.gitignore

# Local .terraform directories & files
**/.terraform/*
**/.terraform.lock.hcl

# .tfstate files
*.tfstate
*.tfstate.*

# Crash log files
crash.log

# Ignore any .tfvars files that are generated automatically for each Terraform run. Most
# .tfvars files are managed as part of configuration and so should be included in
# version control.
#
# example.tfvars

# Ignore override files as they are usually used to override resources locally and so
# are not checked in
override.tf
override.tf.json
*_override.tf
*_override.tf.json

# Include override files you do wish to add to version control using negated pattern
#
# !example_override.tf

# Include tfplan files to ignore the plan output of command: terraform plan -out=tfplan
# example: *tfplan*

# Nextflow workdirs and logs
work
*.nextflow*

# R & Rstudio files
.Rhistory
rstudio-prefs.json
rstudio-server.json
.rstudio


# Cache files
.cache

# Ignore repository data directory
/data

# intermediate reference and analysis files
workflows/rnaseq-ref-index/annotation/
workflows/rnaseq-ref-index/fasta/
workflows/*/data/

# Ignore software downloads
*.rpm
images/cellranger/cellranger*.tar.gz
images/cellranger/bcl2fastq*.tar.gz

# Ignore nextflow logs
workflows/nextflow_logs/

# Ignore results and sample-info
/results
/sample-info/