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Run all analysis workflows #14

Run all analysis workflows

Run all analysis workflows #14

Re-run triggered November 7, 2024 13:50
Status Success
Total duration 50m 26s
Artifacts

run_all-modules.yml

on: workflow_dispatch
hello-R  /  run-module
15m 4s
hello-R / run-module
hello-python  /  run-module
5m 33s
hello-python / run-module
doublet-detection  /  run-module
3h 27m
doublet-detection / run-module
cell-type-ewings  /  run-module
29m 46s
cell-type-ewings / run-module
cell-type-wilms-06  /  run-module
1h 16m
cell-type-wilms-06 / run-module
cell-type-wilms-14  /  run-module
49m 34s
cell-type-wilms-14 / run-module
cell-type-ETP-ALL-03  /  run-module
49m 59s
cell-type-ETP-ALL-03 / run-module
cell-type-nonETP-ALL-03  /  run-module
40m 3s
cell-type-nonETP-ALL-03 / run-module
metacells  /  run-module
3m 8s
metacells / run-module
check-jobs
2s
check-jobs
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Annotations

37 warnings
cell-type-nonETP-ALL-03 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-nonETP-ALL-03 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-nonETP-ALL-03 / run-module
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-wilms-14 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-wilms-14 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-wilms-14 / run-module
The default method for RunUMAP has changed from calling Python UMAP via reticulate to the R-native UWOT using the cosine metric
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-wilms-06 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-wilms-14 / run-module
The default method for RunUMAP has changed from calling Python UMAP via reticulate to the R-native UWOT using the cosine metric
cell-type-nonETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-wilms-06 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-wilms-06 / run-module
The default method for RunUMAP has changed from calling Python UMAP via reticulate to the R-native UWOT using the cosine metric
hello-python / run-module
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
hello-R / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
hello-R / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
metacells / run-module
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
cell-type-ETP-ALL-03 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-ETP-ALL-03 / run-module
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
cell-type-ETP-ALL-03 / run-module
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results
cell-type-ETP-ALL-03 / run-module
Scaling data with a low number of groups may produce misleading results