values.yaml

# Default values for hatchery.
# This is a YAML-formatted file.
# Declare variables to be passed into your templates.

# Global configuration
global:
  # -- (map) AWS configuration
  aws:
    # -- (bool) Set to true if deploying to AWS. Controls ingress annotations.
    enabled: false
    # -- (string) Credentials for AWS stuff.
    awsAccessKeyId:
    # -- (string) Credentials for AWS stuff.
    awsSecretAccessKey:
  # -- (bool) Whether the deployment is for development purposes.
  dev: true

  postgres:
    # -- (bool) Whether the database should be created.
    dbCreate: true
    # -- (string) Name of external secret. Disabled if empty
    externalSecret: ""
    # -- (map) Master credentials to postgres. This is going to be the default postgres server being used for each service, unless each service specifies their own postgres
    master:
      # -- (string) hostname of postgres server
      host:
      # -- (string) username of superuser in postgres. This is used to create or restore databases
      username: postgres
      # -- (string) password for superuser in postgres. This is used to create or restore databases
      password:
      # -- (string) Port for Postgres.
      port: "5432"
  # -- (string) Environment name. This should be the same as vpcname if you're doing an AWS deployment. Currently this is being used to share ALB's if you have multiple namespaces. Might be used other places too.
  environment: default
  # -- (string) Hostname for the deployment.
  hostname: localhost
  # -- (string) ARN of the reverse proxy certificate.
  revproxyArn: arn:aws:acm:us-east-1:123456:certificate
  # -- (string) URL of the data dictionary.
  dictionaryUrl: https://s3.amazonaws.com/dictionary-artifacts/datadictionary/develop/schema.json
  # -- (string) Portal application name.
  portalApp: gitops
  # -- (string) S3 bucket name for Kubernetes manifest files.
  kubeBucket: kube-gen3
  # -- (string) S3 bucket name for log files.
  logsBucket: logs-gen3
  # -- (bool) Whether public datasets are enabled.
  publicDataSets: true
  # -- (string) Access level for tiers. acceptable values for `tier_access_level` are: `libre`, `regular` and `private`. If omitted, by default common will be treated as `private`
  tierAccessLevel: libre
  # -- (map) Controls network policy settings
  netPolicy:
    enabled: false
  # -- (int) Number of dispatcher jobs.
  dispatcherJobNum: "10"
  # -- (bool) If the service will be deployed with a Pod Disruption Budget. Note- you need to have more than 2 replicas for the pdb to be deployed.
  pdb: false
  # -- (int) The minimum amount of pods that are available at all times if the PDB is deployed.
  minAvialable: 1

# -- (bool) Whether Metrics are enabled.
metricsEnabled: false

# -- (int) Number of replicas for the deployment.
replicaCount: 1

# -- (map) Docker image information.
image:
  # -- (string) Docker repository.
  repository: quay.io/cdis/hatchery
  # -- (string) Docker pull policy.
  pullPolicy: IfNotPresent
  # -- (string) Overrides the image tag whose default is the chart appVersion.
  tag: ""

# -- (list) Docker image pull secrets.
imagePullSecrets: []

# -- (string) Override the name of the chart.
nameOverride: ""

# -- (string) Override the full name of the deployment.
fullnameOverride: ""

# -- (map) Kubernetes service information.
service:
  # -- (string) Type of service. Valid values are "ClusterIP", "NodePort", "LoadBalancer", "ExternalName".
  type: ClusterIP
  # -- (int) The port number that the service exposes.
  port: 80

# -- (map) Resource requests and limits for the containers in the pod
resources:
  # -- (map) The amount of resources that the container requests
  requests:
    # -- (string) The amount of CPU requested
    cpu: 0.1
    # -- (string) The amount of memory requested
    memory: 12Mi
  # -- (map) The maximum amount of resources that the container is allowed to use
  limits:
    # -- (string) The maximum amount of cpu the container can use
    cpu: 1.0
    # -- (string) The maximum amount of memory the container can use
    memory: 512Mi

