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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_df_report)
export(add_df_report_no_rownames)
export(add_image_markdown_report)
export(add_text_report)
export(add_textfile_report)
export(add_title_report)
export(analyze_integrated)
export(build_report)
export(clustering)
export(filter_data)
export(find_all_DE)
export(get_demo_seurat_object)
export(initialize_report)
export(integrate)
export(integrate_data)
export(load_data)
export(make_analysis_report)
export(make_integration_report)
export(neighbors)
export(normalize_data)
export(pca)
export(plot_filter)
export(plot_filtering_stats)
export(plot_seurat_clustree)
export(plot_seurat_dim)
export(plot_seurat_elbow)
export(seurat_all_DE)
export(seurat_clustering)
export(seurat_compute_mt)
export(seurat_features)
export(seurat_filter)
export(seurat_integrate)
export(seurat_load_10x)
export(seurat_neighbors)
export(seurat_normalize)
export(seurat_pca)
export(seurat_scale)
export(seurat_umap)
export(umap)
import(dplyr)
import(readr)
importFrom(Seurat,Cells)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FetchData)
importFrom(Seurat,FindAllMarkers)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindIntegrationAnchors)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,IntegrateData)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,PercentageFeatureSet)
importFrom(Seurat,Read10X)
importFrom(Seurat,RenameCells)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,ScaleData)
importFrom(Seurat,SelectIntegrationFeatures)
importFrom(SeuratObject,Cells)
importFrom(SeuratObject,GetAssayData)
importFrom(clustree,clustree)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice_max)
importFrom(dplyr,slice_min)
importFrom(dplyr,summarise)
importFrom(ggplot2,aes)
importFrom(ggplot2,alpha)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(magrittr,"%>%")
importFrom(readr,write_csv)
importFrom(rmarkdown,render)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_to_title)
importFrom(tools,file_path_sans_ext)