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Syngizer problem #7

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jjgao opened this issue Mar 27, 2014 · 0 comments
Open

Syngizer problem #7

jjgao opened this issue Mar 27, 2014 · 0 comments

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@jjgao
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jjgao commented Mar 27, 2014

I could get GI using Synergizer, but I keep getting a backtrace:
java.lang.NullPointerException
at org.cytoscape.filter.internal.column.ColumnFilter.accepts(ColumnFilter.java:190)
at org.cytoscape.filter.internal.column.ColumnFilter.accepts(ColumnFilter.java:24)
at org.cytoscape.filter.internal.composite.CompositeFilterImpl.accepts(CompositeFilterImpl.java:106)
at org.cytoscape.filter.internal.view.FilterWorker.doWork(FilterWorker.java:62)
at org.cytoscape.filter.internal.view.LazyWorkQueue$1.run(LazyWorkQueue.java:35)
at java.lang.Thread.run(Thread.java:744)
java.lang.NullPointerException
at org.cytoscape.filter.internal.column.ColumnFilter.accepts(ColumnFilter.java:190)
at org.cytoscape.filter.internal.column.ColumnFilter.accepts(ColumnFilter.java:24)
at org.cytoscape.filter.internal.composite.CompositeFilterImpl.accepts(CompositeFilterImpl.java:106)
at org.cytoscape.filter.internal.view.FilterWorker.doWork(FilterWorker.java:62)
at org.cytoscape.filter.internal.view.LazyWorkQueue$1.run(LazyWorkQueue.java:35)
at java.lang.Thread.run(Thread.java:744)
java.lang.NullPointerException
at java.net.URLEncoder.encode(URLEncoder.java:205)
at org.bridgedb.webservice.bridgerest.BridgeRest$UrlBuilder.named(BridgeRest.java:255)
at org.bridgedb.webservice.bridgerest.BridgeRest.mapID(BridgeRest.java:346)
at org.bridgedb.impl.InternalUtils.mapMultiFromSingle(InternalUtils.java:69)
at org.bridgedb.webservice.bridgerest.BridgeRest.mapID(BridgeRest.java:331)
at org.bridgedb.IDMapperStack.mapIDnormal(IDMapperStack.java:294)
at org.bridgedb.IDMapperStack.mapID(IDMapperStack.java:274)
at org.bridgedb.cytoscape.internal.util.IDMapperWrapper.mapID(IDMapperWrapper.java:117)
at org.bridgedb.cytoscape.internal.AttributeBasedIDMappingImpl.map(AttributeBasedIDMappingImpl.java:111)
at org.bridgedb.cytoscape.internal.task.AttributeBasedIDMappingTask.run(AttributeBasedIDMappingTask.java:109)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.innerRun(JDialogTaskManager.java:321)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.run(JDialogTaskManager.java:350)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
Task-Thread-21-Factory-0x2c0ea67 ERROR [TaskMonitor.org.bridgedb.cytoscape.internal.task.AttributeBasedIDMappingTask] - No IDs were mapped. Please make sure you seleceted the corrected ID mapping resources and source ID types.

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