# -- (map) Configuration for autoscaling the number of replicas
autoscaling:
  # -- (bool) Whether autoscaling is enabled or not
  enabled: false
  # -- (int) The minimum number of replicas to scale down to
  minReplicas: 1
  # -- (int) The maximum number of replicas to scale up to
  maxReplicas: 100
  # -- (int) The target CPU utilization percentage for autoscaling
  targetCPUUtilizationPercentage: 80
  # targetMemoryUtilizationPercentage: 80

# -- (map) Node selector labels.
nodeSelector: {}

# -- (list) Tolerations to use for the deployment.
tolerations: []

# -- (map) Affinity to use for the deployment.
affinity: {}

# -- (list) Environment variables to pass to the container
env:
  - name: HTTP_PORT
    value: "8000"
  - name: POD_NAMESPACE
    valueFrom:
      fieldRef:
        fieldPath: metadata.namespace

# -- (list) Volumes to attach to the container.
volumes:
  - name: hatchery-config
    configMap:
      name: manifest-hatchery

# -- (list) Volumes to mount to the container.
volumeMounts:
  - name: hatchery-config
    readOnly: true
    mountPath: /hatchery.json
    subPath: json

# -- (map) Hatchery sidcar container configuration.
hatchery:
  sidecarContainer:
    # -- (string) The maximum amount of CPU the sidecar container can use
    cpu-limit: "0.1"
    # -- (string) The maximum amount of memory the sidecar container can use
    memory-limit: 256Mi
    # -- (string) The sidecar image.
    image: quay.io/cdis/ecs-ws-sidecar:master
    # -- (map) Environment variables to pass to the sidecar container
    env:
      NAMESPACE: "{{ .Release.Namespace }}"
      HOSTNAME: "{{ .Values.global.hostname }}"
    # -- (list) Arguments to pass to the sidecare container.
    args: []
    # -- (list) Commands to run for the sidecar container.
    command:
      - "/bin/bash"
      - "./sidecar.sh"
    # -- (list) Commands that are run before the container is stopped.
    lifecycle-pre-stop:
      - su
      - "-c"
      - echo test
      - "-s"
      - "/bin/sh"
      - root

  # -- (list) Notebook configuration.
  containers:
    - target-port: 8888
      cpu-limit: "1.0"
      memory-limit: 2Gi
      name: "(Tutorials) Example Analysis Jupyter Lab Notebooks"
      image: quay.io/cdis/heal-notebooks:combined_tutorials__latest
      env:
        FRAME_ANCESTORS: https://{{ .Values.global.hostname }}
      args:
        - "--NotebookApp.base_url=/lw-workspace/proxy/"
        - "--NotebookApp.default_url=/lab"
        - "--NotebookApp.password=''"
        - "--NotebookApp.token=''"
        - "--NotebookApp.shutdown_no_activity_timeout=5400"
        - "--NotebookApp.quit_button=False"
      command:
        - start-notebook.sh
      path-rewrite: "/lw-workspace/proxy/"
      use-tls: "false"
      ready-probe: "/lw-workspace/proxy/"
      lifecycle-post-start:
        - "/bin/sh"
        - "-c"
        - export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; rm -rf /home/$IAM/pd/lost+found;
          ln -s /data /home/$IAM/pd/; true
      user-uid: 1000
      fs-gid: 100
      user-volume-location: "/home/jovyan/pd"
      gen3-volume-location: "/home/jovyan/.gen3"

  # -- (bool) Whether to skip node selector for . Defaults to `global.dev`.
  skipNodeSelector: false
  # -- (bool) Whether to use internal services url. Defaults to `global.dev`.
  useInternalServicesUrl: false

# Values to determine the labels that are used for the deployment, pod, etc.
# -- (string) Valid options are "production" or "dev". If invalid option is set- the value will default to "dev".
release: "production"
# -- (string) Valid options are "true" or "false". If invalid option is set- the value will default to "false".
criticalService: "true"
# -- (string) Label to help organize pods and their use. Any value is valid, but use "_" or "-" to divide words.
partOf: "Workspace-Tab"
# -- (map) Will completely override the selectorLabels defined in the common chart's _label_setup.tpl
selectorLabels:
# -- (map) Will completely override the commonLabels defined in the common chart's _label_setup.tpl
commonLabels: