignments? The next-generation sequencing mapper segemehl revisited
     url: https://doi.org/10.1093/bioinformatics/btu146
   registry-link: star
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -19878,6 +17957,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: star-fusion
@@ -19897,6 +17977,7 @@
   pawsey: ''
   publications: ''
   registry-link: star-fusion
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene structure
@@ -19927,40 +18008,11 @@
       reads
     url: https://doi.org/10.1038/nbt.3122
   registry-link: stringtie
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
   - RNA-seq
-- biocontainers: structure
-  bunya: ''
-  description: The program structureis a free software package for using multi-locus
-    genotype data to investigate population structure. Its uses include inferring
-    the presence of distinct populations, assigning individuals to populations, studying
-    hybrid zones, identifying migrants and admixed individuals, and estimating population
-    allele frequencies in situations where many individuals are migrants or admixed.
-  galaxy: ''
-  homepage: https://web.stanford.edu/group/pritchardlab/structure.html
-  id: structure
-  license: Not licensed
-  name: structure
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1093/genetics/155.2.945
-    url: https://doi.org/10.1093/genetics/155.2.945
-  - title: 10.1093/genetics/164.4.1567
-    url: https://doi.org/10.1093/genetics/164.4.1567
-  - title: 10.1111/j.1471-8286.2007.01758.x
-    url: https://doi.org/10.1111/j.1471-8286.2007.01758.x
-  - title: 10.1111/j.1755-0998.2009.02591.x
-    url: https://doi.org/10.1111/j.1755-0998.2009.02591.x
-  - title: 10.1111/j.1365-294X.2005.02553.x
-    url: https://doi.org/10.1111/j.1365-294X.2005.02553.x
-  registry-link: structure
-  resource-documentation: .nan
-  topics:
-  - Population genetics
 - biocontainers: subread
   bunya: ''
   description: Subread is a general-purpose read aligner which can be used to map
@@ -19985,6 +18037,7 @@
   - title: Simulation-based comprehensive benchmarking of RNA-seq aligners
     url: https://doi.org/10.1038/nmeth.4106
   registry-link: subread
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -20007,6 +18060,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: super-focus
@@ -20027,37 +18081,12 @@
       data'
     url: http://www.ncbi.nlm.nih.gov/pubmed/26454280
   registry-link: super-focus
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
   - Metagenomics
   - Sequence analysis
-- biocontainers: supernova
-  bunya: ''
-  description: Supernova is a software package for de novo assembly from Chromium
-    Linked-Reads that are made from a single whole-genome library from an individual
-    DNA source. A key feature of Supernova is that it creates diploid assemblies,
-    thus separately representing maternal and paternal chromosomes over very long
-    distances. Almost all other methods instead merge homologous chromosomes into
-    single incorrect 'consensus' sequences. Supernova is the only practical method
-    for creating diploid assemblies of large genomes.
-  galaxy: ''
-  homepage: https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome
-  id: supernova
-  license: Proprietary
-  name: Supernova
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Direct determination of diploid genome sequences
-    url: https://doi.org/10.1101/gr.214874.116
-  registry-link: supernova
-  resource-documentation: .nan
-  topics:
-  - Sequencing
-  - Whole genome sequencing
-  - Sequence assembly
 - biocontainers: suppa
   bunya:
   - 2.3--py_2
@@ -20077,6 +18106,7 @@
       splicing profiles
     url: https://doi.org/10.1261/rna.051557.115
   registry-link: suppa
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
@@ -20107,68 +18137,13 @@
   - title: 10.1101/2020.10.27.356907
     url: https://doi.org/10.1101/2020.10.27.356907
   registry-link: svim-asm
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
   - Genotype and phenotype
   - Sequencing
   - DNA polymorphism
-- biocontainers: SVJedi
-  bunya: ''
-  description: 'Genotyping structural variations with long reads.
-
-
-    SVJedi : Genotyping structural variations with long read data.
