From 06036f1f25ee082d14382eeab10932b15831c8c5 Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 14 Apr 2023 14:20:37 +1000 Subject: [PATCH 1/2] added default data type to BIDS store (NiftiGzX) --- arcana/bids/data.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/arcana/bids/data.py b/arcana/bids/data.py index faea8c2..c7859bc 100644 --- a/arcana/bids/data.py +++ b/arcana/bids/data.py @@ -10,7 +10,7 @@ from arcana.core.data.store import LocalStore from fileformats.core import FileSet, Field from fileformats.generic import Directory -from fileformats.medimage.nifti import WithBids +from fileformats.medimage.nifti import WithBids, NiftiGzX from arcana.core.exceptions import ArcanaUsageError from arcana.core.data.tree import DataTree from arcana.core.data.set import Dataset @@ -81,6 +81,8 @@ class Bids(LocalStore): ["group", "session"], ) + DEFAULT_DATATYPE = NiftiGzX + ################################# # Abstract-method implementations ################################# From b8f07868bacea03c8c1895c62cb26bf247394abe Mon Sep 17 00:00:00 2001 From: Tom Close Date: Fri, 14 Apr 2023 14:22:41 +1000 Subject: [PATCH 2/2] removed codecov from pyproject.toml --- pyproject.toml | 1 - 1 file changed, 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 601eb9b..ca95ba8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -51,7 +51,6 @@ doc = [ "sphinx-click>=3.1", ] test = [ - "codecov", "fileformats-testing", "medimages4tests >=0.3", "pytest>=5.4.3",