From cf5c97b4b9be033c554d4a6ff20263795e0c6f78 Mon Sep 17 00:00:00 2001 From: Emma Rand <7593411+3mmaRand@users.noreply.github.com> Date: Wed, 21 Feb 2024 12:00:42 +0000 Subject: [PATCH] Update README.md --- README.md | 79 +++++++++---------------------------------------------- 1 file changed, 12 insertions(+), 67 deletions(-) diff --git a/README.md b/README.md index 72dd2b6..1cbaa0b 100644 --- a/README.md +++ b/README.md @@ -65,85 +65,30 @@ Tutor-led for Beginners: [Introduction to R and working with data](https://3mma or Supported learning for those with some R experience [Tidying data and the tidyverse including the pipe](https://3mmarand.github.io/pgr_reproducibility/slides/04_tidying_data_and_the_tidyverse.html) -1200 - 1245 Lunch +1200 - 1300 Lunch -1245 - 1330 +1300 - 1330 Tutor-led for Everyone: [Project-oriented workflow](https://3mmarand.github.io/pgr_reproducibility/slides/03_rstudio_projects.html) -1330 - 1430 -Tutor-led for Everyone:[ R Markdown for Reproducible Reports](https://3mmarand.github.io/pgr_reproducibility/slides/06_r_markdown_for_reproducible_reports.html) +1330 - 1445 +Tutor-led for Everyone: Quarto for reproducible reporting -1430 - 1515 Tea and coffee break with Special Interests Group launch +1445 - 1515 Tea and coffee break 1515 - 1645 -Continuation of Tutor-led for Everyone:[ R Markdown for Reproducible Reports](https://3mmarand.github.io/pgr_reproducibility/slides/06_r_markdown_for_reproducible_reports.html) - - - - +Continuation of Tutor-led for Everyone: Quarto for reproducible reporting # Computing requirements Laptops should have the following installed **prior** to attending attempting the materials. -- R version 4.0 or higher -- RStudio (1.4) -- OS-specific development tools as detailed below -- these packages from CRAN: `devtools`, `usethis`, `tidyverse`, `janitor`, `rticles`, `bookdown`, `tinytex` -- Once `tinytex` is installed, run: `tinytex::install_tinytex()` - -## Installing R - -Download the pre-compiled binary for your OS from https://cloud.r-project.org/ and install. More specifically: - -**For Windows** - -Click "Download R for Windows", then "base", then "Download R 4.x.x for Windows". This will download an `.exe` file; once downloaded, open to start the installation. You can accept all the defaults. - -**For Mac** - -Click "Download R for (Mac) OS X", then "R-4.x.x.pkg" to download the installer. -Run the installer to complete installation. You can accept all the defaults. - -**For Linux** - -Click "Download R for Linux". Instructions on installing are given for Debian, Redhat, Suse and Ubuntu distributions. Where there is a choice, install both `r-base` and `r-base-dev`. - -## Installing R Studio - -Download and install the version for your OS from: https://rstudio.com/products/rstudio/download/#download. -You can accept all the defaults. - -**For Windows with no admin rights** - -Download the `.zip` source archive under "Zip/Tarballs". Extract the files to a folder where you have write access, e.g. `C:\Users\username\RStudio`. In this folder, open the `bin` directory and find the RStudio program: it is named `rstudio.exe`, but the file extension will typically be hidden, so look for `rstudio`. Right-click this executable to create a desktop shortcut. Double-click the executable or use the shortcut to open. - -## Development Tools -Some additional tools may be required to compile R packages from source. - -**For Windows with no admin rights** - -Download the latest (recommended) Rtools40 installer, Rtools.exe, from https://cran.r-project.org/bin/windows/Rtools/. Run the installer keeping the default settings. - -**For Windows with admin rights** - -Download the latest Rtools installer from https://cran.r-project.org/bin/windows/Rtools/. Run the installer making the following selections: keep the default settings for the installation location and components to install; check the box to add rtools to the system PATH. - -**For Mac** - -Install XCode. Either: - -Download and install XCode from the Mac AppStore: http://itunes.apple.com/us/app/xcode/id497799835?mt=12 -Within XCode go to Preferences : Downloads and install the Command Line Tools -Or for a smaller download size: - -Register as an Apple Developer (free) here: https://developer.apple.com/programs/register/ -Download the Command Line Tools for XCode appropriate for the version of OS X you are running from here: https://developer.apple.com/downloads/ - -**For Linux** - -If you installed r-base-dev, when installing R, you should have all you need to build packages from source. Otherwise return to the instructions for installing R for your distribution and follow the instructions there to install the additional tools. +- R version 4.3.1 or higher: https://cloud.r-project.org/ +- RStudio Version: 2023.12.1+402 or higher: https://posit.co/download/rstudio-desktop/ +- Quarto v1.4.550 or higher: https://quarto.org/docs/get-started/ +- Development Tools: [RTools (windows)](https://cran.r-project.org/bin/windows/Rtools/) or [xcode(mac)](http://itunes.apple.com/us/app/xcode/id497799835?mt=12) +- these R packages from CRAN: `devtools`, `usethis`, `tidyverse`, `janitor` +- quarto install tinytex ## Installing packages