diff --git a/analyses/cell-type-wilms-tumor-06/README.md b/analyses/cell-type-wilms-tumor-06/README.md index e3c7a6c9e..19d2d6ce6 100644 --- a/analyses/cell-type-wilms-tumor-06/README.md +++ b/analyses/cell-type-wilms-tumor-06/README.md @@ -162,7 +162,7 @@ Steps denoted `[Exploratory]` below are only run when `RUN_EXPLORATORY=1` is set - `[Exploratory]` Exploration of clustering, label transfers, marker genes and pathways: `notebook_template/03_clustering_exploration.Rmd` in `notebook_template` - `[Exploratory]` Compare results of label transfer for all samples: `notebook/04_annotation_Across_Samples_exploration.Rmd` - CNV inference using [`inferCNV`](https://github.com/broadinstitute/inferCNV/wiki) with endothelial and immune cells as reference from either the same patient or a pool of upfront resection Wilms tumor samples: `scripts/06_inferCNV.R` -- Combine label transfer and CNV to finalize the annotation of the Wilms tumor dataset: `notebook/07_annotation_Across_Samples_exploration.Rmd` +- Combine label transfer and CNV to finalize the annotation of the Wilms tumor dataset: `notebook/07_combined_annotation_across_samples_exploration.Rmd` ### Justification