Memory improvements (1/3): Introduce new data access layer and schemas #7814
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| # Copyright 2021 Agnostiq Inc. | |
| # | |
| # This file is part of Covalent. | |
| # | |
| # Licensed under the Apache License 2.0 (the "License"). A copy of the | |
| # License may be obtained with this software package or at | |
| # | |
| # https://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Use of this file is prohibited except in compliance with the License. | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| name: tests | |
| on: | |
| pull_request: | |
| workflow_call: | |
| push: | |
| branches: | |
| - develop | |
| paths-ignore: | |
| - CHANGELOG.md | |
| - VERSION | |
| workflow_dispatch: | |
| inputs: | |
| commit_sha: | |
| description: "Commit SHA used for testing" | |
| type: string | |
| required: true | |
| jobs: | |
| build_test_matrix: | |
| name: Build Test Matrix | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.filter-matrix.outputs.matrix }} | |
| steps: | |
| - name: Check out head | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - name: Filter test matrix | |
| id: filter-matrix | |
| run: | | |
| matrix=$(jq --arg trigger "${{ github.event_name }}" 'map(. | select(.trigger | index($trigger)))' .github/workflows/test_matrix.json) | |
| echo "Test matrix:" | |
| echo "$matrix" | jq | |
| echo ::set-output name=matrix::{\"include\":$(echo $matrix)} | |
| tests: | |
| needs: build_test_matrix | |
| name: ${{ matrix.name }} | |
| strategy: | |
| matrix: ${{fromJson(needs.build_test_matrix.outputs.matrix)}} | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| COVALENT_SERVER_IFACE_ANY: true | |
| container: ${{ matrix.container }} | |
| continue-on-error: ${{ matrix.experimental }} | |
| outputs: | |
| codecov: ${{ steps.local-codecov.outputs.local_codecov }} | |
| steps: | |
| - name: Check out head | |
| if: github.event_name != 'workflow_dispatch' | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - name: Check out SHA | |
| if: > | |
| github.event_name == 'workflow_dispatch' | |
| && github.event.inputs.commit_sha | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| fetch-depth: 0 | |
| ref: github.event.inputs.commit_sha | |
| - uses: dorny/paths-filter@v2 | |
| if: github.event_name == 'pull_request' | |
| id: modified-files | |
| with: | |
| filters: | | |
| sdk: | |
| - 'covalent/**' | |
| - 'tests/covalent_tests/**' | |
| dispatcher: | |
| - 'covalent_dispatcher/**' | |
| - 'tests/covalent_dispatcher_tests/**' | |
| ui_backend: | |
| - 'covalent_ui/*.py' | |
| - 'tests/covalent_ui_backend_tests/**' | |
| ui_frontend: | |
| - 'covalent_ui/webapp/**' | |
| functional_tests: | |
| - 'tests/functional_tests/**' | |
| build: | |
| - 'MANIFEST.in' | |
| - '**/requirements.txt' | |
| - 'requirements-client.txt' | |
| - 'setup.py' | |
| actions: | |
| - '.github/workflows/*' | |
| - '.github/actions/**' | |
| - name: Generate environment variables | |
| run: | | |
| if ${{ matrix.os == 'ubuntu-latest' | |
| && contains(matrix.container, 'debian11-py38') | |
| && matrix.backend == 'dask' }} ; then | |
| RECOMMENDED_PLATFORM=true | |
| fi | |
| if [ ${{ steps.modified-files.outputs.sdk }} = 'true' ] \ | |
| || [ ${{ steps.modified-files.outputs.dispatcher }} = 'true' ] \ | |
| || [ ${{ steps.modified-files.outputs.ui_backend }} = 'true' ] ; then | |
| NEED_PYTHON=true | |
| fi | |
| if [ ${{ steps.modified-files.outputs.ui_frontend }} = 'true' ] ; then | |
| NEED_FRONTEND=true | |
| fi | |
| if [ ${{ github.event_name }} != 'pull_request' ] \ | |
| || [ ${{ steps.modified-files.outputs.functional_tests }} = 'true' ] \ | |
| || [ ${{ steps.modified-files.outputs.build }} = 'true' ] \ | |
| || [ ${{ steps.modified-files.outputs.actions }} = 'true' ] ; then | |
| BUILD_AND_RUN_ALL=true | |
| fi | |
| echo "RECOMMENDED_PLATFORM=$RECOMMENDED_PLATFORM" >> $GITHUB_ENV | |
| echo "NEED_PYTHON=$NEED_PYTHON" >> $GITHUB_ENV | |
| echo "NEED_FRONTEND=$NEED_FRONTEND" >> $GITHUB_ENV | |
| echo "BUILD_AND_RUN_ALL=$BUILD_AND_RUN_ALL" >> $GITHUB_ENV | |
| - name: Set up Python | |
| if: > | |
