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"diffusivity" in both white and gray matter #31

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nSpotorno opened this issue May 1, 2022 · 0 comments
Open

"diffusivity" in both white and gray matter #31

nSpotorno opened this issue May 1, 2022 · 0 comments
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@nSpotorno
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Dear experts,

I am working on a project looking at changes over time in both white and grey matter in aging and neurodegeneration.
the available diffusion data have been acquired with low b-values (b values: 0; 1000; 64 directions; no blip-up/blip-down design) on a SIEMENS Trio scanner. Currently I have analyzed the data following a standard DTI pipeline (FSL + DTITK) and focused on white matter. I have to questions:

  1. Regarding the analysis in white matter: would it make sense to use MRtrix3Tissue + FBA pipeline to generate fibre cross-section and (maybe) fiber density metrics with these data? I think I would focus more to FC but I am not sure how accurate the metric could be in this context (i.e., low b values).
  2. Regarding the analysis in gray matter: I would like to perform an analysis similar to the one performed in Kelly et al 2022, Neuroimage (very nice paper!). I am in particular referring to use the tissue microstructural and free-water composition metrics. However, I am not sure to what extent my data would provide an adequate input for such approach.

Any consideration and suggestion would be very much appreciated!

All the best,
Nicola

@nSpotorno nSpotorno added the question Question label May 1, 2022
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