From 4f611f56947c3c5ffc629ed7e5085c08be3af0f4 Mon Sep 17 00:00:00 2001
From: Mark Messner <mark.messner@gmail.com>
Date: Thu, 21 Mar 2024 20:33:45 -0500
Subject: [PATCH] Hopefully formatting fixed

---
 pyoptmat/flowrules.py | 5 ++++-
 pyoptmat/models.py    | 9 +++++----
 pyoptmat/ode.py       | 2 +-
 pyoptmat/optimize.py  | 2 ++
 pyoptmat/solvers.py   | 4 ++--
 5 files changed, 14 insertions(+), 8 deletions(-)

diff --git a/pyoptmat/flowrules.py b/pyoptmat/flowrules.py
index 987e2dd..ee05536 100644
--- a/pyoptmat/flowrules.py
+++ b/pyoptmat/flowrules.py
@@ -1,4 +1,4 @@
-# pylint: disable=abstract-method, useless-super-delegation, line-too-long, duplicate-code, too-many-lines
+# pylint: disable=abstract-method, useless-super-delegation, line-too-long, duplicate-code, too-many-lines, too-many-arguments, too-many-public-methods
 
 """
   Module containing inelastic flow rules.  These provide the rate of the
@@ -514,6 +514,9 @@ def f(self, T, e):
         return (torch.tanh(self.sf * (self.g(T, e) - self.g0())) + 1.0) / 2.0
 
     def g0(self):
+        """
+        The intercept value
+        """
         return (self.C_scale.scale(self.C) - self.B_scale.scale(self.B)) / self.A_scale(
             self.A
         )
diff --git a/pyoptmat/models.py b/pyoptmat/models.py
index 1aa9e64..ccca4dc 100644
--- a/pyoptmat/models.py
+++ b/pyoptmat/models.py
@@ -453,9 +453,9 @@ def __init__(
         base,
         temps,
         control,
+        *args,
         bisect_first=False,
         throw_on_scalar_fail=False,
-        *args,
         **kwargs
     ):
         super().__init__(*args, **kwargs)
@@ -566,12 +566,12 @@ def __init__(
         srate_fn,
         stress_fn,
         T_fn,
+        *args,
         min_erate=-1e2,
         max_erate=1e3,
         guess_erate=1.0e-3,
         bisect_first=False,
         throw_on_scalar_fail=False,
-        *args,
         **kwargs
     ):
         super().__init__(*args, **kwargs)
@@ -626,8 +626,9 @@ def RJ(erate):
             t, torch.cat([cs.unsqueeze(-1), y[..., 1:]], dim=-1), erate, cT
         )
 
-        # There is an annoying extra term that is the derivative of the history rate with respect to the
-        # solved for strain rate times the derivative of the strain rate with respect to history
+        # There is an annoying extra term that is the derivative of the
+        # history rate with respect to the solved for strain rate times
+        # the derivative of the strain rate with respect to history
         t1 = Je[..., 1:].unsqueeze(-1)
         t2 = utility.mbmm(1.0 / Je[..., :1].unsqueeze(-1), J[..., 0, 1:].unsqueeze(-2))
         t3 = utility.mbmm(t1, t2)
diff --git a/pyoptmat/ode.py b/pyoptmat/ode.py
index ce2398b..76ef0d8 100644
--- a/pyoptmat/ode.py
+++ b/pyoptmat/ode.py
@@ -1,4 +1,4 @@
-# pylint: disable=too-many-arguments
+# pylint: disable=too-many-arguments, too-many-instance-attributes
 
 """
     Module defining the key objects and functions to integrate ODEs
diff --git a/pyoptmat/optimize.py b/pyoptmat/optimize.py
index 06eb0b0..5bd6dcb 100644
--- a/pyoptmat/optimize.py
+++ b/pyoptmat/optimize.py
@@ -1,3 +1,5 @@
+# pylint: disable=too-many-instance-attributes, too-many-arguments, not-context-manager
+
 """
   Objects and helper functions to help with deterministic model calibration
   and statistical inference.
diff --git a/pyoptmat/solvers.py b/pyoptmat/solvers.py
index 7c7a1c1..658af48 100644
--- a/pyoptmat/solvers.py
+++ b/pyoptmat/solvers.py
@@ -30,7 +30,7 @@ def scalar_bisection(fn, a, b, atol=1.0e-6, miter=100):
     c = (a + b) / 2.0
     Rc, _ = fn(c)
 
-    for i in range(miter):
+    for _ in range(miter):
         if torch.all(torch.abs(Rc) < atol):
             break
 
@@ -60,7 +60,7 @@ def scalar_newton(fn, x0, atol=1.0e-6, miter=100, throw_on_fail=False):
     x = x0
     R, J = fn(x)
 
-    for i in range(miter):
+    for _ in range(miter):
         if torch.all(torch.abs(R) < atol):
             break