Merge remote-tracking branch 'origin/main' into UTSouthwesternDSSR/no…

…nETP
AlexsLemonade · Oct 29, 2024 · 0f075ed · 0f075ed
2 parents a059dde + 7f532da
commit 0f075ed
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diff --git a/.github/workflows/run_cell-type-nonETP-ALL-03.yml b/.github/workflows/run_cell-type-nonETP-ALL-03.yml
@@ -59,7 +59,8 @@ jobs:
             libfontconfig1-dev \
             libharfbuzz-dev \
             libfribidi-dev \
-            libtiff5-dev
+            libtiff5-dev \
+            jags
 
       - name: Set up renv
         uses: r-lib/actions/setup-renv@v2

diff --git a/analyses/cell-type-nonETP-ALL-03/Dockerfile b/analyses/cell-type-nonETP-ALL-03/Dockerfile
@@ -52,6 +52,9 @@ RUN conda-lock install -n ${ENV_NAME} conda-lock.yml \
 # Copy the renv.lock file from the host environment to the image
 COPY renv.lock renv.lock
 
+# Temporarily install Rhtslib separately
+RUN Rscript -e 'BiocManager::install("Rhtslib")'
+
 # restore from renv.lock file and clean up to reduce image size
 RUN Rscript -e 'renv::restore()' \
   && rm -rf ~/.cache/R/renv \