-
-
-    SVJedi is a structural variation (SV) genotyper for long read data. Based on a
-    representation of the different alleles, it estimates the genotype of each variant
-    in a given individual sample based on allele-specific alignment counts. SVJedi
-    takes as input a variant file (VCF), a reference genome (fasta) and a long read
-    file (fasta/fastq) and outputs the initial variant file with an additional column
-    containing genotyping information (VCF)'
-  galaxy: ''
-  homepage: https://github.com/llecompte/SVJedi.git
-  id: svjedi
-  license: AGPL-3.0
-  name: svjedi
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1101/849208
-    url: https://doi.org/10.1101/849208
-  registry-link: SVJedi
-  resource-documentation: .nan
-  topics:
-  - Genotype and phenotype
-  - DNA structural variation
-  - Sequencing
-  - Mapping
-  - Sequence assembly
-- biocontainers: svtyper
-  bunya: ''
-  description: SVTyper performs breakpoint genotyping of structural variants (SVs)
-    using whole genome sequencing data.
-  galaxy: ''
-  homepage: https://github.com/hall-lab/svtyper
-  id: svtyper
-  license: MIT
-  name: svtyper
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'SpeedSeq: Ultra-fast personal genome analysis and interpretation'
-    url: https://doi.org/10.1038/nmeth.3505
-  registry-link: svtyper
-  resource-documentation: .nan
-  topics:
-  - Genetic variation
-  - Genomics
-  - Genotype and phenotype
-  - Whole genome sequencing
-  - Oncology
 - biocontainers: SyRI
   bunya: ''
   description: 'SyRI is tool for finding genomic rearrangements and local sequence
@@ -20199,6 +18174,7 @@
       whole-genome assemblies'
     url: https://doi.org/10.1186/S13059-019-1911-0
   registry-link: SyRI
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA polymorphism
@@ -20222,6 +18198,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20240,6 +18217,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20258,30 +18236,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: tagdust
-  bunya: ''
-  description: TagDust, a program identifying artifactual sequences in large sequencing
-    runs. Given a user-defined cutoff for the false discovery rate (FDR), TagDust
-    identifies all reads explainable by combinations and partial matches to known
-    sequences used during library preparation.
-  galaxy: ''
-  homepage: http://genome.gsc.riken.jp/osc/english/software/
-  id: tagdust
-  license: GPL-3.0
-  name: tagdust
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: TagDust - A program to eliminate artifacts from next generation sequencing
-      data
-    url: http://www.ncbi.nlm.nih.gov/pubmed/19737799
-  registry-link: tagdust
-  resource-documentation: .nan
-  topics:
-  - Data quality management
 - biocontainers: targetfinder.org
   bunya: ''
   description: Targetfinder.org provides a web based resource that allows users to
@@ -20302,6 +18259,7 @@
       factor target genes'
     url: http://www.ncbi.nlm.nih.gov/pubmed/20460454
   registry-link: targetfinder.org
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
@@ -20309,51 +18267,6 @@
   - Gene transcripts
   - Small molecules
   - Gene regulation
-- biocontainers: tassel
-  bunya: ''
-  description: Software package to evaluate traits associations, evolutionary patterns,
-    and linkage disequilibrium.
-  galaxy: ''
-  homepage: http://www.maizegenetics.net/tassel
-  id: tassel
-  license: LGPL-2.1
-  name: tassel
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'TASSEL: Software for association mapping of complex traits in diverse
-      samples'
-    url: https://doi.org/10.1093/bioinformatics/btm308
-  registry-link: tassel
-  resource-documentation: .nan
-  topics:
-  - GWAS study
-  - Mapping
-- biocontainers: tax4fun2
-  bunya: ''
-  description: Tax4Fun2 is a prediction of habitat-specific functional profiles and
-    functional redundancy based on 16S rRNA gene sequences.
