From e7cbaeb59767acb66a1dc09416e36dd2beb992ec Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Tue, 3 Dec 2024 12:21:55 -0600 Subject: [PATCH 1/3] third group of ontology assignments --- .../panglao-cell-type-ontologies.tsv | 48 +++++++++---------- 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv index 6cbb42ed9..65e236ce7 100644 --- a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv +++ b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv @@ -129,30 +129,30 @@ CL:0000178 Leydig cell Leydig cells CL:1000909 kidney loop of Henle epithelial cell Loop of Henle cells CL:0002326 luminal epithelial cell of mammary gland Luminal epithelial cells CL:0002327 mammary gland epithelial cell Mammary epithelial cells -NA NA Meningeal cells -NA NA Merkel cells -NA NA Microfold cells -NA NA Microglia -NA NA Müller cells -NA NA Myeloid-derived suppressor cells -NA NA Myocytes -NA NA Myofibroblasts -NA NA Natural killer T cells -NA NA Neural stem/precursor cells -NA NA Neuroblasts -NA NA NK cells -NA NA Nuocytes -NA NA Oligodendrocyte progenitor cells -NA NA Osteoclast precursor cells -NA NA Oxyphil cells -NA NA Pancreatic progenitor cells -NA NA Parathyroid chief cells -NA NA Peri-islet Schwann cells -NA NA Principal cells -NA NA Proximal tubule cells -NA NA Pulmonary alveolar type I cells -NA NA Pulmonary alveolar type II cells -NA NA Pulmonary vascular smooth muscle cells +CL:0000708 leptomeningeal cell Meningeal cells +CL:0000242 Merkel cell Merkel cells +CL:0000682 M cell of gut Microfold cells +CL:0000129 microglial cell Microglia +CL:0000636 Mueller cell Müller cells +CL:0000889 myeloid suppressor cell Myeloid-derived suppressor cells +CL:0000746 cardiac muscle cell Myocytes +CL:0000186 myofibroblast cell Myofibroblasts +CL:0000814 NK lymphocyte Natural killer T cells +CL:0000047 neural stem cell Neural stem/precursor cells +CL:0000338 neuroblast (sensu Nematoda and Protostomia) Neuroblasts +CL:0000623 natural killer cell NK cells +CL:0001069 group 2 innate lymphoid cell Nuocytes +CL:0002453 oligodendrocyte precursor cell Oligodendrocyte progenitor cells +CL:0000778 mononuclear osteoclast Osteoclast precursor cells +CL:0002199 oxyphil cell of parathyroid gland Oxyphil cells +CL:0002351 progenitor cell of endocrine pancreas Pancreatic progenitor cells +CL:0000446 chief cell of parathyroid gland Parathyroid chief cells +CL:0002573 Schwann cell Peri-islet Schwann cells +CL:0005009 renal principal cell Principal cells +CL:0002306 epithelial cell of proximal tubule Proximal tubule cells +CL:0002062 pulmonary alveolar type 1 cell Pulmonary alveolar type I cells +CL:0002063 pulmonary alveolar type 1 cell Pulmonary alveolar type II cells +CL:0000359 vascular associated smooth muscle cell Pulmonary vascular smooth muscle cells NA NA Purkinje fiber cells NA NA Purkinje neurons NA NA Pyramidal cells From 732b3b0cbfb4cd594b66de2bed2a27b8832df476 Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Tue, 3 Dec 2024 12:57:25 -0600 Subject: [PATCH 2/3] monocyte for OCPs --- .../references/panglao-cell-type-ontologies.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv index 65e236ce7..85464ef5c 100644 --- a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv +++ b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv @@ -143,7 +143,7 @@ CL:0000338 neuroblast (sensu Nematoda and Protostomia) Neuroblasts CL:0000623 natural killer cell NK cells CL:0001069 group 2 innate lymphoid cell Nuocytes CL:0002453 oligodendrocyte precursor cell Oligodendrocyte progenitor cells -CL:0000778 mononuclear osteoclast Osteoclast precursor cells +CL:0000576 monocyte Osteoclast precursor cells CL:0002199 oxyphil cell of parathyroid gland Oxyphil cells CL:0002351 progenitor cell of endocrine pancreas Pancreatic progenitor cells CL:0000446 chief cell of parathyroid gland Parathyroid chief cells From 5b1781deebe34a5255ff670cc033e92c4f68a5d9 Mon Sep 17 00:00:00 2001 From: Ally Hawkins <54039191+allyhawkins@users.noreply.github.com> Date: Tue, 3 Dec 2024 15:26:42 -0600 Subject: [PATCH 3/3] type 1 -> type 2 Co-authored-by: Jaclyn Taroni <19534205+jaclyn-taroni@users.noreply.github.com> --- .../references/panglao-cell-type-ontologies.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv index 85464ef5c..d9f943551 100644 --- a/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv +++ b/analyses/cell-type-consensus/references/panglao-cell-type-ontologies.tsv @@ -151,7 +151,7 @@ CL:0002573 Schwann cell Peri-islet Schwann cells CL:0005009 renal principal cell Principal cells CL:0002306 epithelial cell of proximal tubule Proximal tubule cells CL:0002062 pulmonary alveolar type 1 cell Pulmonary alveolar type I cells -CL:0002063 pulmonary alveolar type 1 cell Pulmonary alveolar type II cells +CL:0002063 pulmonary alveolar type 2 cell Pulmonary alveolar type II cells CL:0000359 vascular associated smooth muscle cell Pulmonary vascular smooth muscle cells NA NA Purkinje fiber cells NA NA Purkinje neurons