From 57fe18ef54825fa9ff673813080444374e219390 Mon Sep 17 00:00:00 2001
From: kevinlibuit <kevin@libuit.com>
Date: Fri, 5 Feb 2021 21:45:34 +0000
Subject: [PATCH] remove vadr inputs

---
 tasks/task_ont_pub_repo_submission.wdl | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/tasks/task_ont_pub_repo_submission.wdl b/tasks/task_ont_pub_repo_submission.wdl
index eea7444..dd119da 100644
--- a/tasks/task_ont_pub_repo_submission.wdl
+++ b/tasks/task_ont_pub_repo_submission.wdl
@@ -189,9 +189,6 @@ task compile {
   input {
     Array[File?] single_submission_fasta
     Array[File?] single_submission_meta
-    Array[Int] vadr_num_alerts
-    Int vadr_threshold
-    Int vadr_alerts=0
     String       repository
     String    docker_image = "staphb/seqyclean:1.10.09"
     Int       mem_size_gb = 1