diff --git a/.github/workflows/run_cell-type-nonETP-ALL-03.yml b/.github/workflows/run_cell-type-nonETP-ALL-03.yml index 7880d3596..b88bf876b 100644 --- a/.github/workflows/run_cell-type-nonETP-ALL-03.yml +++ b/.github/workflows/run_cell-type-nonETP-ALL-03.yml @@ -59,7 +59,8 @@ jobs: libfontconfig1-dev \ libharfbuzz-dev \ libfribidi-dev \ - libtiff5-dev + libtiff5-dev \ + jags - name: Set up renv uses: r-lib/actions/setup-renv@v2 diff --git a/analyses/cell-type-nonETP-ALL-03/Dockerfile b/analyses/cell-type-nonETP-ALL-03/Dockerfile index dffa86a9b..ce6ff54bb 100644 --- a/analyses/cell-type-nonETP-ALL-03/Dockerfile +++ b/analyses/cell-type-nonETP-ALL-03/Dockerfile @@ -52,6 +52,9 @@ RUN conda-lock install -n ${ENV_NAME} conda-lock.yml \ # Copy the renv.lock file from the host environment to the image COPY renv.lock renv.lock +# Temporarily install Rhtslib separately +RUN Rscript -e 'BiocManager::install("Rhtslib")' + # restore from renv.lock file and clean up to reduce image size RUN Rscript -e 'renv::restore()' \ && rm -rf ~/.cache/R/renv \