| contains(matrix.os, 'macos') | |
| && (env.NEED_PYTHON || env.BUILD_AND_RUN_ALL) | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Conda | |
| id: install-conda | |
| if: env.NEED_PYTHON || env.BUILD_AND_RUN_ALL | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: true | |
| activate-environment: true | |
| - name: Install Python dependencies | |
| id: install-python-deps | |
| if: env.NEED_PYTHON || env.BUILD_AND_RUN_ALL | |
| run: | | |
| pip install --no-cache-dir -r ./requirements.txt | |
| pip install --no-cache-dir -r ./tests/requirements.txt | |
| - name: Set up Node | |
| if: env.NEED_FRONTEND || env.BUILD_AND_RUN_ALL | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version-file: 'covalent_ui/webapp/.nvmrc' | |
| - name: Build webapp | |
| if: env.NEED_FRONTEND || env.BUILD_AND_RUN_ALL | |
| uses: nick-fields/retry@v2 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 2 | |
| command: | | |
| cd ./covalent_ui/webapp | |
| yarn install | |
| yarn build | |
| - name: Transform semver version to pep440 | |
| id: version-transform | |
| uses: ./.github/actions/version-transform | |
| with: | |
| version-path: VERSION | |
| - name: Build distribution | |
| id: build-dist | |
| if: env.NEED_PYTHON || env.BUILD_AND_RUN_ALL | |
| run: python setup.py sdist | |
| - name: Validate distribution | |
| if: env.BUILD_AND_RUN_ALL | |
| run: | | |
| VERSION="${{ steps.version-transform.outputs.version }}" | |
| echo "Using transformed VERSION: $VERSION" | |
| cd dist | |
| tar xzf covalent-${VERSION}.tar.gz | |
| diff -x .gitignore -r covalent-${VERSION}/covalent ../covalent | |
| diff -x .gitignore -r covalent-${VERSION}/covalent_dispatcher ../covalent_dispatcher | |
| diff -x README.md -r covalent-${VERSION}/covalent_migrations ../covalent_migrations | |
| diff -x .gitignore -x README.md -x webapp covalent-${VERSION}/covalent_ui ../covalent_ui | |
| diff -r covalent-${VERSION}/covalent_ui/webapp/build ../covalent_ui/webapp/build | |
| rm -rf covalent-${VERSION}/ | |
| - name: Install Covalent | |
| if: steps.build-dist.outcome == 'success' | |
| run: pip install dist/covalent-*.tar.gz | |
| - name: Start Covalent dispatcher server | |
| if: env.BUILD_AND_RUN_ALL | |
| id: covalent_start | |
| run: | | |
| covalent db migrate | |
| if [ "${{ matrix.backend }}" = 'dask' ] ; then | |
| covalent start -d | |
| elif [ "${{ matrix.backend }}" = 'local' ] ; then | |
| covalent start --no-cluster -d | |
| else | |
| echo "Invalid backend specified in test matrix." | |
| exit 1 | |
| fi | |
| env: | |
| COVALENT_EXECUTOR_DIR: doc/source/how_to/execution/custom_executors | |
| - name: Run functional tests and measure coverage | |
| id: functional-tests | |
| if: env.BUILD_AND_RUN_ALL | |
| run: PYTHONPATH=$PWD/ pytest -vvs --reruns=5 tests/functional_tests --cov=covalent --cov=covalent_dispatcher --cov-config=.coveragerc | |
| - name: Generate functional test coverage report | |
| id: functional-coverage | |
| if: steps.functional-tests.outcome == 'success' | |
| run: coverage xml -o functional_tests_coverage.xml | |
| - name: Run SDK tests and measure coverage | |
| id: sdk-tests | |
| if: > | |
| steps.modified-files.outputs.sdk == 'true' | |
| || env.BUILD_AND_RUN_ALL | |
| run: PYTHONPATH=$PWD/ pytest -vvs --reruns=5 tests/covalent_tests --cov=covalent --cov-config=.coveragerc | |
| - name: Generate SDK coverage report | |
| id: sdk-coverage | |
| if: steps.sdk-tests.outcome == 'success' | |
| run: coverage xml -o sdk_coverage.xml | |
| - name: Run dispatcher tests and measure coverage | |
| id: dispatcher-tests | |
| if: > | |
| steps.modified-files.outputs.dispatcher == 'true' | |
| || env.BUILD_AND_RUN_ALL | |
| run: PYTHONPATH=$PWD/ pytest -vvs --reruns=5 tests/covalent_dispatcher_tests --cov=covalent_dispatcher --cov-config=.coveragerc | |
| - name: Generate dispatcher coverage report | |
| id: dispatcher-coverage | |
| if: steps.dispatcher-tests.outcome == 'success' | |
| run: coverage xml -o dispatcher_coverage.xml | |
| - name: Run UI backend tests and measure coverage | |
| id: ui-backend-tests | |
| if: > | |
| steps.modified-files.outputs.ui_backend == 'true' | |
