v1.0.2

This is a minor update to NovelTree including two small changes:

1. An updated version of ClipKit (v2.1.1) is now implemented for a performance boost when using it to conduct alignment trimming/cleaning.
2. We have substantially simplified and pared down the model to download UniProt annotations through the API. Previously we included many optional return fields - however, some of these return fields became deprecated by UniProt, leading the COGEQC module to fail. We now only include the table return fields required to conduct MCL clustering inflation parameter selection by the COGEQC module.

NovelTree pub release v1.0.1-alpha

This release is associated with the pub "NovelTree: Highly parallelized phylogenomic inference".

This release includes one small bug fix present in v1.0.0-alpha caused by inclusion of the xref_tigrfam return field when querying UniProt using bioservices within the protein annotation module.

v1.0.0-alpha

This is the initial release of NovelTree.

Note: This release is deprecated - use version v1.0.1-alpha instead.