NEWS

Changes in version 1.1.0 (2019-04-05)
+ Submitted package to Bioconductor.

Changes in version 1.1.1 (2019-05-03)
+ Added log2_ratio normalization option.
+ Fix a bug that prevented strand_specific and stitch mode to work together.

Changes in version 1.1.2 (2019-05-09)
+ rnaseq mode now sets strand_specific to TRUE by default.

Changes in version 1.1.3 (2019-05-13)
+ When parameter validation fails, the metagene2 object will now fall back to
  the previous set of parameters, instead of ending up in an invalid state.

Changes in version 1.1.4 (2019-07-12)
+ Improved documentation of control samples in design.

Changes in version 1.3.1 (2019-11-05)
+ Added the metagene2_heatmap function, which generates heatmap representation
  of the binned coverages underlying the metagene2 object.

Changes in version 1.3.3 (2019-11-13)
+ Fixed a bug which caused overlapping contiguous regions to be assigned the 
  wrong coverage values.
  
Changes in version 1.7.2 (2020-12-17)
+ Removed support for NCIS normalization, which relied on a now deprecated package.