| || env.BUILD_AND_RUN_ALL | |
| run: PYTHONPATH=$PWD/ pytest -vvs --reruns=5 tests/covalent_ui_backend_tests --cov=covalent_ui --cov-config=.coveragerc | |
| - name: Generate UI backend coverage report | |
| id: ui-backend-coverage | |
| if: steps.ui-backend-tests.outcome == 'success' | |
| run: coverage xml -o ui_backend_coverage.xml | |
| - name: Run UI frontend tests and measure coverage | |
| id: ui-frontend-tests | |
| if: > | |
| steps.modified-files.outputs.ui_frontend == 'true' | |
| || env.BUILD_AND_RUN_ALL | |
| run: | | |
| cd covalent_ui/webapp | |
| npm test -- --coverage --watchAll=false --maxWorkers=50% | |
| - name: Dump Covalent logs | |
| if: > | |
| steps.covalent_start.outcome == 'success' | |
| && failure() | |
| run: covalent logs | |
| - name: Upload SDK report to Codecov | |
| id: upload-sdk-report | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && (github.event_name == 'schedule' | |
| || steps.sdk-coverage.outcome == 'success') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./sdk_coverage.xml | |
| flags: SDK | |
| name: "SDK Unit Tests" | |
| fail_ci_if_error: true | |
| - name: Upload Dispatcher report to Codecov | |
| id: upload-dispatcher-report | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && (github.event_name == 'schedule' | |
| || steps.dispatcher-coverage.outcome == 'success') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./dispatcher_coverage.xml | |
| flags: Dispatcher | |
| name: "Dispatcher Unit Tests" | |
| fail_ci_if_error: true | |
| - name: Upload Functional report to Codecov | |
| id: upload-functional-report | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && steps.functional-coverage.outcome == 'success' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./functional_tests_coverage.xml | |
| flags: Functional_Tests | |
| name: "Functional Tests" | |
| fail_ci_if_error: true | |
| - name: Upload UI backend report to Codecov | |
| id: upload-ui-backend-report | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && (github.event_name == 'schedule' | |
| || steps.ui-backend-coverage.outcome == 'success') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./ui_backend_coverage.xml | |
| flags: UI_Backend | |
| name: "UI Backend Unit Tests" | |
| fail_ci_if_error: true | |
| - name: Upload UI frontend report to Codecov | |
| id: upload-ui-frontend-report | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && (github.event_name == 'schedule' | |
| || steps.ui-frontend-tests.outcome == 'success') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ./covalent_ui/webapp/coverage/clover.xml | |
| flags: UI_Frontend | |
| name: "UI Frontend Unit Tests" | |
| fail_ci_if_error: true | |
| - name: Local Codecov | |
| id: local-codecov | |
| if: > | |
| env.RECOMMENDED_PLATFORM | |
| && github.event_name != 'workflow_dispatch' | |
| && github.event_name != 'schedule' | |
| run: | | |
| if ${{ steps.upload-sdk-report.outcome == 'skipped' | |
| && steps.upload-dispatcher-report.outcome == 'skipped' | |
| && steps.upload-functional-report.outcome == 'skipped' | |
| && steps.upload-ui-backend-report.outcome == 'skipped' | |
| && steps.upload-ui-frontend-report.outcome == 'skipped' }} ; then | |
| local_codecov=true | |
| fi | |
| echo "::set-output name=local_codecov::${local_codecov}" | |
| - name: Alert Slack | |
| if: > | |
| github.event_name == 'schedule' | |
| && failure() | |
| uses: rtCamp/action-slack-notify@v2 | |
| env: | |
| SLACK_CHANNEL: "covalent-ci" | |
| SLACK_USERNAME: "CovalentOpsBot" | |
| SLACK_MESSAGE: "The tests.yml workflow is failing in develop!" | |
| SLACK_COLOR: ${{ job.status }} | |
| SLACK_TITLE: ":warning: Attention Required :warning:" | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_ALERT_WEBHOOK }} | |
| codecov_patch: | |
| needs: tests | |
| name: "codecov/patch" | |
| if: needs.tests.outputs.codecov == 'true' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "No report needed." | |
| codecov_project: | |
| needs: tests | |
| name: "codecov/project" | |
| if: needs.tests.outputs.codecov == 'true' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "No report needed." |