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NOTES.md

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Needs to be a very long runtime due to giant genome size

  • 1906 (E muscae)
  • 604 (A. psidii)

to Exclude

  • GCA_024196135.1 // JAMQCK000000000 is perhaps a hybrid due to the nature as a Pluerotous/ Saccharomyces fusant?
  • Ophiocordyceps_xuefengensis - very few proteins match despite it being a 'fungus' - BUSCO is failing
  • contaminant

Failed predictions

These can likely be due to being Microsporidia, having a genome deposit that is too small, or not being a fungus?

  • Xylaria_striata
  • Vittaforma_corneae
  • Vairimorpha_necatrix
  • Vairimorpha_ceranae
  • Vairimorpha_bombi
  • Vairimorpha_apis
  • Uromyces_transversalis
  • Tubulinosema_ratisbonensis
  • Trachipleistophora_hominis
  • Toxicocladosporium_irritans
  • Terramyces_sp._JEL0728
  • Spraguea_lophii
  • Schizosaccharomyces_sp._A1_LZ-2022
  • Sanchytrium_tribonematis
  • Rozella_allomycis
  • Ramulispora_sorghi
  • Pseudoloma_neurophilia
  • Phakopsora_pachyrhizi
  • Pancytospora_epiphaga
  • Ordospora_pajunii
  • Ordospora_colligata
  • Ophiocordyceps_xuefengensis
  • Olpidium_bornovanus
  • Nosema_muscidifuracis
  • Nosema_granulosis
  • Nosema_bombycis
  • Nidularia_pulvinata
  • Nematocida_sp._LUAm3
  • Nematocida_sp._LUAm2
  • Nematocida_sp._LUAm1
  • Nematocida_sp._ERTm5
  • Nematocida_sp._AWRm80
  • Nematocida_sp._AWRm79
  • Nematocida_sp._AWRm78
  • Nematocida_parisii
  • Nematocida_minor
  • Nematocida_homosporus
  • Nematocida_ausubeli
  • Myriosclerotinia_sulcatula
  • Mitosporidium_daphniae
  • Microsporidia_sp._MB
  • Metchnikovella_incurvata
  • Laburnicola_rhizohalophila
  • Hepatospora_eriocheir
  • Hamiltosporidium_tvaerminnensis
  • Hamiltosporidium_magnivora
  • Globomyces_sp._JEL0801
  • Globomyces_pollinis-pini
  • fungal_sp.
  • Enterospora_canceri
  • Enteropsectra_breve
  • Enterocytospora_artemiae
  • Encephalitozoon_romaleae
  • Encephalitozoon_intestinalis
  • Edhazardia_aedis
  • Ecytonucleospora_hepatopenaei
  • Dictyocoela_roeselum
  • Dictyocoela_muelleri
  • Cucumispora_dikerogammari
  • Boletus_aff._violaceofuscus
  • Astathelohania_contejeani
  • Anncaliia_algerae
  • Alternosema_astaquatica
  • Agmasoma_sp._JBojko-2022a