Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Test fix for docker actions failing after miniforge #744

Merged
merged 2 commits into from
Sep 3, 2024
Merged

Test fix for docker actions failing after miniforge #744

Changes from 1 commit
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
26c7dd1
Add back conda.sh to /etc/profile.d
jashapiro Sep 3, 2024
2a69137
Don't run test action if only dockerfile changed
jashapiro Sep 3, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 6 additions & 3 deletions analyses/cell-type-ewings/Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -35,9 +35,12 @@ RUN curl -L "https://github.com/conda-forge/miniforge/releases/latest/download/M
&& conda clean --tarballs --index-cache --packages --yes \
&& find /opt/conda -follow -type f -name '*.a' -delete \
&& find /opt/conda -follow -type f -name '*.pyc' -delete \
&& conda clean --force-pkgs-dirs --all --yes \
&& echo ". /opt/conda/etc/profile.d/conda.sh && conda activate base" >> /etc/skel/.bashrc \
&& echo ". /opt/conda/etc/profile.d/conda.sh && conda activate base" >> ~/.bashrc
&& conda clean --force-pkgs-dirs --all --yes

# Activate conda environments in bash
RUN ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh \
&& echo ". /opt/conda/etc/profile.d/conda.sh" >> /etc/skel/.bashrc \
&& echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc

# add conda-lock
RUN conda install conda-lock && conda clean --all --yes
Expand Down
Loading