-  galaxy: ''
-  homepage: https://github.com/bwemheu/Tax4Fun2
-  id: tax4fun2
-  license: GPL-3.0
-  name: Tax4Fun2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 'Tax4Fun2: Prediction of habitat-specific functional profiles and functional
-      redundancy based on 16S rRNA gene sequences'
-    url: https://doi.org/10.1186/S40793-020-00358-7
-  registry-link: tax4fun2
-  resource-documentation: .nan
-  topics:
-  - Microbial ecology
-  - Metagenomics
-  - Functional, regulatory and non-coding RNA
-  - Sequence sites, features and motifs
-  - Biodiversity
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -20370,6 +18283,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20387,6 +18301,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20406,6 +18321,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20425,6 +18341,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: tensorflow
@@ -20462,6 +18379,7 @@
       neuropsychological test data
     url: https://doi.org/10.1186/S12911-019-0974-X
   registry-link: tensorflow
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Machine learning
@@ -20489,6 +18407,7 @@
   - title: 10.1101/800177
     url: https://doi.org/10.1101/800177
   registry-link: TEsorter
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Protein folds and structural domains
@@ -20512,6 +18431,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20519,62 +18439,62 @@
   description: ''
   galaxy:
   - description: 'Join: two files'
-    title: Join 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_easyjoin_tool%2F9.3%2Bgalaxy0
+    title: Join 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_easyjoin_tool%2F9.3%2Bgalaxy1
   - description: 'Sort a row: according to their columns'
-    title: Sort a row 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sort_rows%2F9.3%2Bgalaxy0
+    title: Sort a row 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sort_rows%2F9.3%2Bgalaxy1
   - description: 'Text transformation: with sed'
-    title: Text transformation 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sed_tool%2F9.3%2Bgalaxy0
+    title: Text transformation 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sed_tool%2F9.3%2Bgalaxy1
   - description: 'Select first: lines from a dataset (head)'
-    title: Select first 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_head_tool%2F9.3%2Bgalaxy0
+    title: Select first 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_head_tool%2F9.3%2Bgalaxy1
   - description: 'Create text file: with recurring lines'
-    title: Create text file 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_text_file_with_recurring_lines%2F9.3%2Bgalaxy0
+    title: Create text file 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_text_file_with_recurring_lines%2F9.3%2Bgalaxy1
   - description: 'Concatenate datasets: tail-to-head (cat)'
-    title: Concatenate datasets 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_cat%2F9.3%2Bgalaxy0
+    title: Concatenate datasets 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_cat%2F9.3%2Bgalaxy1
   - description: 'tac: reverse a file (reverse cat)'
-    title: tac 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_tac%2F9.3%2Bgalaxy0
+    title: tac 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_tac%2F9.3%2Bgalaxy1
   - description: 'Unfold: columns from a table'
-    title: Unfold 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_unfold_column_tool%2F9.3%2Bgalaxy0
+    title: Unfold 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_unfold_column_tool%2F9.3%2Bgalaxy1
   - description: 'Search in textfiles: (grep)'
-    title: Search in textfiles 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_grep_tool%2F9.3%2Bgalaxy0
+    title: Search in textfiles 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_grep_tool%2F9.3%2Bgalaxy1
   - description: 'Advanced Cut: columns from a table (cut)'
-    title: Advanced Cut 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_cut_tool%2F9.3%2Bgalaxy0
+    title: Advanced Cut 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_cut_tool%2F9.3%2Bgalaxy1
   - description: 'Sort: data in ascending or descending order'
-    title: Sort 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sort_header_tool%2F9.3%2Bgalaxy0
+    title: Sort 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sort_header_tool%2F9.3%2Bgalaxy1
   - description: 'Replace Text: in entire line'
-    title: Replace Text 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_replace_in_line%2F9.3%2Bgalaxy0
+    title: Replace Text 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_replace_in_line%2F9.3%2Bgalaxy1
   - description: 'Replace Text: in a specific column'
-    title: Replace Text 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_replace_in_column%2F9.3%2Bgalaxy0
+    title: Replace Text 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_replace_in_column%2F9.3%2Bgalaxy1
   - description: 'Replace: parts of text'
