Run all analysis workflows #8
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# This is a workflow to all of the analysis module workflows | |
# | |
# This workflow will run with the following triggers | |
# - Manual trigger | |
# - Periodic running on a timer | |
name: Run all analysis workflows | |
on: | |
schedule: # run monthly on the 4th (intended to run after docker images are built) | |
- cron: "0 0 4 * *" | |
workflow_dispatch: | |
jobs: | |
# Modules to run | |
# Note: only 20 modules can be run per workflow | |
hello-R: | |
uses: ./.github/workflows/run_hello-R.yml | |
hello-python: | |
uses: ./.github/workflows/run_hello-python.yml | |
doublet-detection: | |
uses: ./.github/workflows/run_doublet-detection.yml | |
cell-type-ewings: | |
uses: ./.github/workflows/run_cell-type-ewings.yml | |
## Add additional modules above this comment, and to the needs list below | |
check-jobs: | |
if: ${{ always() }} | |
needs: | |
- hello-R | |
- hello-python | |
- doublet-detection | |
- cell-type-ewings | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout template file | |
uses: actions/checkout@v4 | |
with: | |
sparse-checkout: | | |
.github/cron-issue-templates/all-modules-issue-template.md | |
sparse-checkout-cone-mode: false | |
- name: Post issue with results from running all modules | |
if: contains(needs.*.result, 'failure') | |
uses: peter-evans/create-issue-from-file@v5 | |
with: | |
title: Analysis module failing in CI | |
content-filepath: | | |
.github/cron-issue-templates/all-modules-issue-template.md | |
labels: | | |
OpenScPCA admin | |
ci | |
- name: Check for failures or cancelled jobs | |
if: contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled') | |
run: echo "Job failed" && exit 1 |