-    title: Replace 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_find_and_replace%2F9.3%2Bgalaxy0
+    title: Replace 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_find_and_replace%2F9.3%2Bgalaxy1
   - description: 'Multi-Join: (combine multiple files)'
-    title: Multi-Join 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_multijoin_tool%2F9.3%2Bgalaxy0
+    title: Multi-Join 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_multijoin_tool%2F9.3%2Bgalaxy1
   - description: 'Select last: lines from a dataset (tail)'
-    title: Select last 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_tail_tool%2F9.3%2Bgalaxy0
+    title: Select last 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_tail_tool%2F9.3%2Bgalaxy1
   - description: 'Unique: occurrences of each record'
-    title: Unique 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sorted_uniq%2F9.3%2Bgalaxy0
+    title: Unique 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_sorted_uniq%2F9.3%2Bgalaxy1
   - description: 'Unique lines: assuming sorted input file'
-    title: Unique lines 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_uniq_tool%2F9.3%2Bgalaxy0
+    title: Unique lines 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_uniq_tool%2F9.3%2Bgalaxy1
   - description: 'Text reformatting: with awk'
-    title: Text reformatting 9.3+galaxy0
-    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_awk_tool%2F9.3%2Bgalaxy0
+    title: Text reformatting 9.3+galaxy1
+    url: https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fbgruening%2Ftext_processing%2Ftp_awk_tool%2F9.3%2Bgalaxy1
   homepage: ''
   id: text_processing
   license: ''
@@ -20584,6 +18504,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ThermoRawFileParser
@@ -20605,6 +18526,7 @@
   - title: 10.1101/622852
     url: https://doi.org/10.1101/622852
   registry-link: ThermoRawFileParser
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -20636,6 +18558,7 @@
   - title: 10.7490/f1000research.1114334.1
     url: https://doi.org/10.7490/f1000research.1114334.1
   registry-link: tophat
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -20656,24 +18579,10 @@
   pawsey: ''
   publications: ''
   registry-link: totalview
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Computer science
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: trams
-  license: ''
-  name: trams
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: TransDecoder
   bunya:
   - 5.5.0--pl5321hdfd78af_5
@@ -20694,6 +18603,7 @@
   pawsey: ''
   publications: ''
   registry-link: TransDecoder
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -20734,26 +18644,12 @@
   - title: TRANSIT - A Software Tool for Himar1 TnSeq Analysis
     url: http://www.ncbi.nlm.nih.gov/pubmed/26447887
   registry-link: transit
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA
   - Sequencing
   - Mobile genetic elements
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: translate_bed
-  license: ''
-  name: translate_bed
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: TPP_SPC
   bunya: ''
   description: Institute for Systems Biology "Trans-Proteomic Pipeline"
@@ -20796,6 +18692,7 @@
   - title: A guided tour of the Trans-Proteomic Pipeline
     url: http://www.ncbi.nlm.nih.gov/pubmed/20101611
   registry-link: TPP_SPC
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -20814,6 +18711,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -20830,6 +18728,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: trf
@@ -20854,6 +18753,7 @@
   - title: 'Tandem repeats finder: A program to analyze DNA sequences'
     url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC148217
   registry-link: trf
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -20876,6 +18776,7 @@
       analyses'
     url: http://www.ncbi.nlm.nih.gov/pubmed/19505945
   registry-link: trimal
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -20899,24 +18800,10 @@
   pawsey: ''
   publications: ''
   registry-link: trim_galore
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: trimmer
-  license: ''
-  name: trimmer
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: trimmomatic
   bunya:
   - 0.39-java-11
@@ -20939,6 +18826,7 @@
       transcriptomics'
     url: https://doi.org/10.1093/nar/gks540
   registry-link: trimmomatic
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -21011,6 +18899,7 @@
       platform for reference generation and analysis
     url: https://doi.org/10.1038/nprot.2013.084
   registry-link: trinity
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Transcriptomics
@@ -21038,6 +18927,7 @@
       Limb Regeneration Factors
     url: https://doi.org/10.1016/j.celrep.2016.12.063
   registry-link: trinotate
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Gene expression
@@ -21063,6 +18953,7 @@
   - title: 10.1093/nar/25.5.955
     url: https://doi.org/10.1093/nar/25.5.955
   registry-link: trnascan-se
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA
@@ -21102,6 +18993,7 @@
   - title: 'Trycycler: consensus long-read assemblies for bacterial genomes'
     url: https://doi.org/10.1186/s13059-021-02483-z
   registry-link: trycycler
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -21139,6 +19031,7 @@
   pawsey: ''
   publications: ''
   registry-link: UCSC_Genome_Browser_Utilities
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence analysis
@@ -21158,6 +19051,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -21176,6 +19070,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: umi-tools
@@ -21209,6 +19104,7 @@
       to improve quantification accuracy'
     url: https://doi.org/10.1101/gr.209601.116
   registry-link: umi-tools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - NGS
@@ -21234,6 +19130,7 @@
       reads'
     url: https://doi.org/10.1371/JOURNAL.PCBI.1005595
   registry-link: unicycler
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Microbiology
@@ -21261,6 +19158,7 @@
       Tool'
     url: https://doi.org/10.1021/ACS.JPROTEOME.0C00855
   registry-link: unipept
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -21283,6 +19181,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -21301,6 +19200,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -21322,6 +19222,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: vep
@@ -21343,6 +19244,7 @@
   - title: The Ensembl Variant Effect Predictor
     url: https://doi.org/10.1186/s13059-016-0974-4
   registry-link: vep
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -21381,26 +19283,11 @@
       by exome sequencing'
     url: https://doi.org/10.1101/gr.129684.111
   registry-link: varscan
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
   - DNA polymorphism
-- biocontainers: vawk
-  bunya: ''
-  description: vawk is an awk-like VCF parser.
-  galaxy: ''
-  homepage: https://github.com/cc2qe/vawk
-  id: vawk
-  license: MIT
-  name: vawk
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: vawk
-  resource-documentation: .nan
-  topics:
-  - Sequencing
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -21417,6 +19304,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -21435,6 +19323,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: vcflib
@@ -21533,6 +19422,7 @@
   - title: 10.1101/023754
     url: https://doi.org/10.1101/023754
   registry-link: vcflib
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genomics
@@ -21563,6 +19453,7 @@
   - title: The variant call format and VCFtools
     url: https://doi.org/10.1093/bioinformatics/btr330
   registry-link: vcftools
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Genetic variation
@@ -21593,6 +19484,7 @@
   - title: 10.1101/gr.074492.107
     url: https://doi.org/10.1101/gr.074492.107
   registry-link: velvet
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -21610,29 +19502,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: viennarna
-  bunya: ''
-  description: The ViennaRNA Package consists of a C code library and several stand-alone
-    programs for the prediction and comparison of RNA secondary structures.
-  galaxy: ''
-  homepage: https://www.tbi.univie.ac.at/RNA/
-  id: viennarna
-  license: Freeware
-  name: ViennaRNA
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: ViennaRNA Package 2.0
-    url: https://doi.org/10.1186/1748-7188-6-26
-  registry-link: viennarna
-  resource-documentation: .nan
-  topics:
-  - Structure prediction
-  - Nucleic acid structure analysis
-  - RNA
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -21647,6 +19519,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -21665,6 +19538,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: vsearch
@@ -21710,25 +19584,11 @@
   - title: 10.7717/peerj.2584
     url: https://doi.org/10.7717/peerj.2584
   registry-link: vsearch
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Metagenomics
   - Sequence analysis
-- biocontainers: ''
-  bunya: ''
-  description: ''
-  galaxy: ''
-  homepage: ''
-  id: wc_gnu
-  license: ''
-  name: wc_gnu
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications: ''
-  registry-link: ''
-  resource-documentation: .nan
-  topics: ''
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -21745,6 +19605,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: whatshap
@@ -21768,6 +19629,7 @@
   - title: 10.1101/037101
     url: https://doi.org/10.1101/037101
   registry-link: whatshap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - DNA polymorphism
@@ -21788,6 +19650,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: windowmasker
@@ -21811,6 +19674,7 @@
   pawsey: ''
   publications: ''
   registry-link: windowmasker
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequencing
@@ -21835,31 +19699,10 @@
   - title: Weighted minimizer sampling improves long read mapping
     url: https://doi.org/10.1093/bioinformatics/btaa435
   registry-link: winnowmap
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Mapping
-- biocontainers: wise
-  bunya: ''
-  description: Compare a protein sequences or protein HMMs to a genomic DNA sequence,
-    allowing for introns and frameshifting errors.
-  galaxy: ''
-  homepage: http://www.ebi.ac.uk/Tools/Wise2/
-  id: wise
-  license: ''
-  name: wise
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: Using GeneWise in the Drosophila annotation experiment
-    url: https://doi.org/10.1101/gr.10.4.547
-  - title: GeneWise and Genomewise
-    url: http://www.ncbi.nlm.nih.gov/pubmed/15123596
-  registry-link: wise
-  resource-documentation: .nan
-  topics:
-  - HMMs
-  - DNA
 - biocontainers: workflow4metabolomics
   bunya: ''
   description: First fully open-source and collaborative online platform for computational
@@ -21947,6 +19790,7 @@
       \ 3.0 Galaxy online infrastructure for metabolomics"
     url: https://doi.org/10.1016/j.biocel.2017.07.002
   registry-link: workflow4metabolomics
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Systems biology
@@ -21968,32 +19812,9 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
-- biocontainers: wtdbg2
-  bunya: ''
-  description: Wtdbg2 is a de novo sequence assembler for long noisy reads produced
-    by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without
-    error correction and then builds the consensus from intermediate assembly output.
-    Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed
-    tens of times faster than CANU and FALCON while producing contigs of comparable
-    base accuracy.
-  galaxy: ''
-  homepage: https://github.com/ruanjue/wtdbg2
-  id: wtdbg2
-  license: GPL-3.0
-  name: WTDBG2
-  nci-gadi: ''
-  nci-if89: ''
-  pawsey: ''
-  publications:
-  - title: 10.1038/S41592-019-0669-3
-    url: https://doi.org/10.1038/S41592-019-0669-3
-  registry-link: wtdbg2
-  resource-documentation: .nan
-  topics:
-  - Sequence assembly
-  - Sequencing
 - biocontainers: ''
   bunya: ''
   description: ''
@@ -22014,6 +19835,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: xcms
@@ -22063,6 +19885,7 @@
       metabolomics data
     url: https://doi.org/10.1093/bioinformatics/btq441
   registry-link: xcms
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Biological imaging
@@ -22081,6 +19904,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: Documentation link
   resource-documentation: https://github.com/AustralianBioCommons/xml4ena
   topics: ''
 - biocontainers: xpore
@@ -22104,6 +19928,7 @@
   - title: 10.1101/2020.06.18.160010
     url: https://doi.org/10.1101/2020.06.18.160010
   registry-link: xpore
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - RNA-Seq
@@ -22132,6 +19957,7 @@
   - title: 'TANDEM: Matching proteins with tandem mass spectra'
     url: https://doi.org/10.1093/bioinformatics/bth092
   registry-link: xtandem
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Proteomics
@@ -22152,6 +19978,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: yahs
@@ -22175,6 +20002,7 @@
   - title: 10.1101/2022.06.09.495093
     url: https://doi.org/10.1101/2022.06.09.495093
   registry-link: yahs
+  resource-description: .nan
   resource-documentation: .nan
   topics:
   - Sequence assembly
@@ -22195,6 +20023,7 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''
 - biocontainers: ''
@@ -22213,5 +20042,6 @@
   pawsey: ''
   publications: ''
   registry-link: ''
+  resource-description: .nan
   resource-documentation: .nan
   topics: ''